mRNA_E-siliculosus-1a_F_contig1124.827.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1124.827.1
Unique NamemRNA_E-siliculosus-1a_F_contig1124.827.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1124.827.1 vs. uniprot
Match: D7FTN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.860e-43
Identity = 80/108 (74.07%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 RAHTPLVRRVESVRQALQDLVWSLLRVPNVLNHDAWECVSMFLVSEDED---SDLADYLERNTFIDCSALRTRAGVPQTTKSKTRQDGSSRNSKKRFVESVKSHFWTA 315
            R  +PLV R E+V QALQDL+WSLLRVP VL+H  WE  S  LV  DE    SDLAD LERNTFIDCSALRTRAGVPQTTKSK+R  GSSRNSKKRFVESV SHFWT+
Sbjct:   28 RPRSPLVCRGETVHQALQDLLWSLLRVPYVLSHPCWETASEVLVPADEGQRRSDLADILERNTFIDCSALRTRAGVPQTTKSKSRSPGSSRNSKKRFVESVTSHFWTS 135
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1124.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTN2_ECTSI5.860e-4374.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1124contigE-siliculosus-1a_F_contig1124:27124..28709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size333
Model size334
Exons3
Ec32 orthologEc-11_001740.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1124.827.1prot_E-siliculosus-1a_F_contig1124.827.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1124 27125..28709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927632.119748-CDS-E-siliculosus-1a_F_contig1124:27124..272041622927632.119748-CDS-E-siliculosus-1a_F_contig1124:27124..27204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 27125..27204 -
1696318618.2178574-CDS-E-siliculosus-1a_F_contig1124:27124..272041696318618.2178574-CDS-E-siliculosus-1a_F_contig1124:27124..27204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 27125..27204 -
1622927632.135363-CDS-E-siliculosus-1a_F_contig1124:27835..279151622927632.135363-CDS-E-siliculosus-1a_F_contig1124:27835..27915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 27836..27915 -
1696318618.2269466-CDS-E-siliculosus-1a_F_contig1124:27835..279151696318618.2269466-CDS-E-siliculosus-1a_F_contig1124:27835..27915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 27836..27915 -
1622927632.1481497-CDS-E-siliculosus-1a_F_contig1124:28536..287091622927632.1481497-CDS-E-siliculosus-1a_F_contig1124:28536..28709Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 28537..28709 -
1696318618.2338557-CDS-E-siliculosus-1a_F_contig1124:28536..287091696318618.2338557-CDS-E-siliculosus-1a_F_contig1124:28536..28709Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1124 28537..28709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1124.827.1

>prot_E-siliculosus-1a_F_contig1124.827.1 ID=prot_E-siliculosus-1a_F_contig1124.827.1|Name=mRNA_E-siliculosus-1a_F_contig1124.827.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
RAHTPLVRRVESVRQALQDLVWSLLRVPNVLNHDAWECVSMFLVSEDEDS
DLADYLERNTFIDCSALRTRAGVPQTTKSKTRQDGSSRNSKKRFVESVKS
HFWTAYWRAST
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mRNA from alignment at E-siliculosus-1a_F_contig1124:27124..28709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1124.827.1 ID=mRNA_E-siliculosus-1a_F_contig1124.827.1|Name=mRNA_E-siliculosus-1a_F_contig1124.827.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1586bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:27124..28709- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGCTCACACCCCGTTGGTTCGCAGGGTCGAAAGTGTGCGCCAGGCATT
GCAGGATCTGGTTTGGTCTCTCTTGCGCGTTCCCAACGTCCTAAATCACG
ATGCTTGGGAGTGCGTTTCGATGTTTCTGGTGTCAGAGGATGAAGACTCA
GATCTGGCCGATTACTTGGAAAGGTAACAGAGAGGGAGAGAGCAGAGAGA
CCAAACAGAGAGCACGAGACAGAGAGAACGAGACAGAGAGCACATTGCAA
TGACCTCCTGTTATTGGTTGTATTTAACTGGCTAGTTGCGTGAGGAAATG
GCGTGTTGATGCGGGAAGGAAGTGATTGAAAATGGGGTTGCTGCTGGTAC
GCGTTCACATGAGCATTTCAGCGTATTCAACGTCGTCTTTTTTCACAGAG
CGCGGATGTATGCATCAGCACTGCATGACACGTGTTGATGCCGCTACCGT
TTTATTTTTCAGGTGCATTAACTCCTTTCACAATTCGGCAGACCTGCCAG
CCTCCCTTGAGGTCTTGCGTCACATGCTGGAAAGAAATGTTGACCTGGTG
AGTTGTCTCAGTGCGCCAAAAGTGGAGAAAACAAGCCGGCGTTCTATGCT
CGGGTCGTGTGTAGTACACGTGTATTGTCTACTTACTGTTTTCCTCTCAA
GGCTCCAGGGAGCTGCCAAGTGGTAGATGGGTCAGGCTGGAGCCGTTCGA
ACTACTTCTATTCTAGAGTGTATACATGATTCAAGCACCCCTGGTCTTCT
GCCGACCCTTTTCTGCCCCGTTCATTTTCTCGGATGCTCTCCAGAAATAC
GTTCATCGACTGCTCCGCCTTAAGGACGAGAGCGGGAGTTCCGCAGACGA
CGAAAAGCAAGACAAGGCAAGATGGTTCTCGGCATTCGGAGGCTAACCCA
AACACTCACGAATATTTGGATTAATGGTGTTATCCCAACACGTAGCAGCA
GAAGCTGGCGACCACCGACGCTAGTCGATGAGATAGCTCATTGAGCTTGT
AGCGGCGGAAGTACAGCAGTACTCAGTGCAGAAGAAGATGTGCGATGTTG
TAAACGCGGCGCTTAGGTGGCCAACACAGATTCACACAGATACGGAGGTG
GTGCACAGGACAGTAGTCCAGGTGGGACGTATCCGAGGGATGGCAAGGAT
GGTAGTGGTACACAGACCGACCCTCGTAACACAGAGTGATCACATAGAGT
GAGATCGATCACAGAACGACGATACGAACTACGCAGCAGTATTTCCTCCG
CATACGTTACATTCCAACCGACCAACATTACGCAGCTCGTATGAACGGGG
GGACAACTGAACGTTTCCATAACGTGCCGAAGTCTGAATCAATCAAGGCG
AAGAGTTCCGGAGTCTGTTCTTAACTCACCTGTGGAAGCGACATACATTG
AGGACCTCAACCTGAACGAGGTTCCAACATTTCTTAGTCTTTCCGCCGGT
CCGTGCCTTTGCGTTGCTACGGAAAACACACCCGGTCTGCACAATAGGTC
ACCAGGTTCGTCGAGAAACTCCAAGAAACGGTTTGTGGAATCTGTCAAGA
GCCACTTCTGGACAGCCTACTGGAGAGCATCGACAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1124:27124..28709-

>mRNA_E-siliculosus-1a_F_contig1124.827.1 ID=mRNA_E-siliculosus-1a_F_contig1124.827.1|Name=mRNA_E-siliculosus-1a_F_contig1124.827.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:27124..28709- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGCTCACACCCCGTTGGTTCGCAGGGTCGAAAGTGTGCGCCAGGCATT
GCAGGATCTGGTTTGGTCTCTCTTGCGCGTTCCCAACGTCCTAAATCACG
ATGCTTGGGAGTGCGTTTCGATGTTTCTGGTGTCAGAGGATGAAGACTCA
GATCTGGCCGATTACTTGGAAAGCGTGCTCACACCCCGTTGGTTCGCAGG
GTCGAAAGTGTGCGCCAGGCATTGCAGGATCTGGTTTGGTCTCTCTTGCG
CGTTCCCAACGTCCTAAATCACGATGCTTGGGAGTGCGTTTCGATGTTTC
TGGTGTCAGAGGATGAAGACTCAGATCTGGCCGATTACTTGGAAAGAAAT
ACGTTCATCGACTGCTCCGCCTTAAGGACGAGAGCGGGAGTTCCGCAGAC
GACGAAAAGCAAGACAAGGCAAGATGAAATACGTTCATCGACTGCTCCGC
CTTAAGGACGAGAGCGGGAGTTCCGCAGACGACGAAAAGCAAGACAAGGC
AAGATGGTTCGTCGAGAAACTCCAAGAAACGGTTTGTGGAATCTGTCAAG
AGCCACTTCTGGACAGCCTACTGGAGAGCATCGACAGTTCGTCGAGAAAC
TCCAAGAAACGGTTTGTGGAATCTGTCAAGAGCCACTTCTGGACAGCCTA
CTGGAGAGCATCGACA
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