mRNA_E-siliculosus-1a_F_contig1123.822.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1123.822.1 vs. uniprot
Match: D8LFQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ8_ECTSI) HSP 1 Score: 644 bits (1661), Expect = 1.290e-229 Identity = 364/491 (74.13%), Postives = 368/491 (74.95%), Query Frame = 1
Query: 1 MSALRVLVASLVSCLTITYIIGGNSQTWPSPDAAAATAIASSDFLFSVDVVLDESAAAVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGIAEVVGPPLPVGDEASIPSSDAGRAASDAQRDVPEDSKLVDPVLTLGISIDGNEERPLFYYTGQASMSFSNTIRTIHSNPEKVAVAFCTENLVSESLPEDLARCSGAVSAHITETLGTTDEPLRHDTLPKQHQQXXXXXXXXXXXXGQEHLETHGSLEESDPSSADGVAVEGLLMTVPLNVNGVETVLQIFRDSNAKDLASDFCRRAEFGLEGSFLESCFSQMVDIVHRAVATYERQDDQNGEPPERTPFTFKVPVTLAGLQLHAEFTTTETPRTSARRFCTLNLPVIESALGLDAYEGEDEGRDEEGAAGVGFFMSEGRKSLREACTVVVEDAINAVLLGMRERVLEAELTQANSTDSSSYDDSSDGWPQEGSARGAWAASQIAADTMA 1473
MSALRVLVASLVSCLTITYIIGGNSQTWPS DAAAATAIASSDFLFSVDVVLDESA AVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGI EVVGPP PVGDEASIPSSDA R ASDAQRDVP+DSKL DPVLTLGISIDGNEERPLFYYTGQ GLLMTVPLNVNGVETVLQIFRDSNAKDLASDFCRR EFGLEGSFLESC SQMVDIVHRAVATYERQDDQ+GEPPERTPFTFKVPVTLAGLQLHAEF TTETPRTSARRFCT NLPVIESALGLDAYEGEDEGR EE + GVGFF+SEGRKSLREACTVVVEDAINAVLLGMRERVLEAELTQANST SSSYDDSSDGWPQEGSARGAWAASQIAADT A
Sbjct: 1 MSALRVLVASLVSCLTITYIIGGNSQTWPS-DAAAATAIASSDFLFSVDVVLDESAVAVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGITEVVGPPFPVGDEASIPSSDAERVASDAQRDVPDDSKLADPVLTLGISIDGNEERPLFYYTGQ-----------------------------------------------------------------------------------------------------------GLLMTVPLNVNGVETVLQIFRDSNAKDLASDFCRREEFGLEGSFLESCSSQMVDIVHRAVATYERQDDQSGEPPERTPFTFKVPVTLAGLQLHAEFKTTETPRTSARRFCTPNLPVIESALGLDAYEGEDEGRGEEESTGVGFFLSEGRKSLREACTVVVEDAINAVLLGMRERVLEAELTQANSTYSSSYDDSSDGWPQEGSARGAWAASQIAADTTA 383
BLAST of mRNA_E-siliculosus-1a_F_contig1123.822.1 vs. uniprot
Match: A0A6H5KRC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC8_9PHAE) HSP 1 Score: 311 bits (796), Expect = 2.360e-101 Identity = 158/173 (91.33%), Postives = 164/173 (94.80%), Query Frame = 1
Query: 826 MTVPLNVNGVETVLQIFRDSNAKDLASDFCRRAEFGLEGSFLESCFSQMVDIVHRAVATYERQDDQNGEPPERTPFTFKVPVTLAGLQLHAEFTTTETPRTSARRFCTLNLPVIESALGLDAYEGEDEGRDEEGAAGVGFFMSEGRKSLREACTVVVEDAINAVLLGMRERVL 1344
MTVPLNVNGVETVLQIFR SNAK+LASDFCRRAEF LEGSFLESC SQMVDIVHRAVATYERQDDQNGEPPE+TPFTFKVPVTLAGLQLHAEF TTETPRTSARRFCT NLPVIESALG+DA+E EGRDEEG+ GVGFFMSEGRKSLREACTVVVEDAINAVLLGMRER+L
Sbjct: 1 MTVPLNVNGVETVLQIFRGSNAKELASDFCRRAEFRLEGSFLESCCSQMVDIVHRAVATYERQDDQNGEPPEQTPFTFKVPVTLAGLQLHAEFKTTETPRTSARRFCTPNLPVIESALGIDAFEEAGEGRDEEGSTGVGFFMSEGRKSLREACTVVVEDAINAVLLGMRERLL 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1123.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1123.822.1 >prot_E-siliculosus-1a_F_contig1123.822.1 ID=prot_E-siliculosus-1a_F_contig1123.822.1|Name=mRNA_E-siliculosus-1a_F_contig1123.822.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=492bp MSALRVLVASLVSCLTITYIIGGNSQTWPSPDAAAATAIASSDFLFSVDVback to top mRNA from alignment at E-siliculosus-1a_F_contig1123:18921..22754- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1123.822.1 ID=mRNA_E-siliculosus-1a_F_contig1123.822.1|Name=mRNA_E-siliculosus-1a_F_contig1123.822.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3834bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1123:18921..22754- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1123:18921..22754- >mRNA_E-siliculosus-1a_F_contig1123.822.1 ID=mRNA_E-siliculosus-1a_F_contig1123.822.1|Name=mRNA_E-siliculosus-1a_F_contig1123.822.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1123:18921..22754- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |