mRNA_E-siliculosus-1a_F_contig1123.821.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1123.821.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI) HSP 1 Score: 1773 bits (4592), Expect = 0.000e+0 Identity = 1074/1333 (80.57%), Postives = 1098/1333 (82.37%), Query Frame = 3
Query: 114 MEAERRRRSDDRERAAYDGCSPASAAVLGSTTDCLTPPKLDGQGGDRDLALATKPERGVRTAWPDRAAGRATGGYRERSDMGGGGRGGG---RNARRAVSPTLPLEGLHKMEGCFVTPKKISGHVLLGNRGXXXXXXXXXXARRMGVSPSDHEPVRIAPMVCHDRSDDXXXXXCGYDSGGTFYDEDSSGAATSTHTRTAAKQHGNDRAYPLGFSTTEARPVDRGDRRTGST---AVVDDFPRKQTESSRFVVGRSSERMSAAESMGRGGXXXKLGASRGQXXXXXXPPWLGGVAASRHDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTATYVPDPSRPAGYRIFALAATVNISIGDKSTAPASAASGSERTSGGVIDPRLGGPGGAGVGGAQEADSSRERFGRDNSGGGGAPLSNAPTLLEVTPMTTSDLESPAASSPTTAATVGDPTTPAAASARVKNGAGTTRFGDEGAATTPKRRFVVHKSGLRAPSSLSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPAAAAAWSPRDNDGTVETLTATETAYSVSASPAPPTGCLSADETAFLVDKNHDDDKHPERPVSPTAPRLSRSVGHAMSVPSAGGGAGFEGGATPSGAXXXXXXXXXXXXXXXXXXXXXXSAVGEGKAPRRQVEEGVEVGSTCLTGVLPDEPAAVTTRXXXXXXXADAMRGGERFETEAQLTVDSPTTC-AGGVEADKELEMEAAAAMATGQQALSSQSGGAGQRKEDQRCHVGGWGSPSSQTSSSASLKDFVHYVRVQSGGRGEASLSSPASRSNRTRGGGQGAGAMRSGDAHMSKDKEAFSSERIPGTFHRRPLGPVRRSEEMEHPLSSRS-KPQEHXXXXGPEEPAAVTALWATAAETPTTALAGVPVYETHXXXXX-SSRSRRSAQADTIRYSGSGVGGGKAGGXXXXXXXXXXXXLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVEHQMHTSATNTHGEGASSRKDGSFQDSSTLLQHALPPFVSKGNGRENVLAPAVASENSELGGVVATGGGRVAAAGEVSGVGSEVSLGGGG--GAEVERCEDCGLTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPFTSGKGGDGGGTATSRRGVGRNKPSPVGGSSVRREGSSQSGDADRVSPGGLDVSVGAGGGSSRGLGGEVGGSFLRRSKKVTLKTLPAVEGSAHCPFCSSSIPRAKLSAHLLRCKKSRRSQTCPRPEAGPSPRISGTDASNTTTIDED 4079
MEAE RRRSD+RERAAYDG SPASAA+LGSTTDCLTPPKLDGQGGDRDLAL KPER VRTAWPDRAAGRATGGY ERSD GG RNAR AVSPTLPLEGLHKMEGCFVTPKKISGHVLLGNRGXXXXXXXX RRMGVSPSDHEPVRIAPMV HDRSD XXXXX AATS HTRTAAKQH NDRAY LGFSTTE RPVDRGDR+TGST AVVDDFP KQTESSRFVVGRSSERMSAAESMGRG XXX XXXXXX LGGVAA+ HDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTAT+VPDP+RPAGYRIFALAATVNI+IGDKSTAPASA SGSERTSGGVIDP L GPGGAG GGA+EADSSRERFGRDNSGGGGAPL APTL EVTPMTTSDLESPAASSPTT ASARVKNG GTT GD GA TTPKRR APPAAA SPRDN GTVETLT+TE A++VSASPAPPTG SADETA LV+K DDDKHPERPVSPTAPRLS SVGH+MSVPSAGGGAG EGGA P XXXXXXXXXXXXXXXX SAVGEGK PRRQVE GVEVGS CLT VLPDEPAAVTTR XXXXX +R GE FETEAQLTVD+PTT AG V+ D+ELEMEAAAAMATGQQ LSSQSGGAGQR SSASL+DFVHYVRVQSGGRG+ASLSSPASRSNR RGGGQGAGAMRSGDAHMSKDKEAFSSERIPGTFHRRPLGPVRRSEEMEHPLSSRS KPQEH G EEPAA TALWATAAETPTTALAGVPVY+THXXXXX SSRSRRSAQADT+RYSGSGV GGK G LLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAI+AVSVEHQMHTSATNTHG+GASS GSFQDSSTLLQHALPPFVSKGNG ENVLAPAVASENSELGGVVATGGGR AAAGEVSGVG EVSLGGGG GAE ERC DCG TFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNP TSG GGDGGGTA SRRGVGRN PS VGGSSVRREGSSQSG AD VSPG LDVSVG GGGSSRG GGEVGGSFLRRSKKV LKTLPAVEGSAHCPFCS+SIPRAKLSAHLLRCKK RRSQTCPRPEAGPSPRI GTDASNTTTIDED
Sbjct: 1 MEAEHRRRSDERERAAYDGSSPASAALLGSTTDCLTPPKLDGQGGDRDLALVMKPERAVRTAWPDRAAGRATGGYCERSDRGGXXXXXXXXXRNAR-AVSPTLPLEGLHKMEGCFVTPKKISGHVLLGNRGXXXXXXXX---RRMGVSPSDHEPVRIAPMVRHDRSDXXXXXXXXXXXXXXXXXXXX--AATSMHTRTAAKQHENDRAYTLGFSTTETRPVDRGDRKTGSTGATAVVDDFPWKQTESSRFVVGRSSERMSAAESMGRGXXXXXXXXXXXXXXXXXXXXCLGGVAAAGHDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTATFVPDPNRPAGYRIFALAATVNINIGDKSTAPASATSGSERTSGGVIDPLLRGPGGAGAGGAREADSSRERFGRDNSGGGGAPLLIAPTLSEVTPMTTSDLESPAASSPTTXXXXXXXXXXXXASARVKNGVGTTGCGDGGAVTTPKRR---------------------------------------------ESAPPAAAR--SPRDNGGTVETLTSTENAHTVSASPAPPTGYFSADETASLVEKTRDDDKHPERPVSPTAPRLSCSVGHSMSVPSAGGGAGIEGGAAPP-------XXXXXXXXXXXXXXXXGSAVGEGKTPRRQVEHGVEVGSACLTEVLPDEPAAVTTRAAXXXXXX--VREGEEFETEAQLTVDAPTTGGAGPVKTDRELEMEAAAAMATGQQGLSSQSGGAGQRXXXXXXXXXXXXXXXXXXXSSASLQDFVHYVRVQSGGRGDASLSSPASRSNRRRGGGQGAGAMRSGDAHMSKDKEAFSSERIPGTFHRRPLGPVRRSEEMEHPLSSRSSKPQEHHSHQGLEEPAADTALWATAAETPTTALAGVPVYQTHXXXXXXSSRSRRSAQADTVRYSGSGVSGGKTGVCDAKGGSSGGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTSATNTHGKGASSLNGGSFQDSSTLLQHALPPFVSKGNGPENVLAPAVASENSELGGVVATGGGRGAAAGEVSGVGLEVSLGGGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGTAASRRGVGRNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSVGTGGGSSRGAGGEVGGSFLRRSKKVALKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRSQTCPRPEAGPSPRIGGTDASNTTTIDED 1271
BLAST of mRNA_E-siliculosus-1a_F_contig1123.821.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE) HSP 1 Score: 850 bits (2196), Expect = 5.760e-290 Identity = 502/593 (84.65%), Postives = 511/593 (86.17%), Query Frame = 3
Query: 2685 LSSRSKPQEHXXXXGPEEPAAVTALWATAAETPTTALAGVPVYETHXXXXXSSRSRRSAQADTIRYSGSGVGGGKAGGXXXXXXXXXXXXLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVEHQMHTSATNTHGEGASSRKDGSFQDSSTLLQHALPPFVSKGNGRENVLAPAVASENSELGGVVATGGGRVAAAGEVSGVGSEVSLGGGG--GAEVERCEDCGLTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPFTSGKGGDGGGTATSRRGVGRNKPSPVGGSSVRREGSSQSGDADRVSPGGLDVSVGAGGGSSRGLGGEVGGSFLRRSKKVTLKTLPAVEGSAHCPFCSSSIPRAKLSAHLLRCKKSRRSQTCPRPEAGPSPRISGTDASNTTTIDEDXXXXXXXXXXXXXXXXXXXXX-NPSRKVRCPHCLRGFSPAVAPTHVSICARVENRPKGSGTAKAAAARKDDAQKKVALGVDYTAASPPGGRKGLXXXXXXXXXXXXXXXXXXXXXPEKARVMPPFY 4454
S SKPQEH GPEEPAAVTAL A+AAETPTTALAGVP Y+TH SSRSRRSAQADT+RYSGSGVGGG XXXXXXX LLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRA GLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVE+QMHTSATNTHG ASS DGSFQDSSTLLQHAL PFVSKGN ENVLAPAVASENSELG VVATGG R A GEVSGV SEVS GGGG GA+ ERCEDCG TFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD NP TSGKGGDGGG A SRRGVGRNKPS VGGSSVRREGSS+SGDADRVSPGGLDVSVG GGGSSRG+GGEVGGSFLRRSKKV LKTLPAVEG AHCPFCSSSIPRAKLSAHLLRCKK RRSQTCPRP+ GPSPRISGTDASN T I ED XXXXXXXXXX N SRKVRCPHCLRGFSPAVAPTH+SICARVENRPKGSGTAKAAAARKDDAQKKVALGV YT ASPPGGRKGL XXXXXXXXX PEKARVMPPFY
Sbjct: 8 FESSSKPQEHHPHLGPEEPAAVTALGASAAETPTTALAGVPGYQTHHHHP-SSRSRRSAQADTVRYSGSGVGGGNXXXXXXXXXXSEGRGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHTSATNTHGRRASSLNDGSFQDSSTLLQHALSPFVSKGNDPENVLAPAVASENSELGRVVATGGLRGTAGGEVSGVSSEVSSGGGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD-NPTTSGKGGDGGGNAASRRGVGRNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSVGTGGGSSRGVGGEVGGSFLRRSKKVALKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPRPKTGPSPRISGTDASNATVIHEDDKARTATYNGGXXXXXXXXXXXNASRKVRCPHCLRGFSPAVAPTHISICARVENRPKGSGTAKAAAARKDDAQKKVALGVGYTDASPPGGRKGLAASHGSSGAXXXXXXXXX---PEKARVMPPFY 595
BLAST of mRNA_E-siliculosus-1a_F_contig1123.821.1 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.270e-6 Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 3
Query: 2970 SVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIKA 3164
S +RH RRQLFSE + A+P V+CP+CGE A L HL C VL+R RG + VE A+ A
Sbjct: 683 SAVRHGPRRQLFSEGAPAQPSVYCPYCGER-EDAAALAAHLAACVVLERARGGPAQRSVEAALLA 746 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1123.821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1123.821.1 >prot_E-siliculosus-1a_F_contig1123.821.1 ID=prot_E-siliculosus-1a_F_contig1123.821.1|Name=mRNA_E-siliculosus-1a_F_contig1123.821.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1448bp MEAERRRRSDDRERAAYDGCSPASAAVLGSTTDCLTPPKLDGQGGDRDLAback to top mRNA from alignment at E-siliculosus-1a_F_contig1123:1682..17553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1123.821.1 ID=mRNA_E-siliculosus-1a_F_contig1123.821.1|Name=mRNA_E-siliculosus-1a_F_contig1123.821.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=15872bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1123:1682..17553+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1123:1682..17553+ >mRNA_E-siliculosus-1a_F_contig1123.821.1 ID=mRNA_E-siliculosus-1a_F_contig1123.821.1|Name=mRNA_E-siliculosus-1a_F_contig1123.821.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8688bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1123:1682..17553+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |