mRNA_E-siliculosus-1a_F_contig1118.791.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1118.791.1
Unique NamemRNA_E-siliculosus-1a_F_contig1118.791.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: D7G0I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I5_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 1.360e-143
Identity = 236/240 (98.33%), Postives = 237/240 (98.75%), Query Frame = 2 
Query:  464 MADSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKYDDFM 1183
            MADSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHM AFLKELVTKLS KMTADGLTDLVNHTTMFRDEKRQAEERIASAKAN TNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGID+VGMDYESKYDDFM
Sbjct:    1 MADSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMTAFLKELVTKLSPKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANKTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDTVGMDYESKYDDFM 240
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A836CNA4_9STRA (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.170e-33
Identity = 103/252 (40.87%), Postives = 139/252 (55.16%), Query Frame = 2 
Query:  470 DSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGG---ARGQGAGGGLSGLALKNMQDHVKLAIELAERMD----SSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRA-----NKKKSIKKKKAHSDVFGGDFDG--DGIDSVGMDYESKYDDFM 1183
            DSWED++F  P+ VPP  V  SW+DEE       A  P    +    +A          IAA  E   Q  ETAE+RRLRER RVEE+D+ LTEDLFGGGG   A    A  G+ G+ LK  QDHVKLA++L E++     S    ++ A LKEL+T++  K++ +    L  H   F+D K  AE++  +       ++  Q+A     N +KS  KKK H+D+FGG +DG  D  D +  +YE  YDDFM
Sbjct:    2 DSWEDDDFTPPTLVPPK-VTQSWDDEEXXXXXXXAK-PTQPTEKQLEQARKAREAEAMRIAAAHEAAQQEAETAEERRLRERRRVEESDHALTEDLFGGGGTAEAAEAPAQAGVEGIPLKTTQDHVKLALDLGEKLSKDGSSGSSGNILALLKELITRVEGKLSLEETNQLALHLNKFKDAKMVAEQKRQA-------ILKKQKAXXXXRNAEKS--KKKQHADLFGGAYDGVGDQYDELATNYEDAYDDFM 242
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A7S2C417_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C417_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.970e-17
Identity = 69/175 (39.43%), Postives = 102/175 (58.29%), Query Frame = 2 
Query:  464 MADSWEDEEF---DLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGG---GLSGLALKNMQDHVKLAIELAERMDS--SKPAHMAAFLKELVTKLSSKMTADGLTDLV 964
            M D+W+D+EF   DL    PP   PVS  D+EE+ E       G APK+SA K A            +LE+ LQ  ET ++RRLRER  +E AD++LT+DLFGGG A+ +       G+ G +LK+++DH+ LA ++ ER+++  SK  ++ A LKE V K    +T   L +++
Sbjct:    1 MGDAWDDDEFEVSDLNGGFPP---PVSNWDDEEEFEPPPLPGHGEAPKLSAEKQAKLKNQKNAKKRNDLESALQEEETDDERRLRERLEIENADHELTDDLFGGG-AKSETVVKIVQGVEGYSLKSLKDHLTLAHDVIERVENNKSKQNYIHAMLKEFVKKFDDHLTPGDLGEII 171
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A6V1PD14_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PD14_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 7.770e-15
Identity = 87/273 (31.87%), Postives = 128/273 (46.89%), Query Frame = 2 
Query:  470 DSWEDEEFDLPS---SVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXX---------IAAELETRL--QLGETAEQRRLRERNRVEEADNDLTEDLFGGGGA---------------------RGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKYDDFM 1183
            DSWED+EFD+P+   SV P A P +W+           V    APK    K   XXXXXXXX         I  +L  +L  Q  ET E+RR+RER  +EEAD++LTE+L  G GA                     + Q AG  L  LA+ +++D +  A +LA+R++ +   H+ AF KE++   +  +T D +++L+    + +++K      + +AK    +                 AH D FGGDF           Y+  YDDFM
Sbjct:    2 DSWEDDEFDVPAFNGSVAPPAAPTNWDXXXXXXXXXAPVDDEFAPKEPTVKQKAXXXXXXXXXXXXXXXXXIRKKLAVKLAIQANETDEERRIRERREIEEADHELTEELLSGAGAXXXXXXXXXXXXXXXXXXPATKKQEAG--LGALAMDSLEDFMTTAAKLAQRLNGAPNHHVLAFFKEMLRGSTESLTTDDVSELIALANVIKNDK------VKAAKGKTKSXXXXXXXXXXXXX----AHEDTFGGDFX---XXXXXTGYDDVYDDFM 259
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: B7G7B8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7B8_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 4.150e-13
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 2 
Query:  692 EQRRLRERNRVEEADNDLTEDLFGGGGAR-GQGAGGGLSGLA-----LKNMQDHVKLAIELAERMDSSKPAHMAA-FLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKY 1171
            E RR+++R  VEEADN LT+DLFGG  A+ G+GA GG +  A     +K+++DH+K A ++AE M      H+AA F KEL+ +    +  D +T+++    + ++EK QA +R+   K        +++A+K    K  +   + FG + + D  D +G DYE  +
Sbjct:   99 ELRRMKQRQ-VEEADNALTDDLFGGVDAKAGKGATGGAAAAAGDKVIMKDVKDHLKHARKVAECMQGHGKIHLAAAFFKELLQQSKDVLDDDAITEIIKTCNVIKNEKVQAAKRVTKVKGQ---AQKSKKADKAAEAKALQKQVETFGANDEYDEYDHIGADYEDAF 261
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A1Z5JPF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPF2_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 1.860e-11
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 2 
Query:  686 TAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGGLSG--LALKNMQDHVKLAIELAERMDSSKPAHMA-AFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKY 1171
            T ++RR  ER R+E ADN+LT+DLFG    + +  G   +G  + LK+++DH+K A ++AE M      H A AF KE VT     +  D +T+L+    + ++EK QA +R    +A  +  +     +K    K ++   + FG +   D  D  G  YE  +
Sbjct:   95 TPDERRQLERQRIEAADNELTDDLFGADNTKNKATGAAAAGDVVVLKDLKDHLKHARKVAEAMKKHGNVHFASAFFKECVTSSKDVLDDDAVTELIKTLNVIKNEKVQAAKRKVKGQAQKSKKV-----DKVAEAKARQKMIETFGDNDKFDQYDEFGERYEDDF 254
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A6T7HVD2_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HVD2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.800e-10
Identity = 53/186 (28.49%), Postives = 100/186 (53.76%), Query Frame = 2 
Query:  650 AAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGG-----------GGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMAA-FLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKY 1171
            A ELE  ++   T E+RRL  + R+E+AD+ LT+DLFGG            G++  GAG     + LK+++DH+K A ++ + + +    H+AA FLKE++ + S  +    +T++++   + ++EK  A ++    +A  +      + +K    K KK  ++++G + + D  D +G  YE  +
Sbjct:   87 AIELEADMEANMTIEERRLLAKQRIEDADHALTDDLFGGVDRSGPVGVVDAGSKAMGAG---DTVVLKDLKDHLKHARKVGQCLKAHGKIHLAAAFLKEVIQESSDALDDGAITEIISICNVIKNEKVAASKKKVKGQAQKS-----AKRDKVAETKAKKLSAELYGDNDNYDAYDEMGGAYEDDF 264
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A7R9WM26_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM26_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-9
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = 2 
Query:  710 ERNRVEEADNDLTEDLFGGGGARGQGAGGGLSG----LALKNMQDHVKLA-IELAERMDSSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKYDDF 1180
            ER RVE+ADN L ++LFGG GA+ +GA     G    LAL  ++DH+K A +  A      K      FL+E++      +  + +++L+    + ++EK QA++R    K  N    + ++A K+   K KK H + FG + + D  D +G  Y+  YD F
Sbjct:  100 ERKRVEDADNALADELFGGAGAK-KGAAATTKGAGDQLALMTLKDHLKHAKVVSAALKKHGKTLLATTFLREVIQGSKDTLDVNAISELITACNVIKNEKIQADKR----KTKNQGPKS-KKAEKEAQAKAKKIHDETFGDNNEYDQYDEIGESYQDDYDFF 255
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: A0A3M6VIR0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIR0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.600e-9
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 2 
Query:  470 DSWEDEEFDLPSSVPPTAVPVSWEDEEEDQ--------EDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRL--QLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGG-------LSGLALKNMQDHVKLAIELAERMDSSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEK 994
            DSW+D+EF++PS  P   V V+W+DEEE++         DA A    L PK                  A  + RL  Q+ ET EQRR RE+  +EEAD ++  D F G  A  + A G        +S + L ++ DH  L   ++ R+  S   +    +K ++TK S  +TAD + ++     + ++EK
Sbjct:    2 DSWDDDEFEVPSVTP---VAVNWDDEEEEEVEPVVTAKTDAAATKGPLKPKQLKKIKLKEIEEKQNMEIALTKARLAAQIDETDEQRRAREKASIEEADFEMAIDAFAG--APPKPAVGATNDTDATISSMRLLSLADHEHLGDVVSSRLAMSNSKYALECIKVILTKSSVNLTADDMKEITTIVNVVKNEK 188
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Match: K3WWC7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWC7_GLOUD)

HSP 1 Score: 67.0 bits (162), Expect = 8.370e-9
Identity = 76/259 (29.34%), Postives = 118/259 (45.56%), Query Frame = 2 
Query:  470 DSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPG---LAPK-------MSAAKAAXXXXXXXXXIAAELETRL--QLGETAEQRRLRERNRVEEADNDLTEDLFG--------GGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMAAFLKELVTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRANKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYE-SKYDDFM 1183
            DSW+D+EF++PS    T V  +W+DE        A  P    LAPK       +   K           IA   + RL  Q  ET  +R+ RE+ ++EEAD +   D F           GA G  A   +SG+ L ++ DH +L   +A R+++S   +    +K ++TK S  +TAD + DL     + +++K      IA+AK             KKK +  K+ +++V      G  I +   +Y   +YDDFM
Sbjct:    2 DSWDDDEFEVPSVAENTKVSANWDDEXXXXXXVAAPEPSQTSLAPKGPLKPKQLKKMKLKEMEEKRKMDIAL-TKARLAEQANETEAERKAREKRQMEEADFEAAIDAFATVTKPAPVAPGADGD-AESAISGMRLLSLADHEQLGEVVANRINASNAKYALECIKVIITKGSVNLTADDMKDLTTIINVIKNDK------IAAAKPKG----------KKKKVTGKQGYANVERSTGGGGKIINDDEEYGYDEYDDFM 242
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1118.791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G0I5_ECTSI1.360e-14398.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNA4_9STRA1.170e-3340.87Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2C417_9STRA1.970e-1739.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V1PD14_HETAK7.770e-1531.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7G7B8_PHATC4.150e-1334.73Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JPF2_FISSO1.860e-1132.12Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A6T7HVD2_9STRA7.800e-1028.49Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7R9WM26_9STRA1.240e-932.72Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A3M6VIR0_9STRA4.600e-931.25Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3WWC7_GLOUD8.370e-929.34Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1118contigE-siliculosus-1a_F_contig1118:27582..33385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size723
Model size1634
Exons6
Ec32 orthologEc-20_002450.1
Ec32 ortholog descriptionEukaryotic translation initiation factor 3 subunit J
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03009,ko03012
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CF04@1,2S9WP@2759
EggNOG free text desc.Translation initiation factor eIF3 subunit
KEGG Pathwayko03013,map03013
KEGG koko:K03245
Seed eggNOG ortholog2880.D7G0I5
Seed ortholog evalue3e-117
Seed ortholog score427.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1118.791.1prot_E-siliculosus-1a_F_contig1118.791.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1118 28045..32937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.8277829-UTR-E-siliculosus-1a_F_contig1118:27581..280441622927623.8277829-UTR-E-siliculosus-1a_F_contig1118:27581..28044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1118 27582..28044 +
1696318614.9307408-UTR-E-siliculosus-1a_F_contig1118:27581..280441696318614.9307408-UTR-E-siliculosus-1a_F_contig1118:27581..28044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1118 27582..28044 +
1622927623.9707506-UTR-E-siliculosus-1a_F_contig1118:32937..333851622927623.9707506-UTR-E-siliculosus-1a_F_contig1118:32937..33385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1118 32938..33385 +
1696318614.9880695-UTR-E-siliculosus-1a_F_contig1118:32937..333851696318614.9880695-UTR-E-siliculosus-1a_F_contig1118:32937..33385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1118 32938..33385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927623.8556325-CDS-E-siliculosus-1a_F_contig1118:28044..281281622927623.8556325-CDS-E-siliculosus-1a_F_contig1118:28044..28128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 28045..28128 +
1696318614.9402823-CDS-E-siliculosus-1a_F_contig1118:28044..281281696318614.9402823-CDS-E-siliculosus-1a_F_contig1118:28044..28128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 28045..28128 +
1622927623.8723214-CDS-E-siliculosus-1a_F_contig1118:29113..292181622927623.8723214-CDS-E-siliculosus-1a_F_contig1118:29113..29218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 29114..29218 +
1696318614.9478745-CDS-E-siliculosus-1a_F_contig1118:29113..292181696318614.9478745-CDS-E-siliculosus-1a_F_contig1118:29113..29218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 29114..29218 +
1622927623.8866959-CDS-E-siliculosus-1a_F_contig1118:30041..302181622927623.8866959-CDS-E-siliculosus-1a_F_contig1118:30041..30218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 30042..30218 +
1696318614.9554574-CDS-E-siliculosus-1a_F_contig1118:30041..302181696318614.9554574-CDS-E-siliculosus-1a_F_contig1118:30041..30218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 30042..30218 +
1622927623.9227388-CDS-E-siliculosus-1a_F_contig1118:31224..313021622927623.9227388-CDS-E-siliculosus-1a_F_contig1118:31224..31302Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 31225..31302 +
1696318614.9655426-CDS-E-siliculosus-1a_F_contig1118:31224..313021696318614.9655426-CDS-E-siliculosus-1a_F_contig1118:31224..31302Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 31225..31302 +
1622927623.940507-CDS-E-siliculosus-1a_F_contig1118:31824..320101622927623.940507-CDS-E-siliculosus-1a_F_contig1118:31824..32010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 31825..32010 +
1696318614.9730332-CDS-E-siliculosus-1a_F_contig1118:31824..320101696318614.9730332-CDS-E-siliculosus-1a_F_contig1118:31824..32010Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 31825..32010 +
1622927623.9583576-CDS-E-siliculosus-1a_F_contig1118:32844..329371622927623.9583576-CDS-E-siliculosus-1a_F_contig1118:32844..32937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 32845..32937 +
1696318614.9806058-CDS-E-siliculosus-1a_F_contig1118:32844..329371696318614.9806058-CDS-E-siliculosus-1a_F_contig1118:32844..32937Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1118 32845..32937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1118.791.1

>prot_E-siliculosus-1a_F_contig1118.791.1 ID=prot_E-siliculosus-1a_F_contig1118.791.1|Name=mRNA_E-siliculosus-1a_F_contig1118.791.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=241bp
MADSWEDEEFDLPSSVPPTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAK
AAKTAAEKDARIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFG
GGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMAAFLKEL
VTKLSSKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANNTNVIANQRA
NKKKSIKKKKAHSDVFGGDFDGDGIDSVGMDYESKYDDFM*
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mRNA from alignment at E-siliculosus-1a_F_contig1118:27582..33385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1118.791.1 ID=mRNA_E-siliculosus-1a_F_contig1118.791.1|Name=mRNA_E-siliculosus-1a_F_contig1118.791.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5804bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1118:27582..33385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGCTGCTTGCACGACACCCTGCTCTACTCTTTGCTGTGCTACGAGGCA
ACGCGAGATCTCCTGAAGCTACGTGCTCACCGCTGCTGTTTCGTCCTTCG
CCGTGATTTACGAGAGTCGTTTCGGCGCTCCATCAGAGCAACCCACGCGT
TGCTTGTTTTGGAGGTCGGTGTGCTTCAGGCTCACAGCTGTGACTGGCAT
AGCGGCACAGCGGCAGTGTGGCTCGAGAAGAGTTGGCTTGGACAGACACC
TCGGTTTGCTGGACTGCTGATAATCCCCAGGTCGTGAAAAACAGTCGTGC
ATCAACTCCTGTGCGGCAGAGCGTTGCAAGGACACAGGACGTTGTTTAAA
TAATAAACTAGCCTCAGGGGGGGGGGCGACAAACGCGCAGCACACCCAGG
GAGAGGAAGTCAGAGAGCAGCGCACAGCAAGCAGGGCCAACCGCGTGGGC
CGGTTAATAAACAATGGCGGATTCTTGGGAAGACGAGGAGTTTGACTTGC
CAAGCAGCGTCCCTCCGACGGCCGTACCCGTATCGTGGGAAGATGAGGTG
AGGCTCGGCACACGACCGCAGAACTCTTGACCGATTTCTCTACCAAATGG
ATGGTGGTTCATCTGTGCTGTATTCATACGCATATGCATACATCATGCAT
CCACCGACGATACATGTAGTATTGCAAGCTACAATGCATCCTTCACGAGG
GTACCTAGCGTCACAGGACACCACCATATCACTACACTATCGCCTTCTCG
TTGTGCCGGTTTCTCAGAGAGTTATTTGCGGTATACCAGTTGGCAGGAGG
ATTCGCACGTGTGTGCCCATATTTTCATATTTTGGAATCACCTGCTGGGA
GATGCTATTACTACTGCGCCGTGTCCATCCGCACCGCTCGCCAAGTCGCT
CCTTAGTGTACACTTACCCACAGTATGGTGCTGTGTCGTAGCTGTGCCCT
CCCCACTCACCCGGGGAACACAAACCCATTCGTGAAGAACTAGTGAACTA
GTGGTGTTGAAAGCAACGACGTTGGAGCGTCATGTCGCAAAGGCTACAAT
GTGGCGCCCCTCGCCTCGGACAATTCGTCGGGTTGCAGCACAGGGCGCGC
TGATTTTCTCCCGTCGCGGCTACATATGCATACCGCCTTCGCCGGAAATT
AAAGTAATGAGGAAATAGAACAGGGAGGGGGTACGCAGAGCCTATTCCCT
AACCCTGATCCAACTTCCCCGATTGCATGCTTTATCCAACATGTTAACAT
AATAATACGAAAAACCCTGCCAAGGCTGTTGTATTGTACTGGTTTACTCA
CTAAGTACATGGGTTATAGACGCAACAAGAGACGGGAAGAGATGGAGGCC
GGTAGAACCTTCGAGTTCGGTTACATCTCGACCGGTTATTTGTGGTCGTT
CTGTGTTTACATATATTTTTTCTAACAAGACTGTTGTTACTGTGAACTAG
GCCGAATGAACACACGTGTTGGGTGGGGTCTTGTCTCTCCTCCTGCGCCT
TGTGTACCGTATGGGGGGTTTGGCTGTCACAGGAAGAGGACCAGGAAGAT
GCGGGGGCCGTGGCGCCGGGATTGGCGCCTAAGATGAGCGCGGCGAAGGC
GGCCAAGACCGCCGCGGAAAAGGACGCGAGAATCGCGGTAAGCAAAACCA
GGGGACCTTTCATTCCGTGCGGCGGCAGCGGTGGCTGTGTAGTATCGTTG
AGCTGCCGAACAGCGATGCACGAGCGTCAGATTCGTCCCGCCCGCGGAGG
AGGAGGTGCATTGAAGGAACGGTTGGCTTTCGGTGGCAATGCTCCGTCCT
CTAGAGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGTAAAACATGA
GTGCGCCCCCTCAGCTTCCTGCCGCTTGTGGCACTGGCGTTGATGACACG
CCACTCCGCGGAGACTCCGGATTGTAGTGCCGTTCTCCGCTACGTATGTA
CAACAGGGCGAAAAAGGGTGGCACTGCTTTGGCCCTATTCTGAAGTGTTA
AGATACCGGTTCTTTTCAGGGGAGCGAACGCTTTCGGATTTTGTCAACGA
TGTGGGGTTGTTGCCGGGCGAGTGCACTTTGACGTCCTGGTCATCTGCGT
TGGCAAACCATGCCGGACCTTGTGCTGTCAGTCCAGCGCACAACGGTCTG
TTGCACGAGATGCTTGCGGACGTATTCGCCTACCCTCCTCTCCCAAGTTG
TTGGAGCTGTCTTGTGTCAATGTCGACTCCACCAGCCTATAATAGAAGTC
GTGCTCTATTGCAACGATCACCAGTATGTTCGGGTAATTGCTTCGACCCA
TCGCTGTCACAGCCTTTGCGGACAGACTCCCCGTCACACCAGCCACCATT
CTCATCCCTCCCCCCCCACTTCTTGCTCCTTTCTCGCGATTGAATTTGCT
CTTGTCGTTCGTCATTGTCGTCGTTATTGTTGTCGTTGCGTTTCCACGCA
AACGTTTCAGGCAGAATTGGAGACACGATTGCAGCTGGGCGAGACGGCTG
AACAACGACGTCTGCGCGAACGGAACCGTGTGGAGGAGGCCGACAACGAC
CTGACGGAGGACTTGTTCGGCGGAGGAGGCGCGCGGGGGCAGGGAGCGGG
GGGCGGGTTGTCTGGCCTCGCGCTAAAGAATATGCAGGTGCGGGGGCGGC
CTGCCGTGTGTTGTCCTGCCAACACCCGTGTGGCGCGATGGGTGTACCTC
TCGATATTTTGCATGTGTATGCCACGATCTTTTGTTACTAGTATTGCAGA
ATTCACAGGTTCCCTCTGCAACATAGCCCGGGCCTGTCTTGTTTATTCGT
GTGCAGCCTTTGTGTTTTGGCGAGGGGCTGGGTGAGGGACCTACGGCCGC
CGGCGAAGGTCGGTGGAAAGGCTTGGCTCTTGTTTTTGGTGGTCTTGTTG
CCATCCTGTCACCCAGAAAGTTGTTGTCGATGGGGTGAGTCGCGGCGTCG
ATTGTCGTCAGGCTTGTTCGAATCGTGTAGCAACAGAGAATAGACGACGA
CGGTTTCGCCGTGGTGGACATGCTTTTGCCCATGCCCCTTCCCGCCGCCA
AGCGCTTCGATGGCCTCGGGGCATACCGTGTTGCAAGAACCCGCGAATCG
TTTGTGTACCCCCCAACTCGTCTCCTTCTACTTGGGCTCCGCGGAATGCC
TAGTATCAGTTGGCTGTCCTCGTTGTTTTCGTCCCATCTATATATTGTGC
TATGCTTTATTGGAGAATGTCGGACGTACTAGGCGGTCCAGATGTGGTAT
GCTCTCGGTCACGATTTGGTCGGCGCCGAGATTTCGGTGCGGTAGATAGG
CGCCGCAGATTCTGTCGCCCAACTCGTGCTGCCCGAAGCGGGCCATGGGC
TCTCCGTGTAGCGGCAGGGACAGCGTACTGCATTGCCAATGTGCCCAATG
TGCCCGGTTGCGACGCGTACTCCCCCCGGCGGCCTGCCTCACGAACCGCA
GCATCAGCCGGCGCCTGCCTAGTAGTCTTGCCGGCATTGCACGTACATGT
GTTTTTTTTTTTTGTGTTTTGTTTTTTCATTCTTTCTTGTGGTACCTGTT
TTGTCACCTTCGACGTGCCATATGCCTTCCCCGGTCGCTCTGCTGCCTGC
TTACCGTTTTCTTGCCTGCGGTCATCAACCCTGTGCCACATAGGACCACG
TGAAGCTGGCGATTGAGCTCGCCGAGAGGATGGACTCCAGCAAACCCGCA
CACATGGCGGCTTTCCTGAAGGTCGGTCGGCGTCCCATGTACACTTACGG
CTCTTTTTTTCCAAACACTCTCGCCGCCTCGCCTTCGTGTGCCCCTTCCT
CTCCTCTGATCGCCCCGTCTCTCCGATTAATTATTTCAATTTTCCCCTCT
TCGCTCTTTTCCTCTCTCCCTTTTTTTTTTTTGCTGGAGCAGTAGCTCCT
TAGGAAACTCTGTTCCTCTCTACTTGTTGTTCTTGTTGTTGCTATTGTCT
TCCCATGAAAAACCGTTCCGATCTCTCTATCCAGTACCTTCATCTGTGTG
TACTAGTCTACCACTTGACTCGGTAGATTCCCGTGGTCACAGGCTAACTT
ACCAAAAAAGGGTACTAAAAAAAAACGGACCCGAAGGGTCAACAAGTACT
TTATTTAATTGCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTCTTCTTTTC
TTTGTTTGTTCTGGAGCAGGAGCTCGTTACGAAACCCTTTTTCCCTACCT
TTTCTTTGTTTTGTTTTCGTTTCTTTTTGTTTCACTGGGGCAGGAGCTCG
TTACGAAACTTTCGTCCAAGATGACGGCGGACGGGCTCACCGACCTGGTG
AACCACACCACCATGTTCCGCGATGAGAAGCGCCAGGCAGAAGAAAGAAT
CGCGAGCGCGAAGGCGAACAATACGAACGTCATCGCGAACCAGCGCGCCA
ACAAGAAGAAGTCCATCAAGAAGAAGAAGGTGAGGGACAGACAGACAGAC
AGATAGGCAGGCAGGCAGGCAGGCAGGCAGACAGACAGGCAGACAGATGC
ATAGAGAGAGAGGAGAGAGAGAGAGAGGAGAGAGAGGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTATAGAGAGAGAGN
NNNNNNNNNGGGAGAGAGGGGAGGGGGGGGGGGGGGGGGAGGGGAGGGAG
GGGAGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGACGCAGTGTATTGTTTTTGTCTTGCTGATTCTCGCTTGACGCT
TGTCCTGATGCATTTTTTACTTGCTTCTGTGTCCTCACGTGGTAAATGTA
TTGTTGCCTGTTGGCCGCCGCCGTCTTGTTGGCTTCCCTTCGTTCTTGAA
CCAGCTCCCGCCGCGGGGTTTGGTTTTGCGTGCGTACTCGGTTTTTGATT
GGGGTGCGATAGTTTGCCCCTTCAGCCAGACAAGAGATCTGTCGTGCATC
TTTCTCGCAGCGTGGTTATTTGGCAAGCCATGCTTTGGCTGAAAGGCATG
GGTGCTTGCTCGATTCCCACGAAGGCGATAGTCGACAGACTTCTTCCCTG
AGCATGAGTAGTAACCCTTACGAGGGTTTCCATGTCTCGCGGTGTCGTTT
CGTTTTGTCCTGACTAAATGTACGGTTTCGCCGCGCCCCGCGCGCTGCCC
TGGTGCTTTATGCTTGTCCTTTCTCCCGTCGCCCTCTGGCGCCCCCCGCG
CATTTTTCCGCAGGCACACTCGGATGTTTTTGGCGGTGACTTCGACGGCG
ACGGTATCGACAGTGTCGGGATGGATTACGAGAGCAAGTACGACGACTTC
ATGTAGAGTAGTGGTACTTTTGTTTCTTTGCGCTCTTATTGCCATATTTT
GGTGTGTCTCGGGGGGGAGTTTTCCTCCGTTCAGGAGGAGGCTGGGATTA
CGGTTGTCCGGGCGGGTACATGCCCCCCCCCCCGCGCGCGCGCACGCGCT
GCGGGCGCCCGTTTGCTCTTGCTCCTGCCTATGCAGCTACCGCTGGCCAA
TTTTCGAGTCCATTGCTTGGTTACCCCAGTGTTGTGCGTAGGTGCTGTGG
AGGGACACGTCGTATTCGTATTATCTCCTTTTGTTCGTCTGAAGGCAGAG
GCGCAAACAGTGTCGATTTTGTGTTGGGACCGCGGACATTGGCATGTTGG
TGGTGGTGGTCGGTGGTTACCTTTGAACCTATCCCGTTGAGTGAGTGACA
TCCGTGAGCGCATTCCGCCGGCGAAGTTTGCGTGCTCGTGCAAACATGCG
GGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1118:27582..33385+

>mRNA_E-siliculosus-1a_F_contig1118.791.1 ID=mRNA_E-siliculosus-1a_F_contig1118.791.1|Name=mRNA_E-siliculosus-1a_F_contig1118.791.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1118:27582..33385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGATTCTTGGGAAGACGAGGAGTTTGACTTGCCAAGCAGCGTCCC
TCCGACGGCCGTACCCGTATCGTGGGAAGATGAGATGGCGGATTCTTGGG
AAGACGAGGAGTTTGACTTGCCAAGCAGCGTCCCTCCGACGGCCGTACCC
GTATCGTGGGAAGATGAGGAAGAGGACCAGGAAGATGCGGGGGCCGTGGC
GCCGGGATTGGCGCCTAAGATGAGCGCGGCGAAGGCGGCCAAGACCGCCG
CGGAAAAGGACGCGAGAATCGCGGAAGAGGACCAGGAAGATGCGGGGGCC
GTGGCGCCGGGATTGGCGCCTAAGATGAGCGCGGCGAAGGCGGCCAAGAC
CGCCGCGGAAAAGGACGCGAGAATCGCGGCAGAATTGGAGACACGATTGC
AGCTGGGCGAGACGGCTGAACAACGACGTCTGCGCGAACGGAACCGTGTG
GAGGAGGCCGACAACGACCTGACGGAGGACTTGTTCGGCGGAGGAGGCGC
GCGGGGGCAGGGAGCGGGGGGCGGGTTGTCTGGCCTCGCGCTAAAGAATA
TGCAGGCAGAATTGGAGACACGATTGCAGCTGGGCGAGACGGCTGAACAA
CGACGTCTGCGCGAACGGAACCGTGTGGAGGAGGCCGACAACGACCTGAC
GGAGGACTTGTTCGGCGGAGGAGGCGCGCGGGGGCAGGGAGCGGGGGGCG
GGTTGTCTGGCCTCGCGCTAAAGAATATGCAGGACCACGTGAAGCTGGCG
ATTGAGCTCGCCGAGAGGATGGACTCCAGCAAACCCGCACACATGGCGGC
TTTCCTGAAGGACCACGTGAAGCTGGCGATTGAGCTCGCCGAGAGGATGG
ACTCCAGCAAACCCGCACACATGGCGGCTTTCCTGAAGGAGCTCGTTACG
AAACTTTCGTCCAAGATGACGGCGGACGGGCTCACCGACCTGGTGAACCA
CACCACCATGTTCCGCGATGAGAAGCGCCAGGCAGAAGAAAGAATCGCGA
GCGCGAAGGCGAACAATACGAACGTCATCGCGAACCAGCGCGCCAACAAG
AAGAAGTCCATCAAGAAGAAGAAGGAGCTCGTTACGAAACTTTCGTCCAA
GATGACGGCGGACGGGCTCACCGACCTGGTGAACCACACCACCATGTTCC
GCGATGAGAAGCGCCAGGCAGAAGAAAGAATCGCGAGCGCGAAGGCGAAC
AATACGAACGTCATCGCGAACCAGCGCGCCAACAAGAAGAAGTCCATCAA
GAAGAAGAAGGCACACTCGGATGTTTTTGGCGGTGACTTCGACGGCGACG
GTATCGACAGTGTCGGGATGGATTACGAGAGCAAGTACGACGACTTCATG
TAGGCACACTCGGATGTTTTTGGCGGTGACTTCGACGGCGACGGTATCGA
CAGTGTCGGGATGGATTACGAGAGCAAGTACGACGACTTCATGTAG
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