mRNA_E-siliculosus-1a_F_contig1117.781.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE) HSP 1 Score: 939 bits (2427), Expect = 0.000e+0 Identity = 572/652 (87.73%), Postives = 576/652 (88.34%), Query Frame = 1
Query: 262 MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXXXFAPGISNRRGRHASPTSETPANGFDGGGRNLSVSGXXXXXXXSSS---KASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRFVSVKSSSASRRKSAPLPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPPPGLPGHGQHDALTATGASAGAPFGKP--LENGSSVGFVAPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDHQQ------------------------MPFVSQAPGVANGXXXXXXXXXXXXXXXX-FHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGANAG 2127
MNQQPQ R LPSFSGLS AVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXX GIS+RRGRHASPT ET ANGFDGGGRNL XXXXXXX KASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKIL+SRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGR +SVKSSSASRRKSAPLPQLP XXXXXXXXXXXXXXXXXX TSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPP GLPGHGQHDALTATGAS GAPFGKP LENGSSVGFV PPSAGFNNGGAIIRAAMSMLPPGGMPTPSHD MPFVSQAPGVAN XXXXXXXXXXXXXXXX FHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGA+ G
Sbjct: 1 MNQQPQARALPSFSGLSLAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXX--------GISSRRGRHASPT-ETSANGFDGGGRNLXXXXXXXXXXXXXXXXXKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILVSRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRLLSVKSSSASRRKSAPLPQLPPLPXXXXXXXXXXXXXXXXXX--------------TSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPP-GLPGHGQHDALTATGASPGAPFGKPPPLENGSSVGFVGPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDPNDRLQXXXXXXXXXXXXXXXXXXXXXMPFVSQAPGVANXXXXXXXXXXXXXXXXXXFHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGASVG 628
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Match: D7FRL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL6_ECTSI) HSP 1 Score: 664 bits (1712), Expect = 8.260e-234 Identity = 372/384 (96.88%), Postives = 373/384 (97.14%), Query Frame = 1
Query: 262 MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXXXFAPGISNRRGRHASPTSETPANGFDGGGRNLSVSGXXXXXXXSSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 1413
MNQQPQ R LPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXX A GIS+RRGRHASPTSETPANGFDGGGRNLS S XXXXXX SSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPA YVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGV ANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML
Sbjct: 1 MNQQPQARALPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXV--ATGISSRRGRHASPTSETPANGFDGGGRNLSGS-XXXXXXPSSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAVYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVTANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 381 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1117.781.1 >prot_E-siliculosus-1a_F_contig1117.781.1 ID=prot_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=622bp MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQQQQDNNNSSTAback to top mRNA from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1117.781.1 ID=mRNA_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4919bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ >mRNA_E-siliculosus-1a_F_contig1117.781.1 ID=mRNA_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |