mRNA_E-siliculosus-1a_F_contig1117.781.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1117.781.1
Unique NamemRNA_E-siliculosus-1a_F_contig1117.781.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE)

HSP 1 Score: 939 bits (2427), Expect = 0.000e+0
Identity = 572/652 (87.73%), Postives = 576/652 (88.34%), Query Frame = 1
Query:  262 MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXXXFAPGISNRRGRHASPTSETPANGFDGGGRNLSVSGXXXXXXXSSS---KASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRFVSVKSSSASRRKSAPLPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPPPGLPGHGQHDALTATGASAGAPFGKP--LENGSSVGFVAPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDHQQ------------------------MPFVSQAPGVANGXXXXXXXXXXXXXXXX-FHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGANAG 2127
            MNQQPQ R LPSFSGLS AVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXX        GIS+RRGRHASPT ET ANGFDGGGRNL    XXXXXXX      KASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKIL+SRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGR +SVKSSSASRRKSAPLPQLP   XXXXXXXXXXXXXXXXXX              TSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPP GLPGHGQHDALTATGAS GAPFGKP  LENGSSVGFV PPSAGFNNGGAIIRAAMSMLPPGGMPTPSHD                           MPFVSQAPGVAN XXXXXXXXXXXXXXXX FHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGA+ G
Sbjct:    1 MNQQPQARALPSFSGLSLAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXX--------GISSRRGRHASPT-ETSANGFDGGGRNLXXXXXXXXXXXXXXXXXKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILVSRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRLLSVKSSSASRRKSAPLPQLPPLPXXXXXXXXXXXXXXXXXX--------------TSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPP-GLPGHGQHDALTATGASPGAPFGKPPPLENGSSVGFVGPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDPNDRLQXXXXXXXXXXXXXXXXXXXXXMPFVSQAPGVANXXXXXXXXXXXXXXXXXXFHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGASVG 628          
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Match: D7FRL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL6_ECTSI)

HSP 1 Score: 664 bits (1712), Expect = 8.260e-234
Identity = 372/384 (96.88%), Postives = 373/384 (97.14%), Query Frame = 1
Query:  262 MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXXXFAPGISNRRGRHASPTSETPANGFDGGGRNLSVSGXXXXXXXSSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 1413
            MNQQPQ R LPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXX   A GIS+RRGRHASPTSETPANGFDGGGRNLS S XXXXXX SSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPA YVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGV ANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML
Sbjct:    1 MNQQPQARALPSFSGLSSAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXXXXV--ATGISSRRGRHASPTSETPANGFDGGGRNLSGS-XXXXXXPSSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAVYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVTANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 381          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1117.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5G3_9PHAE0.000e+087.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRL6_ECTSI8.260e-23496.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1117contigE-siliculosus-1a_F_contig1117:6006..10924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1866
Model size2127
Exons7
Ec32 orthologEc-12_002580.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-12_002580.2
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1117.781.1prot_E-siliculosus-1a_F_contig1117.781.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1117 6267..10924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.5181384-UTR-E-siliculosus-1a_F_contig1117:6005..62661622927622.5181384-UTR-E-siliculosus-1a_F_contig1117:6005..6266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1117 6006..6266 +
1696318614.1817646-UTR-E-siliculosus-1a_F_contig1117:6005..62661696318614.1817646-UTR-E-siliculosus-1a_F_contig1117:6005..6266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1117 6006..6266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.5310507-CDS-E-siliculosus-1a_F_contig1117:6266..67191622927622.5310507-CDS-E-siliculosus-1a_F_contig1117:6266..6719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 6267..6719 +
1696318614.1899438-CDS-E-siliculosus-1a_F_contig1117:6266..67191696318614.1899438-CDS-E-siliculosus-1a_F_contig1117:6266..6719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 6267..6719 +
1622927622.5421662-CDS-E-siliculosus-1a_F_contig1117:7747..78661622927622.5421662-CDS-E-siliculosus-1a_F_contig1117:7747..7866Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 7748..7866 +
1696318614.1988025-CDS-E-siliculosus-1a_F_contig1117:7747..78661696318614.1988025-CDS-E-siliculosus-1a_F_contig1117:7747..7866Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 7748..7866 +
1622927622.5530345-CDS-E-siliculosus-1a_F_contig1117:8324..85141622927622.5530345-CDS-E-siliculosus-1a_F_contig1117:8324..8514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 8325..8514 +
1696318614.2084234-CDS-E-siliculosus-1a_F_contig1117:8324..85141696318614.2084234-CDS-E-siliculosus-1a_F_contig1117:8324..8514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 8325..8514 +
1622927622.5657022-CDS-E-siliculosus-1a_F_contig1117:8872..90641622927622.5657022-CDS-E-siliculosus-1a_F_contig1117:8872..9064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 8873..9064 +
1696318614.2161543-CDS-E-siliculosus-1a_F_contig1117:8872..90641696318614.2161543-CDS-E-siliculosus-1a_F_contig1117:8872..9064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 8873..9064 +
1622927622.5772223-CDS-E-siliculosus-1a_F_contig1117:9713..99111622927622.5772223-CDS-E-siliculosus-1a_F_contig1117:9713..9911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 9714..9911 +
1696318614.227226-CDS-E-siliculosus-1a_F_contig1117:9713..99111696318614.227226-CDS-E-siliculosus-1a_F_contig1117:9713..9911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 9714..9911 +
1622927622.5874114-CDS-E-siliculosus-1a_F_contig1117:10147..106391622927622.5874114-CDS-E-siliculosus-1a_F_contig1117:10147..10639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 10148..10639 +
1696318614.2357278-CDS-E-siliculosus-1a_F_contig1117:10147..106391696318614.2357278-CDS-E-siliculosus-1a_F_contig1117:10147..10639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 10148..10639 +
1622927622.6049354-CDS-E-siliculosus-1a_F_contig1117:10702..109241622927622.6049354-CDS-E-siliculosus-1a_F_contig1117:10702..10924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 10703..10924 +
1696318614.244907-CDS-E-siliculosus-1a_F_contig1117:10702..109241696318614.244907-CDS-E-siliculosus-1a_F_contig1117:10702..10924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1117 10703..10924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1117.781.1

>prot_E-siliculosus-1a_F_contig1117.781.1 ID=prot_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=622bp
MNQQPQTRVLPSFSGLSSAVNDARDYENSRGSRNGSEVQQQQDNNNSSTA
SNSNNNNFAPGISNRRGRHASPTSETPANGFDGGGRNLSVSGGGGGGVPS
SSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQED
DVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAAL
LCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDG
DGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGL
LKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGD
IDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRFVSVKSSS
ASRRKSAPLPQLPPPPSQQQQQQQQQQQQQQLHQQQQQLLLQQQQQPPTS
TPGLMPWRNGDPPVAMPAAPGVHGRAPPPPPGLPGHGQHDALTATGASAG
APFGKPLENGSSVGFVAPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDHQ
QMPFVSQAPGVANGGAAAAAAAAAAPPPPPFHDHNALSAAAPEILTQMGY
RRAPAFGPEGIWGANDAGANAG
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1117:6006..10924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1117.781.1 ID=mRNA_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4919bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCTCTCTCCCAAAAACCAATCTTCCATCCCCCGTGGGTACTCGGCGA GGGCGAGGGCTAAGGCTAGGGGCTGGGTAGCGGGGCCGAGACTAGGGTGC TCGCGATCTGCCGGGTCCACGCACTCTCTCCGTATTTTAGGCGTGCGTGT GAGCACGGAGAGGAAAATTGCGCTCTCCGCGCGGAGAGGATCTCGGGAGG GGGAGACAGTGAAAAATCGTAGAGGCCACAACGCACCCAATAGCGGCGCG CGGCGAAAAGAATGAACCAACAACCACAAACCCGCGTGCTGCCCAGCTTC TCCGGGCTGTCCTCGGCCGTCAACGACGCGCGGGACTACGAGAACAGTCG GGGGTCGAGAAACGGCTCCGAGGTACAGCAGCAGCAGGACAACAACAACA GCAGCACCGCCTCCAACAGCAACAACAACAATTTCGCCCCCGGCATCAGC AACAGGCGCGGCCGACATGCGTCTCCCACGTCGGAGACTCCCGCGAATGG GTTCGACGGCGGCGGCAGGAACCTGTCCGTCTCCGGCGGCGGCGGCGGCG GGGTGCCCAGCAGCAGCAAGGCGAGCGGAGCCACGGGCGCCCTGCTGCTG CAGGATACCTTGTCGCCTCTGCTCGAGGAGGTGGACGCGCTGTTCGAGCG GAGCAAGGACATCGTCGCTAGCCTCAAGGCGCCCGGCGGGGGAAACAAGC CGCAGGAGGACGATGTGAGTACATACACATGTGTATATATGCGCACTATT ATACTGCTGTCTTTACTCGACATGTTCCAAGGGTAAGGGTTGAGTAGTCT GCACAAACCGCTGCTGCTGCGGGCGTATTGTGTTTGAGCCGGGTGAAATG ATTAAATAGCTGAAACATTAGGGTTGATCGTGGACGACTGCTGCTGGGTG TGTACTATCACCAGCATCTACTCATCAAATATCGCGTCCATTTAGACTCG ACTACAATACACTGGCTGTATGCGAGCTCTGACAATCCTCTCAAGTCCCC TTTGTTCGTTCATGTGTGTTGCAGTGGCACCCGTTTGTGCAAGAGAGAAA GACTTACTATTTAAATACGCGCGAGAAAGATCATCAACGGACATACCAAT ATTCTACGAGAGGACCGGGCCTCATGTACAGACCGTCTTGATTTCGAAAG AGAGACTTTCTGCGAATCAGCTGCACAATATGCGTCGAAAGCGAAGTACC ACATTTTCCCATTCACCGTCGTCCCCCCCACGGCTGTGAAACGGCTGAAT GAAATAGCTCCCCGCTGCAGTTCGTCTCGCTCCATGAGAGCAGACTCAAA AAATGCGTTCAAGTGCTATTATAATAGAGGGGCAGTCGTAAAATTCAATT TTTTTGAAGTGTTGTCGTTCACAGCAGTCCTGAGACATCATTGGTCAATG GGGATCACTACAAGCAGTACCTGCGTTCCCGCTTGCTGCTAAACATGCAT TTTTGCCTCGATATTCTCGAAAATAAATATTGTACGCTTTCTAGAGAAAA AAAAAGTGTTGTATGGCAAGGATTTTCCACCTCCGGATATTTTTCTGCTT ACATAGAAACGAAATGCGCTGTGAACCTTACGGTTGATGTTGAAGATCCA ACCCTTCTTCGGAATCATCCTTGAAAAAGGACAAAAGGACACCCACACAC AGCGTGGATCTCGACAGGGAGTCTGACGACACAATGTGCGAGACATTCTG GTGTGACGTTCACAATGTGTTTACATGAATACCGCAAAAAAGGTGGAGGT GGAGATCATGGAGAGGATGGCAGAGGCGTGGCAGGCCATCGAGGCCAAGA ATGCCAGACACGACACGTCTCACAAGCTTCACAGAGAGAAGCCAATGTTC TGCATGGACAGGTTTGTGTGAATGTGTGCTTTTCACGACAGTTTTTTCCA TGCTGCTTCTTTATGAGCGGGTCGGGCGTTTACGTGGTACGAGTGCACCG CTGCTGCTGTTACTCTCCGCGCTCGAGCTAGATGGCTGCTAGCAGCAGGT TGTCCAGCACAGCCGAGGCTGTCGACGGACGTCAACACTTAAGCCACGAC GTATAGGCCAGCCTGAAGAGCTGCATACAGCAGTACACTCACCGATTTCC AGCGGCATGGCGGGAATAAAAAGTGGGCACATGATATTTACCATGACGCC ACCGCCACTTACGGTGCAAAGCACTGGTATGTCTGTATCAACGCTTGTTG AGCGCCGTGTCGCTGCCCCCGCTTGTAACCGTAGCCCCAATCGTCGACCT TCGTTTTCGCCCCGGTTTGCCGCACTACTATCTGTGCCTCTCGCTGTCGG CACGACAACCTTTCGACAGCCTGGGGAAGCGGATAAAGGCGGCGCTTCTT TGCAAGACCCTTCCACCGAACGACAACCCGGCCGAGTACGTTAACGGCTC CAGCAACGCCCCGAGCCGCAACCTCGTAACGGCCATCAAGCTGGCCGGCT ACGTGGTGCACTGCGGGACGGGGGGCAAGGTGTCGGCGGTGGACGGTGAT GGCCGCGAGGTGACAGCACGTGAAAGAGGATGGCTTTCTCAACACATACA GCAGGCAGTGCAGCAGTCAGAAAACAACGAGTGCTGTGTTTCTCGGCTCT CTTGACGAAACATGTCTCTGGTCTCACGTTCCAAGCTTTCATTTGGTCCT CTTTTTTACTTCTCGGCGACGGCGGTGTTTCGATGCGCTTCGGGAGCTTA CGAATGGCCAATAGAGATGCACACAAGGTTGCGCTGGCAGCTCTGTGTTG GAGTTGGTGCGTGATGGCTCCTTCCTTCTACCCCGCACACATCTGCGGCT TAACTTCCACGTCGTGACATGCCATGCCGTTCGTTGCGTGTGTACCGTGG GCTGTTGTCTTTGGCAGCCCCCGTCCAAGTACACCAAGGAAGAGTTCCAT AACAACGTCCTGCCGAGGGCAGCGGAGAACCAGCCTCCACGCATCTTGAA CGAGCTTAGGCAGCTGTCGTGCCGCCTCGTGGCGAGCGGCATCGCCAAGG GCCTGCTGAAGCAGGAGGATCTGCCGGAGATCCGCAAGATCCTCATCAGC CGCTTTGAGGTGAGTCTCTCAGTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACGGCTGCGGCTGCGGCTGT GGCCTCTGGCTGTTGTTTTCCAGCTGCTGCTGGTAGATGTGATGACGAGA TCGTGCGGTGTTAAATTGGCCGCTATTGCCTTGTAGCACGTGCGCAGCAC CGCAAGCAGCGCTTGTCATGCGCGCCATGTCGTTCAGCACTGCATGCCGA CGACATTTTCGTTTTCTGCCCCCGTGACAAGACTTGTCTACCGGTGTCTC ACTGAAAGTGGTTTGGTTTATGCAATGCCACACAACGTCGCGGTACGCCA TACCGACCGCGTATTGTTTTTTGTACGTAGTTGCGATTATGCCAAACGTT GCCCGCCTTTTGATGCAAGTCATCACCCACAGCACTCCCTTCACATAAGG AAACCCTCCCCCGTGTAAGTCGCTACGCTGAGGCACGACGATCTGCATGG CAGGCATGCAGCGCCAGCGGCGCACGGTTTGTTCCGTTTTGTGCTTGCGA TTGCAACGCTGGTGCATACCTCGCTCGATGGGATGGATGTGTATATATTC CGTCGCTTTATTGAAGTAAATTTTTGCTGCCCTGGGAACATTTTGCATGG GGGTGTAGGACGGCGGGATGCACTTCCTGGCCGGCGGCGACGCAGCTTTC GCGCGATTCATCGGGGTTGCGGCCAACGCTCACAAGCTGCTCGAGCGGGG CGACATCGACGACTTCGTGGCCTTCCACGAGCGGGTGGTGAAGCTCGTGG GCATGTGTCGCAACAGGGTGCGCCGCGCCGCGTATGCGACGTCGAAGAGC ATGCTGGTGAGTTGTTGTTCGTAGGCCGTACTTCTGTCTCGGTTCTGTTG TTGGAGCTACAACCGCCTTGAGCACGTGGTGCTGTGCCGTGGGGATAGGA CATGCTGTGGCAAGGGCACGGGCGTGGTAACTCGCCCCTCGCGAGTGGTA GCGTTCCGTGAGGCACTGGTGTTGTTCGTTCCCGATTAATCCTTTTTCGC GCCCGCCATGTCGCGTGGGTCCTGTGTGTCCTTGACTAGCAGGCGCAAGC AAACGGCAACGGCCGCTTCGTCTCCGTCAAGTCGTCAAGCGCGTCTCGCC GCAAGTCCGCGCCGCTGCCGCAACTGCCGCCGCCGCCGTCGCAGCAGCAA CAGCAGCAGCAGCAGCAGCAACAACAACAACAACTACATCAGCAACAGCA GCAGCTACTGCTACAGCAGCAGCAACAACCACCAACGTCGACACCGGGCT TGATGCCATGGCGAAACGGAGACCCACCAGTGGCGATGCCCGCCGCTCCG GGGGTACACGGCCGAGCTCCACCACCACCACCGGGGCTCCCTGGCCATGG GCAACACGATGCCCTCACCGCTACCGGCGCATCCGCCGGAGCTCCCTTCG GGAAGCCGCTAGAGAACGGGAGCAGCGTGGGGTTCGTCGCCCCGCCTTCT GCTGGGTTCAACAACGGCGGCGCTATCATCCGAGCCGCCATGTCGATGCT TCCCCCCGGCGGCATGCCGACCCCTTCGCACGACGCGAGCGACCGCTCGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT CAGCAGATGCCGTTTGTGTCGCAAGCCCCGGGCGTGGCGAACGGTGGGGC CGCTGCTGCCGCCGCCGCCGCCGCCGCCCCGCCGCCGCCGCCGTTCCACG ACCACAACGCGCTCAGCGCCGCCGCTCCCGAGATCTTGACACAGATGGGC TATCGGCGGGCACCCGCGTTCGGCCCCGAAGGGATCTGGGGCGCCAATGA TGCCGGTGCAAACGCGGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1117:6006..10924+

>mRNA_E-siliculosus-1a_F_contig1117.781.1 ID=mRNA_E-siliculosus-1a_F_contig1117.781.1|Name=mRNA_E-siliculosus-1a_F_contig1117.781.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1117:6006..10924+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACCAACAACCACAAACCCGCGTGCTGCCCAGCTTCTCCGGGCTGTC
CTCGGCCGTCAACGACGCGCGGGACTACGAGAACAGTCGGGGGTCGAGAA
ACGGCTCCGAGGTACAGCAGCAGCAGGACAACAACAACAGCAGCACCGCC
TCCAACAGCAACAACAACAATTTCGCCCCCGGCATCAGCAACAGGCGCGG
CCGACATGCGTCTCCCACGTCGGAGACTCCCGCGAATGGGTTCGACGGCG
GCGGCAGGAACCTGTCCGTCTCCGGCGGCGGCGGCGGCGGGGTGCCCAGC
AGCAGCAAGGCGAGCGGAGCCACGGGCGCCCTGCTGCTGCAGGATACCTT
GTCGCCTCTGCTCGAGGAGGTGGACGCGCTGTTCGAGCGGAGCAAGGACA
TCGTCGCTAGCCTCAAGGCGCCCGGCGGGGGAAACAAGCCGCAGGAGGAC
GATATGAACCAACAACCACAAACCCGCGTGCTGCCCAGCTTCTCCGGGCT
GTCCTCGGCCGTCAACGACGCGCGGGACTACGAGAACAGTCGGGGGTCGA
GAAACGGCTCCGAGGTACAGCAGCAGCAGGACAACAACAACAGCAGCACC
GCCTCCAACAGCAACAACAACAATTTCGCCCCCGGCATCAGCAACAGGCG
CGGCCGACATGCGTCTCCCACGTCGGAGACTCCCGCGAATGGGTTCGACG
GCGGCGGCAGGAACCTGTCCGTCTCCGGCGGCGGCGGCGGCGGGGTGCCC
AGCAGCAGCAAGGCGAGCGGAGCCACGGGCGCCCTGCTGCTGCAGGATAC
CTTGTCGCCTCTGCTCGAGGAGGTGGACGCGCTGTTCGAGCGGAGCAAGG
ACATCGTCGCTAGCCTCAAGGCGCCCGGCGGGGGAAACAAGCCGCAGGAG
GACGATGTGGAGGTGGAGATCATGGAGAGGATGGCAGAGGCGTGGCAGGC
CATCGAGGCCAAGAATGCCAGACACGACACGTCTCACAAGCTTCACAGAG
AGAAGCCAATGTTCTGCATGGACAGGTGGAGGTGGAGATCATGGAGAGGA
TGGCAGAGGCGTGGCAGGCCATCGAGGCCAAGAATGCCAGACACGACACG
TCTCACAAGCTTCACAGAGAGAAGCCAATGTTCTGCATGGACAGCCTGGG
GAAGCGGATAAAGGCGGCGCTTCTTTGCAAGACCCTTCCACCGAACGACA
ACCCGGCCGAGTACGTTAACGGCTCCAGCAACGCCCCGAGCCGCAACCTC
GTAACGGCCATCAAGCTGGCCGGCTACGTGGTGCACTGCGGGACGGGGGG
CAAGGTGTCGGCGGTGGACGGTGATGGCCGCGAGCCTGGGGAAGCGGATA
AAGGCGGCGCTTCTTTGCAAGACCCTTCCACCGAACGACAACCCGGCCGA
GTACGTTAACGGCTCCAGCAACGCCCCGAGCCGCAACCTCGTAACGGCCA
TCAAGCTGGCCGGCTACGTGGTGCACTGCGGGACGGGGGGCAAGGTGTCG
GCGGTGGACGGTGATGGCCGCGAGCCCCCGTCCAAGTACACCAAGGAAGA
GTTCCATAACAACGTCCTGCCGAGGGCAGCGGAGAACCAGCCTCCACGCA
TCTTGAACGAGCTTAGGCAGCTGTCGTGCCGCCTCGTGGCGAGCGGCATC
GCCAAGGGCCTGCTGAAGCAGGAGGATCTGCCGGAGATCCGCAAGATCCT
CATCAGCCGCTTTGAGCCCCCGTCCAAGTACACCAAGGAAGAGTTCCATA
ACAACGTCCTGCCGAGGGCAGCGGAGAACCAGCCTCCACGCATCTTGAAC
GAGCTTAGGCAGCTGTCGTGCCGCCTCGTGGCGAGCGGCATCGCCAAGGG
CCTGCTGAAGCAGGAGGATCTGCCGGAGATCCGCAAGATCCTCATCAGCC
GCTTTGAGGACGGCGGGATGCACTTCCTGGCCGGCGGCGACGCAGCTTTC
GCGCGATTCATCGGGGTTGCGGCCAACGCTCACAAGCTGCTCGAGCGGGG
CGACATCGACGACTTCGTGGCCTTCCACGAGCGGGTGGTGAAGCTCGTGG
GCATGTGTCGCAACAGGGTGCGCCGCGCCGCGTATGCGACGTCGAAGAGC
ATGCTGGACGGCGGGATGCACTTCCTGGCCGGCGGCGACGCAGCTTTCGC
GCGATTCATCGGGGTTGCGGCCAACGCTCACAAGCTGCTCGAGCGGGGCG
ACATCGACGACTTCGTGGCCTTCCACGAGCGGGTGGTGAAGCTCGTGGGC
ATGTGTCGCAACAGGGTGCGCCGCGCCGCGTATGCGACGTCGAAGAGCAT
GCTGGCGCAAGCAAACGGCAACGGCCGCTTCGTCTCCGTCAAGTCGTCAA
GCGCGTCTCGCCGCAAGTCCGCGCCGCTGCCGCAACTGCCGCCGCCGCCG
TCGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACTACA
TCAGCAACAGCAGCAGCTACTGCTACAGCAGCAGCAACAACCACCAACGT
CGACACCGGGCTTGATGCCATGGCGAAACGGAGACCCACCAGTGGCGATG
CCCGCCGCTCCGGGGGTACACGGCCGAGCTCCACCACCACCACCGGGGCT
CCCTGGCCATGGGCAACACGATGCCCTCACCGCTACCGGCGCATCCGCCG
GAGCTCCCTTCGGGAAGCCGCTAGAGAACGGGAGCAGCGTGGGGTTCGTC
GCCCCGCCTTCTGCTGGGTTCAACAACGGCGGCGCTATCATCCGAGCCGC
CATGTCGATGCTTCCCCCCGGCGGCATGCCGACCCCTTCGCACGACGCGC
AAGCAAACGGCAACGGCCGCTTCGTCTCCGTCAAGTCGTCAAGCGCGTCT
CGCCGCAAGTCCGCGCCGCTGCCGCAACTGCCGCCGCCGCCGTCGCAGCA
GCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACTACATCAGCAAC
AGCAGCAGCTACTGCTACAGCAGCAGCAACAACCACCAACGTCGACACCG
GGCTTGATGCCATGGCGAAACGGAGACCCACCAGTGGCGATGCCCGCCGC
TCCGGGGGTACACGGCCGAGCTCCACCACCACCACCGGGGCTCCCTGGCC
ATGGGCAACACGATGCCCTCACCGCTACCGGCGCATCCGCCGGAGCTCCC
TTCGGGAAGCCGCTAGAGAACGGGAGCAGCGTGGGGTTCGTCGCCCCGCC
TTCTGCTGGGTTCAACAACGGCGGCGCTATCATCCGAGCCGCCATGTCGA
TGCTTCCCCCCGGCGGCATGCCGACCCCTTCGCACGACCATCAGCAGATG
CCGTTTGTGTCGCAAGCCCCGGGCGTGGCGAACGGTGGGGCCGCTGCTGC
CGCCGCCGCCGCCGCCGCCCCGCCGCCGCCGCCGTTCCACGACCACAACG
CGCTCAGCGCCGCCGCTCCCGAGATCTTGACACAGATGGGCTATCGGCGG
GCACCCGCGTTCGGCCCCGAAGGGATCTGGGGCGCCAATGATGCCGGTGC
AAACGCGGGGCATCAGCAGATGCCGTTTGTGTCGCAAGCCCCGGGCGTGG
CGAACGGTGGGGCCGCTGCTGCCGCCGCCGCCGCCGCCGCCCCGCCGCCG
CCGCCGTTCCACGACCACAACGCGCTCAGCGCCGCCGCTCCCGAGATCTT
GACACAGATGGGCTATCGGCGGGCACCCGCGTTCGGCCCCGAAGGGATCT
GGGGCGCCAATGATGCCGGTGCAAACGCGGGG
back to top