mRNA_E-siliculosus-1a_F_contig1115.772.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1115.772.1
Unique NamemRNA_E-siliculosus-1a_F_contig1115.772.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1115.772.1 vs. uniprot
Match: D8LU35_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU35_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 7.900e-56
Identity = 94/105 (89.52%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 MCSRMFPQHAIESHAWECRPPPADDGAMSTVPSSTGRASATEAACNTFLDNSEEFQARNHTAEQQPKATAAETYLIPAEGGNSNCVDSGAPKYVPQASEGKNAMQ 315
            MCSRMFPQHAIESHAWECRPPPADDGAMSTVPSSTGRASATEAACNT LDNS EFQAR+HT E QPKATAA TYLIP EGGNSNC D GAPK VPQ SEGKNAMQ
Sbjct:    1 MCSRMFPQHAIESHAWECRPPPADDGAMSTVPSSTGRASATEAACNTLLDNSGEFQARHHTTELQPKATAAGTYLIPPEGGNSNCADRGAPKQVPQESEGKNAMQ 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1115.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU35_ECTSI7.900e-5689.52Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1115contigE-siliculosus-1a_F_contig1115:6230..6547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size318
Model size319
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2C0F4@1,2QUQ4@2759
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
Seed eggNOG ortholog2880.D8LU35
Seed ortholog evalue4.2e-47
Seed ortholog score193.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927620.3367174-CDS-E-siliculosus-1a_F_contig1115:6229..65471622927620.3367174-CDS-E-siliculosus-1a_F_contig1115:6229..6547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1115 6230..6547 +
1696318613.3401058-CDS-E-siliculosus-1a_F_contig1115:6229..65471696318613.3401058-CDS-E-siliculosus-1a_F_contig1115:6229..6547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1115 6230..6547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1115.772.1prot_E-siliculosus-1a_F_contig1115.772.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1115 6230..6547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1115.772.1

>prot_E-siliculosus-1a_F_contig1115.772.1 ID=prot_E-siliculosus-1a_F_contig1115.772.1|Name=mRNA_E-siliculosus-1a_F_contig1115.772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
MCSRMFPQHAIESHAWECRPPPADDGAMSTVPSSTGRASATEAACNTFLD
NSEEFQARNHTAEQQPKATAAETYLIPAEGGNSNCVDSGAPKYVPQASEG
KNAMQA
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mRNA from alignment at E-siliculosus-1a_F_contig1115:6230..6547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1115.772.1 ID=mRNA_E-siliculosus-1a_F_contig1115.772.1|Name=mRNA_E-siliculosus-1a_F_contig1115.772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1115:6230..6547+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTTCAAGGATGTTCCCCCAGCATGCGATCGAGAGTCACGCGTGGGA
ATGTCGGCCGCCCCCCGCGGATGACGGAGCAATGTCTACAGTCCCGTCGA
GCACGGGCCGAGCTTCAGCAACGGAGGCAGCTTGCAACACCTTCCTGGAC
AACAGCGAAGAATTCCAGGCCCGCAATCACACCGCGGAGCAGCAGCCCAA
AGCTACCGCGGCTGAAACATATCTGATCCCAGCTGAAGGAGGAAATAGCA
ACTGCGTTGATAGTGGAGCACCCAAGTACGTGCCGCAGGCGAGCGAGGGC
AAGAATGCGATGCAGGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1115:6230..6547+

>mRNA_E-siliculosus-1a_F_contig1115.772.1 ID=mRNA_E-siliculosus-1a_F_contig1115.772.1|Name=mRNA_E-siliculosus-1a_F_contig1115.772.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1115:6230..6547+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTTCAAGGATGTTCCCCCAGCATGCGATCGAGAGTCACGCGTGGGA
ATGTCGGCCGCCCCCCGCGGATGACGGAGCAATGTCTACAGTCCCGTCGA
GCACGGGCCGAGCTTCAGCAACGGAGGCAGCTTGCAACACCTTCCTGGAC
AACAGCGAAGAATTCCAGGCCCGCAATCACACCGCGGAGCAGCAGCCCAA
AGCTACCGCGGCTGAAACATATCTGATCCCAGCTGAAGGAGGAAATAGCA
ACTGCGTTGATAGTGGAGCACCCAAGTACGTGCCGCAGGCGAGCGAGGGC
AAGAATGCGATGCAGGCAATGTGTTCAAGGATGTTCCCCCAGCATGCGAT
CGAGAGTCACGCGTGGGAATGTCGGCCGCCCCCCGCGGATGACGGAGCAA
TGTCTACAGTCCCGTCGAGCACGGGCCGAGCTTCAGCAACGGAGGCAGCT
TGCAACACCTTCCTGGACAACAGCGAAGAATTCCAGGCCCGCAATCACAC
CGCGGAGCAGCAGCCCAAAGCTACCGCGGCTGAAACATATCTGATCCCAG
CTGAAGGAGGAAATAGCAACTGCGTTGATAGTGGAGCACCCAAGTACGTG
CCGCAGGCGAGCGAGGGCAAGAATGCGATGCAGGCA
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