mRNA_E-siliculosus-1a_F_contig11141.769.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 371 bits (952), Expect = 6.870e-128 Identity = 184/205 (89.76%), Postives = 195/205 (95.12%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSASPGRSNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 SEYLTTL GLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGK+LG+VPFDNIDTLMQELRNFEAVKGG TTPTRR AQVKGSSGGRQGQ+R+GGGGTGSGGTNTFRSASPGR +GGYGGRRVMTV++++ EDECAEF+RV+DIH SPRTNSQ CPFFAWFTSVEEKDRHRRAFGSRCL CGSEGHFVRDCDKGYI Sbjct: 46 SEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSGGRQGQKRDGGGGTGSGGTNTFRSASPGRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 353 bits (905), Expect = 3.470e-119 Identity = 184/210 (87.62%), Postives = 191/210 (90.95%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNT-----FRSASPGRSNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 SEYLTTLQGLVHNVRNLG+VTPQDNTIQLAVRESVSDQYSVLTAS+FKGKEL VV FDNIDTLM ELRNFEAVKGG TTPTRRMAQVK SSG RQGQR GGG TGSGGTNT RSASPGRS+GGYGGR VMTVEDM+YEDECAEF+RV+DIHA+PRTNSQA CPFFAWFTSVEEKDRHRRAFG RCLNCGSEGHFVRDCDKGYI Sbjct: 100 SEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQVKSSSGWRQGQRGGGGGRTGSGGTNTRVMTGXRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFQRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYI 308
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 358 bits (920), Expect = 9.930e-119 Identity = 184/205 (89.76%), Postives = 190/205 (92.68%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSASPGRSNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 SEYLT LQGLV NVRNLG+VTPQDNTIQLAVRESVSDQYSVLTASVFKGKE GVVPFDNIDTLM ELRNFEAVKGG TTPTR MAQVK SSG RQGQR GGG TGSGGTNTFRSASPGRS+GGYGGR VMTVEDM+YEDECAEFKRV+DIHA+PRTNSQA CPFFAWFTSVEEKDRHR+AFG RCLNCGSEGHFVRDCDKGYI Sbjct: 304 SEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQVKSSSGWRQGQRGCGGGRTGSGGTNTFRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYI 507
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 310 bits (795), Expect = 1.790e-103 Identity = 163/204 (79.90%), Postives = 170/204 (83.33%), Query Frame = 3 Query: 138 EYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSASPGRSNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 EYLTTLQGL HNVRNL +VTPQDNTIQLAVRE VSDQYSVLTASV KGKELGVV FDN PTRRMAQVKGSSGGRQGQR +GGG TGSGG NTFRSASPGRS+GGYGGRRVMTVEDM+YED+C EFKRV+ IH+SPRTNSQ N CPFFAWFTSVEEKDRHRRAFGSRCLNCGSEG FVRDC KGYI Sbjct: 70 EYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNX-------------------PTRRMAQVKGSSGGRQGQRCDGGGRTGSGGGNTFRSASPGRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRTNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYI 254
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.160e-73 Identity = 139/205 (67.80%), Postives = 146/205 (71.22%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSASPGRSNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 SEYLTTLQGLVHNVRNL IVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG RNF+AVKGGG FRSASPGRS+GGYGGR VMTVEDM+YEDECAEFKRV+DIHA+PRTNSQA CPFFAWFTSVEEKDRHRRAFG CLNCGSEGHFVR +G + Sbjct: 498 SEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGGGKDSDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRSASPGRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLTCLNCGSEGHFVRIVIRGTL 687
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE) HSP 1 Score: 171 bits (433), Expect = 2.920e-48 Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 3 Query: 138 EYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGS 455 EYLTTLQGLVH+VRNLGIVTPQDNTIQLAV ESVSDQ SVLTA VF+GKELGVV FD+IDTLM E+R+FEAV+GG TTPTRRMAQVKGSSGGRQGQRR+GGG TGS Sbjct: 216 EYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQVKGSSGGRQGQRRDGGGRTGS 321
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.460e-30 Identity = 87/212 (41.04%), Postives = 119/212 (56.13%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSA-SPGRSNGGYG-----GRRVMTVEDMEYEDECAEFKRVHDIHAS-PRTNSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGHFVRDCDKGYI 749 SEY+ TL+ LV N ++G + QDN +QLAVR+SV DQYS + VFKG++L VP+D+I LM L T R + V+ R GQ GGG S GT ++ SA S GR YG G RVM + + E EDE EFK+VH + + ++ PF+ F S +E+D R+A+G +CLNCG + HFVR+C +I Sbjct: 600 SEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTK---RAGQ----GGGNASAGTTSYASAASAGRM---YGKQPSQGARVMNIHE-EMEDEEKEFKKVHYVATQWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFI 800
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.030e-20 Identity = 75/213 (35.21%), Postives = 111/213 (52.11%), Query Frame = 3 Query: 141 YLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFE----------AVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFRSASPGR--SNGGYGGRRVMTVEDMEYEDECAEFKRVHDIHASPRT-NSQANHCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEG--HFVRDC 734 YL L+ LV +V+ +G +D T+Q+AV+ V+DQY+ LTA VF G+ +P+D++++LM+ L + ++G G+ R A + SS GR G GGG +F A G G G R VMTV +Y+DE EF +V + + + PF+ FT+ +E+DR RR FG +CLNCG E H R+C Sbjct: 137 YLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVRLRGVGSVLPRGQADMSVSSRGRYG----GGG--------SFSGAKSGSLTPQGSAGARAVMTV--AQYDDESREFWQVSQVSRGNKGFGRNDDDPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLAREC 333
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 2.210e-17 Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 Query: 1 MEEGSTGRQALTLLISALGRVVSSSSPEKLVYDLQTFAVPTGTP 132 MEEGSTGR+ALT L SALGRVVSSSSPEKLVYDLQTFAVPTGTP Sbjct: 1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 44
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.100e-15 Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 3 Query: 135 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG 293 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQ+ +G+ +G Sbjct: 46 SEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11141.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11141.769.1 >prot_E-siliculosus-1a_F_contig11141.769.1 ID=prot_E-siliculosus-1a_F_contig11141.769.1|Name=mRNA_E-siliculosus-1a_F_contig11141.769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp MQELRNFEAVKGGGTTPTRRMAQVKGSSGGRQGQRREGGGGTGSGGTNTFback to top mRNA from alignment at E-siliculosus-1a_F_contig11141:674..1422- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11141.769.1 ID=mRNA_E-siliculosus-1a_F_contig11141.769.1|Name=mRNA_E-siliculosus-1a_F_contig11141.769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=749bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11141:674..1422- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11141:674..1422- >mRNA_E-siliculosus-1a_F_contig11141.769.1 ID=mRNA_E-siliculosus-1a_F_contig11141.769.1|Name=mRNA_E-siliculosus-1a_F_contig11141.769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11141:674..1422- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |