mRNA_E-siliculosus-1a_F_contig1109.740.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A6H5K089_9PHAE (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K089_9PHAE) HSP 1 Score: 922 bits (2382), Expect = 0.000e+0 Identity = 510/560 (91.07%), Postives = 524/560 (93.57%), Query Frame = 1 Query: 208 MKWPLAAVLVGTARSPATGFHVNPIPVRPTTTAAAAAAGVEQNSRITAHRYSRPSRHRVAAARASAAAGLGGAADGVESSLQHLTQPGEEDEDEDEGAFFSAEESLPPTTPQAPARAAPVQPAATEDDNTNAVISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXX-----NLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNILRVSGTPEQQEAFGKLQELRQSQADEAAPLGGRGAPRMAAGGRGGG------------KKRPGNRSKGARAAFEAVAKSEIFEQ 1836 MKWPLAAVLVGTARSPATGFHVNPIPVR TT AAA AGVEQ+SR+TA+R SRPSRHRVAAARASA AGLGGAADGVESSLQ LTQPGE+DEDED+GAFFSAEESLPPT+ APARAAP +PAATED NTNAV+STVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQ XXXXXXXXXXXXX +LVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLM+HMVQSGQL+EG+DT AAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAE QRPLLHSVSLEFIHPFTNKPMSFKAPMP DMWETAQNILR+SGTPEQQEAFGKLQELRQSQADEAAP+GGRGAPRMAAGGRGGG KKRPGNRSKGARAAFEAVAKSEIFEQ Sbjct: 1 MKWPLAAVLVGTARSPATGFHVNPIPVRSKTTVAAA-AGVEQSSRMTAYRVSRPSRHRVAAARASAVAGLGGAADGVESSLQRLTQPGEDDEDEDKGAFFSAEESLPPTSAPAPARAAPARPAATEDGNTNAVVSTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQXXXXXXXXXXXXXXXXXXXXXXXSLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMYHMVQSGQLKEGADTMAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEVQRPLLHSVSLEFIHPFTNKPMSFKAPMPPDMWETAQNILRMSGTPEQQEAFGKLQELRQSQADEAAPVGGRGAPRMAAGGRGGGXXXXXXXXXGGGKKRPGNRSKGARAAFEAVAKSEIFEQ 559
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A835YI41_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI41_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.910e-63 Identity = 147/377 (38.99%), Postives = 200/377 (53.05%), Query Frame = 1 Query: 619 VSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHG------------DPGFDSV----VDAPLYRRSSGKVGAVEPWE----------AEEFRAKEAQTRVRNVATAR-------------GLSLCRADILTGRMHQVRVHLKWIGCPIVGDREY---GDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNIL 1623 V ED APIDW+LSR+LP SRRF+RK L G+V++DGR KR +RV+ G I+V + P + +L VV+ED+H+ VV KP G++ QP A+ PRGT+L+G++HHMV G+ G + AA L QG+V RLD+ TSGI++VAK L ASS LSA+F+ KV K YLAV G D G D +DAPLY+R+SGK+ P + A K A TRV+ + + GL + +I TGR HQ+R HL G P++GD Y GD A ++ +A RPLLH++SL HP TN + AP+P DMW +++ Sbjct: 10 VEQEDGNAPIDWLLSRKLPHRSRRFFRKQLADGNVQIDGRVNKRLVRVRPGQTITVAAAAADA------------VAPPSEQLPAQDLKLHVVYEDEHIIVVAKPPGIVVQPMASQPRGTLLNGVLHHMVARGECAAGDEV---AAQGLLQGVVHRLDRDTSGIVIVAKNLEASSTLSAMFKSRKVSKTYLAVTAGLPNPARCALEPADSGGDGTGPYTIDAPLYKRASGKMAVATPQQLQXXXXXXXXASAIDVKPALTRVKALPRSAAXXXXXXXXXXXGGLRALQVEITTGRQHQIRAHLLHAGAPVIGDVTYCAGGDAGA----ARAAAAALGVARPLLHALSLTLHHPVTNARLVLVAPLPADMWRVLSDVV 367
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A7S3XRN0_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRN0_HETAK) HSP 1 Score: 219 bits (559), Expect = 9.140e-61 Identity = 127/343 (37.03%), Postives = 198/343 (57.73%), Query Frame = 1 Query: 607 ISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWE----AEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNIL 1623 +S V E+N AP+DW L+ PQ SRR++RK ++ G+VKV+G+ V+RF +++ G + +++ +++ NL L V+FEDD L V+KPAG++C P + GTVL+GL+HH +++ Q A + TLS+GIV RLDK TSG+M+ AK A+ KLS F + K+YL VC+G +VV+ P+YR +GK+ + + E R K++++ V+ + +GLSL +++TGRMHQ R+HLK++G PI+GD YG RV+K + R LLH+ L HP T + + AP+P+DMW ++ + Sbjct: 58 VSAEVDSENNGAPLDWYLAHSFPQKSRRYFRKKIQDGEVKVNGKTVRRFAKLRTGQVLDLEIEDFAKEI----------EGAENL-------SLSVLFEDDDLVAVLKPAGVVCYPVDSQKSGTVLNGLLHHFLETEQ-----QVFANSIETLSKGIVHRLDKDTSGVMIFAKNQKAAKKLSQSFESRETVKRYLGVCYGHVEPKTVVEEPVYRTKNGKMAVLSKKQDTSVISESRVKDSKSVVKCLMHRQGLSLVEVELITGRMHQARLHLKYLGAPILGDPIYG----LARVNKDAYQDLGVDRALLHASRLIVQHPRTGEKLDLSAPVPSDMWGVIEDCI 374
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A7S2USK5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USK5_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.910e-49 Identity = 143/412 (34.71%), Postives = 206/412 (50.00%), Query Frame = 1 Query: 586 DDNTNAVISTVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMV---------QSGQLEEGSDTTAAAANT---------------------------------LSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGD--PGFDSVVDAPLYRRSSGKVGAVEP----W------------------EAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHL-KWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNI 1620 D + + V + VV +D+ P+D VL+R+ P+ SRRF+RK ++AG VKVD ++VKR ++++G +S ++ + P+ L L V+FED+HL V KP GMI P + GTVLHG++H + ++ EG+ A +T L+QG+V RLD TSG+++VAK A+ ++ F++ VKK+Y+AV GD PG + PL R SSGK+ + W EA+ A+ A T VR +AT LS+ A+ILTGRMHQ+RVHL + CP++GD YGD + N R KRS + + R LLH+ SLEF HP T K +S P+P DM Q I Sbjct: 46 DSHQSDVQTFVVGKKDDDWPLDIVLTRQYPEKSRRFFRKIIQAGRVKVDEKEVKRLSKIRKGQLVSAQFKPDEKPS----------------MEPEDLG-LEVLFEDEHLIAVAKPPGMIVHPVESCETGTVLHGVLHLLTTPREKVTPKETAAQPEGNQENAQEEDTKVERKPEKNAKKGGPDPWDPAKPLKLTARLCTGLAQGVVHRLDSDTSGVVLVAKNAPAARGMAKQFQQRSVKKKYMAVVVGDLGPGVHHLT-LPLLRTSSGKMAVFQEAQPEWGEEMAGGDMLTGDFTDVGEADAKGARGATTIVRRLATDGQLSVVGAEILTGRMHQLRVHLAQEANCPVLGDPVYGDTDWNRRA-KRSEN-LQVSRTLLHAHSLEFTHPITGKHVSLSTPVPLDMKRIVQRI 437
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK) HSP 1 Score: 181 bits (458), Expect = 1.970e-46 Identity = 117/332 (35.24%), Postives = 171/332 (51.51%), Query Frame = 1 Query: 610 STVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYR--RSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDM 1599 + +V +E NK +D LS P+ SR ++ + G V+V GR VK+ +++ G +SV + P+ +P L +++ED+HL V KP GM+ P + GT + L HM G+ A + L GIV RLDK TSG+++ +K +KLS +F K+KK YLAVC G+PG D ++ + R ++ K+ + + RA+ A T V ++ LSL R I TGR HQ+RVHL P++GD YG+ + N R KR QRPLLH+ LE HP T +P+S KAP+P DM Sbjct: 68 TVIVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAE----------------PEDIP-LDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGE----DYRAAGGGDALRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTYLAVCVGNPGQDVKIENLIARHPKNRQKMCVIHETQEGAARARTAVTLVDGLSFDSQLSLARVQIETGRTHQIRVHLAHRRTPVLGDELYGNGDQNRRAVKRFG----LQRPLLHAYQLELDHPITGEPLSLKAPVPEDM 374
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A6M2A1C5_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A1C5_9BACT) HSP 1 Score: 169 bits (429), Expect = 1.400e-43 Identity = 114/331 (34.44%), Postives = 169/331 (51.06%), Query Frame = 1 Query: 610 STVVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRS-SGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDM 1599 S VVS ED +D L++ P HSR +++ ++ V ++G +K+ R+ G + V Q L V P+ +P L +++ED+ + VV KP+GM+ P + GT + L+HH Q + E L GIV RLDK TSGI++ AK LAA KL F ++KQYL +C G P + AP+ R + K + P KEA+T + +GLSL +A ++TGR HQ+RVHLK + CP++GD YG P N + + R +LH+ SL+ IHP + P+ F AP+P+DM Sbjct: 4 SLVVSKEDLGERVDKFLTQYFPNHSRTYFQFLIDEESVLLNGHPIKKQHRLVEGDEVEVSF----QTLPMLD------------VKPEAIP-LEILYEDESIIVVNKPSGMVVHPAPGSYSGTFANALLHHCKQLKKEE---------FENLRPGIVHRLDKDTSGILIAAKNLAAHQKLVEQFASRSIEKQYLVICLGVPK-EGECSAPIKRHPINRKQMTINP------EGKEARTHFTVLGRRKGLSLVQAKLITGRTHQIRVHLKSMNCPVLGDTTYGSPSLNQKYN--------TTRQMLHARSLKMIHPISEIPLEFIAPIPSDM 293
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A836CH15_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.600e-42 Identity = 119/332 (35.84%), Postives = 170/332 (51.20%), Query Frame = 1 Query: 646 IDWVLSRRLPQHSRRFYRKALEAGDVKVDGRK-VKRFIRVKRGARISVD-LGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEE-FRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNILRVS 1632 ID L ++P SR ++ G V V+G VK+ +V G ISV L + LG P+ +P L V+FED L + KP GM+ P GT ++ L+HH+ + +GS + + L G+V RLDK TSG+++ AKT +LS LF KV+K YLAVC G+PG D +D P+ R ++ + V + + RA+ A + VR A LS+ I TGR HQ+RVHL+ PIVGD YG+ + N R+ KR RPLLH++ LEF HP T + +AP+P DM + + V+ Sbjct: 67 IDAFLCSKVPDQSRTYFGDLCTKGCVCVNGSSAVKKSHKVTAGQIISVRFLATAELNLG-----------------PEDIP-LDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSK-----DGSVVSLGESGDLRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKVRKTYLAVCAGNPG-DDAIDVPIGRHATNRQKMVAVPDIQPGARARRALSHVRCTAFDGSLSVAEVRIETGRTHQIRVHLQHRRTPIVGDELYGNRDWNRRLQKRGI-----SRPLLHALRLEFTHPTTGAALRLEAPLPEDMASIVRGVYPVA 369
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A6M1ZVU5_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZVU5_9BACT) HSP 1 Score: 164 bits (416), Expect = 8.340e-42 Identity = 114/337 (33.83%), Postives = 178/337 (52.82%), Query Frame = 1 Query: 616 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWETAQNILR 1626 +V++E+ K +D +L+ R P+ SR ++++ ++ V V+G++VK+ I ++ I + + + P+ +P L +++ED+ L V+ KPAG++ P A GT+++GL+ H Q AA +L GIV RLDK TSG++V AK A KLS LF +V K+YLA+C +PG + ++D P+ R V E +E R +EAQT ++ LSL R TGR HQ+RVHLK I PI+GD YG+ N + LLH+ L F+HP + + + FKAP+P DM + +I+R Sbjct: 7 IVTEEEEKLRLDTLLATRFPELSRTYFQQLIDRQLVLVNGKQVKKRIHLRSADEIEIQFVLSPEIS----------------LEPEEIP-LDILYEDEELLVINKPAGLVVHPGAGHSSGTLVNGLLFHCKQ-----------LKAAESLRPGIVHRLDKGTSGLLVAAKNEEAQMKLSTLFANRQVHKEYLAICISNPG-NRLIDQPIGRHP---VRRKEMTILKE-RGREAQTETHSLVHNGELSLVRLIPKTGRTHQLRVHLKSIRAPILGDPVYGNHYLNKKYG--------LTHQLLHAEILRFVHPISGEKVEFKAPIPEDMQKIIDSIIR 302
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A1F8JRD2_9BACT (Pseudouridine synthase n=2 Tax=Chlamydiae TaxID=204428 RepID=A0A1F8JRD2_9BACT) HSP 1 Score: 163 bits (413), Expect = 2.320e-41 Identity = 113/329 (34.35%), Postives = 169/329 (51.37%), Query Frame = 1 Query: 616 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRS-SGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDM 1599 +++ ED +D +L+ +SR +++ +EAG V ++G VK+ + + G +S+ L +F L ++FED+HL + KPAGM+ P P T ++ L+HH +E DT A L GIV RLDK+TSG+++ AK+ AA ++ +LF + KVKK Y+A+C G+P D + APL R K AV P KEA T +R +++ S LTGR HQ+RVH++ IG PI+GD YG N ++ + R LLH+ SL FIHPF +P+ AP+P M Sbjct: 8 LITQEDAGRRLDLLLASHYSSYSRSYFQYLMEAGAVLLNGSPVKKRTKPRLGDEVSLSL-----------IPLPEMRLEPEAIF------LDILFEDEHLIAINKPAGMVVHPAPGHPSHTFVNALLHHC------KELPDTLGAP---LRPGIVHRLDKETSGVLLAAKSQAAHREIVSLFSERKVKKTYVAICLGNPK-DQTIRAPLLRHPVRRKEIAVAP------SGKEAVTSIRVLSSQGNYSFVEIAPLTGRTHQIRVHMRHIGAPILGDPVYGPAFLNKKL--------QLSRQLLHARSLFFIHPFEKRPLEISAPLPAAM 295
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Match: A0A6M2A8C7_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A8C7_9BACT) HSP 1 Score: 163 bits (412), Expect = 2.940e-41 Identity = 110/330 (33.33%), Postives = 168/330 (50.91%), Query Frame = 1 Query: 616 VVSDEDNKAPIDWVLSRRLPQHSRRFYRKALEAGDVKVDGRKVKRFIRVKRGARISVDLGRQQQQLGXXXXXXXXXXXXXNLVFPQRLPRLRVVFEDDHLFVVMKPAGMICQPCAAAPRGTVLHGLMHHMVQSGQLEEGSDTTAAAANTLSQGIVQRLDKQTSGIMVVAKTLAASSKLSALFRKGKVKKQYLAVCHGDPGFDSVVDAPLYRRSSGKVGAVEPWEAEEFRAKEAQTRVRNVATARGLSLCRADILTGRMHQVRVHLKWIGCPIVGDREYGDPEANFRVSKRSAHRAEAQRPLLHSVSLEFIHPFTNKPMSFKAPMPTDMWE 1605 VV E +D LS R P +SR++++ +E V V+G+ K+ ++ G I ++ ++ + P+ +P L +++ED+ + V KPAGM+ P A GT +H L+++ T + TL GIV RLDK+TSG+++ AKT A L F KVKK+YLA+C G+PG + +++ + R + + + E KEA T ++ T LS R TGR HQ+RVHL+ +G PI+GD YG P N + ++R LLH+ SL+F HP T K + KAP+P DM E Sbjct: 9 VVEKEGEGVRLDKFLSTRFPDYSRQYFQYLIETHLVLVNGQIAKKRTKLIEGDEIEIEFALTKEIS----------------LTPEPIP-LTILYEDEEMLAVNKPAGMVVHPAAGNWTGTFVHALLYYC-----------QTLPSQETLRPGIVHRLDKETSGVLLAAKTERAQQGLVEAFANQKVKKEYLAICVGNPG-NRLIEGNIGRHPTKR----KQMSLREEGGKEASTECLSLGTYENLSFVRLFPKTGRTHQLRVHLQSVGTPILGDSVYGIPSQNKKWG--------SERQLLHAASLQFPHPITEKSIEVKAPIPDDMRE 297 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1109.740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1109.740.1 >prot_E-siliculosus-1a_F_contig1109.740.1 ID=prot_E-siliculosus-1a_F_contig1109.740.1|Name=mRNA_E-siliculosus-1a_F_contig1109.740.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=544bp MKWPLAAVLVGTARSPATGFHVNPIPVRPTTTAAAAAAGVEQNSRITAHRback to top mRNA from alignment at E-siliculosus-1a_F_contig1109:24724..28717+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1109.740.1 ID=mRNA_E-siliculosus-1a_F_contig1109.740.1|Name=mRNA_E-siliculosus-1a_F_contig1109.740.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3994bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:24724..28717+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1109:24724..28717+ >mRNA_E-siliculosus-1a_F_contig1109.740.1 ID=mRNA_E-siliculosus-1a_F_contig1109.740.1|Name=mRNA_E-siliculosus-1a_F_contig1109.740.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:24724..28717+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |