mRNA_E-siliculosus-1a_F_contig11084.735.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A6H5JUH8_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 9.950e-59 Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 1 Query: 1 RAGARKSGREGEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK 297 RAGARKSGREGEARIVKP+ERFDHMPHTQHYPVEDVLVDLLEVAAQ L +GGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK Sbjct: 306 RAGARKSGREGEARIVKPDERFDHMPHTQHYPVEDVLVDLLEVAAQTLALGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK 404
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.980e-58 Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1 Query: 1 RAGARKSGREGEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK 297 RAGARKSGREGEAR VKPEERFDHMPHTQHYPVEDVLVDLLEVAAQ LV+GGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK Sbjct: 306 RAGARKSGREGEARTVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQTLVLGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTK 404
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A836CPF8_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPF8_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.390e-28 Identity = 60/103 (58.25%), Postives = 75/103 (72.82%), Query Frame = 1 Query: 1 RAGARKSG-REGEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGAR++G R V+PE+R DH+P T+ Y VEDVLVDLL+VAA+AL G RLCYL+ T+E + LP HPCL L HS+QGLT+ CRRL+TM KV+E Sbjct: 307 RAGARRTGSRRANVTPVRPEQRADHVPMTRPYAVEDVLVDLLDVAARALRRGRRLCYLMPGTYETCTRASLPGHPCLRLVAHSVQGLTKTTCRRLVTMVKVAE 409
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A7S2S7P8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7P8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.010e-21 Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1 Query: 1 RAGARKSG---REGEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAG RKSG + + R V + R DH+P T+ YPVE+VL+DLL++AA L++GGRL YLL +T +F LQ LP HPCL + S Q LT + R LIT+ K++E Sbjct: 80 RAGGRKSGSRRKPEDVRAVPEDRRLDHIPQTRPYPVEEVLLDLLDLAAMTLILGGRLVYLLPTTHDF-LQSHLPAHPCLRVVACSEQPLTLKISRWLITVEKIAE 183
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A448ZQV7_9STRA (UPF0020 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQV7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.520e-21 Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 1 RAGARKSGREGE-ARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGAR++G E R + E R DH+ T+ Y V DV+ DLL+VAA+ LVVGGRL Y++ S +FD +RDLPRH CLEL H Q + L RR++ M KVS+ Sbjct: 468 RAGARQTGSRLENPRPILEENRHDHIAQTKPYVVSDVMSDLLDVAARTLVVGGRLVYVIPSFRDFDEERDLPRHDCLELVHTCYQPFSTELGRRIVAMEKVSD 570
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A7S0UL30_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UL30_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.930e-21 Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 1 RAGARKSGRE-GEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGAR++G + + R V E R DH+ T+ Y V DV+ DLL+VAA L VGGRL Y++ S FD +RDLPRH CLEL H Q + L RR++ M K+++ Sbjct: 64 RAGARQTGSKLNKPRPVLEENRHDHIAQTKAYAVSDVMSDLLDVAASTLKVGGRLVYIIPSFQNFDEERDLPRHECLELIHTCYQPFSLELGRRIVAMKKIAD 166
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A6V0BUF4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BUF4_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.240e-20 Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 1 RAGARKSGRE-GEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGARK+G + + R + E R H+P T+ Y V DV+ DLL+VAA+ LV+GGRL Y++ S +FD RDLPRH CLEL H Q + L RR++ M K+++ Sbjct: 543 RAGARKTGSKLDQPRQILEENRHTHIPQTKPYVVSDVMSDLLDVAARTLVLGGRLVYVIPSFRDFDDDRDLPRHDCLELIHVCYQPFSNELGRRIVAMKKITD 645
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A7S0UFW3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFW3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.280e-20 Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 1 RAGARKSGRE-GEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGAR++G + + R V E R DH+ T+ Y V DV+ DLL+VAA L VGGRL Y++ S FD +RDLPRH CLEL H Q + L RR++ M K+++ Sbjct: 136 RAGARQTGSKLNKPRPVLEENRHDHIAQTKAYAVSDVMSDLLDVAASTLKVGGRLVYIIPSFQNFDEERDLPRHECLELIHTCYQPFSLELGRRIVAMKKIAD 238
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A8K1FHH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHH4_PYTOL) HSP 1 Score: 91.7 bits (226), Expect = 2.300e-19 Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 1 RAGARKSGREGEARIVKPEE-----RFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSEG 309 RAGARKSGR + + E+ + ++P TQ Y EDV+ DLLE +AQ L VGGRL YLL +T+E+ DLPRHP LE+ +S Q LT+ RRLITM K SE Sbjct: 341 RAGARKSGRRPGSNTMSTEQLAKKAKQTYVPPTQPYAAEDVMKDLLEFSAQTLRVGGRLVYLLPTTYEYT-DADLPRHPQLEIIANSEQKLTKKYARRLITMIKRSEA 447
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Match: A0A2D4BRW7_PYTIN (tRNA guanosine-2'-O-methyltransferase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRW7_PYTIN) HSP 1 Score: 91.3 bits (225), Expect = 3.380e-19 Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 1 Query: 1 RAGARKSGREGEARIVKPEE-----RFDHMPHTQHYPVEDVLVDLLEVAAQALVVGGRLCYLLASTWEFDLQRDLPRHPCLELSHHSMQGLTQLLCRRLITMTKVSE 306 RAGARKSGR+ ++ V E + ++P TQ Y EDV+ DLLE AA+ L VGGRL YLL +T+E+ DLPRHP LE+ +S Q LT+ RRLITM K E Sbjct: 367 RAGARKSGRKDKSTNVSTESLAKRMKQTYVPPTQPYAAEDVMKDLLEFAARTLRVGGRLVYLLPTTYEYT-DADLPRHPQLEVVANSEQKLTKKYARRLITMIKTKE 472 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11084.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11084.735.1 >prot_E-siliculosus-1a_F_contig11084.735.1 ID=prot_E-siliculosus-1a_F_contig11084.735.1|Name=mRNA_E-siliculosus-1a_F_contig11084.735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp RAGARKSGREGEARIVKPEERFDHMPHTQHYPVEDVLVDLLEVAAQALVVback to top mRNA from alignment at E-siliculosus-1a_F_contig11084:491..1530- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11084.735.1 ID=mRNA_E-siliculosus-1a_F_contig11084.735.1|Name=mRNA_E-siliculosus-1a_F_contig11084.735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1040bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11084:491..1530- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11084:491..1530- >mRNA_E-siliculosus-1a_F_contig11084.735.1 ID=mRNA_E-siliculosus-1a_F_contig11084.735.1|Name=mRNA_E-siliculosus-1a_F_contig11084.735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11084:491..1530- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |