mRNA_E-siliculosus-1a_F_contig11078.729.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.340e-49 Identity = 104/171 (60.82%), Postives = 105/171 (61.40%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEE-----------------------EATASGS----------------------------------------SSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKREVE 324 DAAIHNHLLALYAQEE E + SGS SSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKR VE Sbjct: 959 DAAIHNHLLALYAQEEQWREGHRHPSSPPSTRGYKALSGEGSVSGSGLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKRGVE 1129
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A7S4D8S2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8S2_HETAK) HSP 1 Score: 108 bits (271), Expect = 4.830e-27 Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 7 AIHNHLLALYAQEEEATASGSSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKREVE 324 A+HN+LL LYAQ LL FI+ P + FD YALRLC++ + ACVH+Y M LWEEAV+LAL+ DT++AK NANKAPD E RK LWL+IAK ++ Sbjct: 10 ALHNYLLMLYAQSS--LPGSEEKLLKFISNP--QAAFDLKYALRLCTKESQHRACVHIYGMMTLWEEAVELALSFDTELAKENANKAPDRELRKRLWLQIAKHVID 111
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.010e-24 Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 67 SSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKREV 321 S+ LL +ARPPE+RFFD YALR+C+Q GR A V +Y+AMGL+EEAVDLAL VD +AKA+AN+ DP+TRK LWLKI + V Sbjct: 848 STPLLDLLARPPEKRFFDLTYALRVCAQLGRRRARVAIYAAMGLYEEAVDLALAVDAQLAKAHANRPKDPDTRKRLWLKIVRHAV 932
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A3M6T9G8_POCDA (Vacuolar protein sorting-associated protein 18 homolog n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T9G8_POCDA) HSP 1 Score: 106 bits (265), Expect = 1.370e-24 Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFI---ARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPET--RKLLWLKIAKREVE 324 D AIHN+LL+LY ++E+ SLL ++ + PEE +D YALRLCS+H + ACVH+YS MGL+EEAVDL+L VD D+AK A K P+ + RK LWL+IA+ VE Sbjct: 655 DQAIHNYLLSLYIEQED-----DESLLRYLQMQGQDPEEVCYDMKYALRLCSEHDKQKACVHIYSTMGLFEEAVDLSLKVDVDLAKIQAQKPPEDDEVLRKKLWLRIARHVVE 762
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: UPI0009E26102 (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E26102) HSP 1 Score: 105 bits (261), Expect = 4.660e-24 Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFI---ARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPET--RKLLWLKIAKREVE 324 D AIHN+LL+LY ++++ SLL ++ + PEE +D YALRLCS+H + ACVH+YS MGL+EEAVDL+L VD D+AK A K P+ + RK LWL+IA+ VE Sbjct: 439 DQAIHNYLLSLYIEQDD-----DLSLLRYLQMQGQDPEEVCYDMKYALRLCSEHNKQQACVHIYSTMGLFEEAVDLSLKVDVDLAKIQAQKPPEDDEVLRKKLWLRIARHVVE 546
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: L8GL02_ACACA (Pep3/Vps18/deep orange family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GL02_ACACA) HSP 1 Score: 104 bits (259), Expect = 8.840e-24 Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPETRKLLWLKIAKREVE 324 D AIHN+LL+LYAQ+ +LL F+ R EE FD YALRL +H + ACV +YSAMGL EEAVDLA+ +D ++AKA+AN+ D E RK LWL+IA+ VE Sbjct: 633 DPAIHNYLLSLYAQQ-----GSEEALLGFLQR--EEAVFDLRYALRLALRHEKRRACVDIYSAMGLHEEAVDLAIRLDVNLAKAHANRPQDDEVRKKLWLRIARHVVE 733
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: UPI001CF40265 (vacuolar protein sorting-associated protein 18 homolog isoform X1 n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF40265) HSP 1 Score: 102 bits (255), Expect = 3.070e-23 Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFI---ARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPET--RKLLWLKIAKREVE 324 D AIHN+LL+LY + ++ SLL ++ + PEE +D YALRLCS+H + ACVH+YS MGL+EEAVDL+L VD ++AK A K P+ + RK LWL+IA+ VE Sbjct: 667 DQAIHNYLLSLYIERDD-----DRSLLRYLQMQGQDPEEVCYDLKYALRLCSEHNKQRACVHIYSTMGLFEEAVDLSLKVDVELAKIQAQKPPEDDEVLRKKLWLRIARHVVE 774
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A397UPW1_9GLOM (Pep3/Vps18/deep orange family-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UPW1_9GLOM) HSP 1 Score: 102 bits (253), Expect = 5.730e-23 Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTV-DTDMAKANANKAPDPET-RKLLWLKIAKREV 321 D AIHN LL LYA + + + +SLL F+AR +E ++ YALR+CSQ+G++ +CVH+YS MGL+EEAVDLAL D D+AK NA+K D E RK LWLKIA+ ++ Sbjct: 689 DPAIHNFLLTLYATQPSSN-NDETSLLKFLAREGKEPHYNMDYALRICSQNGKTQSCVHIYSNMGLFEEAVDLALKHNDLDLAKINADKPDDDEPLRKKLWLKIARLKI 796
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: A0A2R2MJ62_LINUN (Vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MJ62_LINUN) HSP 1 Score: 100 bits (250), Expect = 1.450e-22 Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFI---ARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDP-ETRKLLWLKIAKREVE 324 D AIHN+LL+LYA+ + L+A++ EE +D YALRLC++H + ACVH+YS MGL+EEAVDLAL VD D+AK NA+K D E +K LWL+IA+ VE Sbjct: 671 DEAIHNYLLSLYAKLQP------DKLMAYLKLEGEDQEEVSYDVKYALRLCAEHDQKRACVHIYSTMGLYEEAVDLALQVDVDLAKHNADKPEDDLELKKKLWLRIARHVVE 776
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Match: UPI0003F0BFFE (vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0BFFE) HSP 1 Score: 100 bits (248), Expect = 2.700e-22 Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 1 Query: 1 DAAIHNHLLALYAQEEEATASGSSSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLALTVDTDMAKANANKAPDPET-RKLLWLKIAKREVE 324 D AIHN+LL+LYA+ ++ L F P+ +D YALRLCS+H ACVH+Y+ MGL+EEAVDLAL VD D+AK NA++ D E RK LWL+IA+ VE Sbjct: 658 DEAIHNYLLSLYAKYQK---DQLMKYLMFQGNNPDMVHYDLKYALRLCSEHTIERACVHIYTTMGLYEEAVDLALKVDVDLAKLNADRPEDDEELRKKLWLRIARHVVE 763 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11078.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11078.729.1 >prot_E-siliculosus-1a_F_contig11078.729.1 ID=prot_E-siliculosus-1a_F_contig11078.729.1|Name=mRNA_E-siliculosus-1a_F_contig11078.729.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp DAAIHNHLLALYAQEEEATASGSSSLLAFIARPPEERFFDPMYALRLCSQback to top mRNA from alignment at E-siliculosus-1a_F_contig11078:184..1577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11078.729.1 ID=mRNA_E-siliculosus-1a_F_contig11078.729.1|Name=mRNA_E-siliculosus-1a_F_contig11078.729.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1394bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11078:184..1577- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11078:184..1577- >mRNA_E-siliculosus-1a_F_contig11078.729.1 ID=mRNA_E-siliculosus-1a_F_contig11078.729.1|Name=mRNA_E-siliculosus-1a_F_contig11078.729.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11078:184..1577- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |