mRNA_E-siliculosus-1a_F_contig1107.727.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.180e-49 Identity = 235/546 (43.04%), Postives = 257/546 (47.07%), Query Frame = 2 Query: 383 MLVFYRNESDKCASSFPALHDTSTTHRHQLHRKRGGMGAGAPEDLSSTAAGPTGVSLGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPDLQYSS-PAVLTGGVLRPTPQLVILDRFATPPSTQAMNTLTERPQTSNSLSWVEAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDGGM-----------GLMANSTG-----DESLTTEDPHVRASLKRAIFELYDTCHRHLSFKTKAKCLQMLNYDAFVRMMELELNLRLAGVAGMCSWCFSRERDRDRDCLGRPPR*PGVAAAVVL----------GIIREGRPGALWKEKAMKVWLLEQPLFSARGLNGTLGGAELRCASLFRNDDVGVARTALTFKTPSSL--------SRETGA---------WTSVTASVLPR*SWRGRC-----GTGSRTTLWITTCGTTRPSRSTVD*ATSSSSCTCGGSTTGFWGVSVF-------DYEKSLALGPEGPPVDPCEQL 1852 M FYRNESD+CA+ ALHD S + RHQLHRK GGMG G ED SS XXXXXXXXXXXXXXXXXXXXXXXXL DDPDLQYSS P V TGGVLRPTPQ + F S XXXXXXXXXXXXXX XXXXXXX XXXX DVDGG G ++NS G DES TTEDP+VRASLKRAI ELYDTCHR LSFK MLNYDAFVR+MEL R + G PPR P A + + G + GAL KEKAMKVWLLEQPLFSAR LN TL GAEL ASLF N DV VARTALTFK SSL GA W + L + W G G+ L WGV+++ DYE+ L+L P+GP VDPCEQ+ Sbjct: 1 MWAFYRNESDQCAAKLSALHDASASLRHQLHRKLGGMG-GVREDFSSAXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXLLDDPDLQYSSSPVVSTGGVLRPTPQ----EHFLVAGS-------------GAGXXXXXXXXXXXXXXXXXXXXXXXGATRIRGRRSSSNGMGGTAPXXXXXXXGEDENGWGSXXXXMSSSAPSGPSVGSGVGGDVDGGAAKANAGFGGGNGFLSNSGGAGAGDDESATTEDPYVRASLKRAIVELYDTCHRLLSFK-------MLNYDAFVRLMELHC--------------------RRPEVAGAPPRPPWSAGKMTVVGDHQGAKAGGAVGGEGEGALSKEKAMKVWLLEQPLFSARDLNSTLAGAELLYASLFCNGDVDVARTALTFKASSSLRGNRRFDFGYRLGAATVLLAWAMWDCIADDSLGKDVWHDPAFKIYRGLGNLVLLVY------------------------------MWGVNIWVWRRFGIDYERCLSLDPKGPRVDPCEQV 464
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.170e-40 Identity = 145/408 (35.54%), Postives = 167/408 (40.93%), Query Frame = 2 Query: 305 IVYLGDVSIVAMKMSDISRATEEQERMLVFYRNESDKCASSFPALHDTSTTHRHQLHRKRGGMGAGAPEDLSSTAAGPTGVSLGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPDLQYSSPAVLTGGVLRPTPQLVILDRFATPPSTQAMNTLTERPQTSNSLSWVEAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDGGMGLMANSTGDESLTTEDPHVRASLKRAIFELYDTCHRHLSFKTKAKCLQMLNYDAFVRMMELELNLRLAGVAGMCSWCFSRE-------RDRDRDCLGRPPR*PGVAAAVVLGIIREGRPGALWKEKAMKVWLLEQPLFSAR----------GLNG 1477 + YLGDVSIVAM MSD SRATEEQ+RM FYRNES KCAS +G+P G TG G LP + + PAV+ + T ++ A+ L LSW+ + DVDGGMGLM ++GDESLTTEDP+V ASLKRAI ELYDTCHR LSF +MLNYDAFVRMMELEL+LR G AG+ E R DR +G A AVVL + EGRPGAL KEKAMKVWLLE+PLFSAR GLNG Sbjct: 8 VYYLGDVSIVAMMMSD-SRATEEQDRMWAFYRNESGKCASKL----------------------SGSPRHFDG---GSTGSWTGR----------------------GAHLKTFLPP----RRTEPAVVIRAAVAATRTAAVV---------VALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLSGEQEWGGGLQLGSVLLDTPGPSLQQRSGGGDG----------------------DVDGGMGLMGKTSGDESLTTEDPYVLASLKRAIVELYDTCHRLLSF-------EMLNYDAFVRMMELELHLRCVGAAGIVGAPPETETETAMVGRQDDRGSVG-----VAAATAVVLETVTEGRPGALSKEKAMKVWLLEEPLFSARXXXXXXXXXXGLNG 320
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI) HSP 1 Score: 149 bits (377), Expect = 5.320e-37 Identity = 146/274 (53.28%), Postives = 156/274 (56.93%), Query Frame = 2 Query: 425 SFPALHDTSTTHRHQLHRKRGGMGAGAPEDLSSTAAGPTGVSLGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPDLQYSSPAVLTGGVLRPTPQ--LVILDRFATPPSTQAMNTLTERPQTSNSLSWVEAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDGGMGLMANSTGDESLTTEDPHVRASLKRAIFELYDTCHRHLSFKTKAKCLQMLNYDAFVRMM 1240 S PALHD STT RHQLHRKRGGMG GAPEDLSSTAAG TGVSLG QGXXXXXXXXXXXXXXXXXXXXXXXXXX LPDDP LQY SPAV T GVLRPTPQ V+ R S+ + T R + S S A + XXXXX VDGGMGLM NS+GDE LTTED +V ASLKR+I EL DTCHR LSFK MLN+DAFVR+M Sbjct: 32 SSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXX-LPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGGGNSSSSSGAT---RIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXXX----------------------------------VDGGMGLMGNSSGDEKLTTEDQYVMASLKRSIVELSDTCHRLLSFK-------MLNHDAFVRVM 260
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI) HSP 1 Score: 159 bits (403), Expect = 5.470e-37 Identity = 121/290 (41.72%), Postives = 135/290 (46.55%), Query Frame = 2 Query: 1100 TTEDPHVRASLKRAIFELYDTCHRHLSFKTKAKCLQMLNYDAFVRMMELELNLRLAGVAGMCSWCFSRERDRDRDCLGRPPR*PGVAA----------AVVLGIIREGRPGALWKEKAMKVWLLEQPLFSARGLNGTLGGAELRCASLFRNDDVGVARTALTFKTPSSL--------SRETGA---------WTSVTASVLPR*SWRGRC-----GTGSRTTLWITTCGTTRPSRSTVD*ATSSSSCTCGGSTTGFWGVSVF-------DYEKSLALGPEGPPVDPCEQL 1852 TTEDP+VRASLKRAI ELYDTCHR LSFK MLNYDAFVR+MEL R + G PPR P A A G + GAL KEKAMKVWLLEQPLFSAR LNGTL GAEL ASLF N DV VARTALTFK SSL GA W + L + W G G+ L WGV+++ DYE+ L+L P+GP VDPCEQ+ Sbjct: 327 TTEDPYVRASLKRAIVELYDTCHRLLSFK-------MLNYDAFVRLMELHC--------------------RRPEVAGAPPRPPWSAGKMTGVGDHQGAKAGGAVGGEGVGALSKEKAMKVWLLEQPLFSARDLNGTLAGAELLYASLFCNGDVDVARTALTFKASSSLRGNRRFDFGYRLGAATVLLAWAMWDCIADDSLGKDVWHDPAFKIYRGLGNLVLLVY------------------------------MWGVNIWVWRRFGIDYERCLSLDPKGPRVDPCEQV 559
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A6H5K8A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A4_9PHAE) HSP 1 Score: 115 bits (288), Expect = 2.390e-26 Identity = 66/142 (46.48%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 1645 MWDWIADYSLDHDVWHDPAFKKHRGLGNFVLLVYMWGVNNWVLGRFCIRLREESCSGSRGSAG*PLRAACMCGSRLR------DSDRDTRGGLMETRALVLPFHRRDVDGLMLFAQ-AWNTACNLSNAFLLSFICFYKCLRG 2049 MWDWIAD SL HDVWHDPA KKH GLGN VLLVYMWGVN W GR R G R D++ + R + LP L A+ WNT CNLS AFL+SFI FYKCLRG Sbjct: 1 MWDWIADDSLGHDVWHDPASKKHSGLGNLVLLVYMWGVNIWARGREIYMERNFETHGERXXXXXXXXXXXXXXXXXXXXXXXXDNETEVRRRVSVEYTGNLPLDPEGPRVCSLRAERVWNTGCNLSIAFLVSFIYFYKCLRG 142
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A7S2C320_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C320_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.180e-18 Identity = 63/159 (39.62%), Postives = 74/159 (46.54%), Query Frame = 1 Query: 1588 RRLDFGNRLGAATVILARAMWDWIADYSLDHDVWHDPAFKKHRGLGNFVLLVYMWGVNNWVLGRFCIRLREESCSGSRGSAG*PLRAACMCGSRLRDSDRDTRGGLMETRALVLPFHRRDVDGLMLFAQAWNTACNLSNAFLLSFICFYKCLRGARLAG 2064 RR +FG RLGAA V++A MWD I D + DVWHDPAFK +RGLGN VLLV+ WGVN WV G+ R L L + D + WN A +LS AFLLS ICF+K LRG G Sbjct: 249 RRFEFGIRLGAAMVLMAWVMWDLIVDPDMGKDVWHDPAFKVYRGLGNLVLLVWCWGVNLWVWRHV---------------------------------------GIDYERFLELDPTQIGEDPCI---PVWNEAIDLSIAFLLSLICFWKSLRGVFFQG 365
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A7S2XUU5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUU5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.030e-14 Identity = 56/154 (36.36%), Postives = 71/154 (46.10%), Query Frame = 1 Query: 1588 RRLDFGNRLGAATVILARAMWDWIADYSLDHDVWHDPAFKKHRGLGNFVLLVYMWGVNNWVLGRFCIRLREESCSGSRGSAG*PLRAACMCGSRLRDSDRDTRGGLMETRALVLPFHRRDVDGLMLFAQAWNTACNLSNAFLLSFICFYKCLRG 2049 RR D G R+G V+L A+WD + D +L DVWHDPAFK RGLGN VLL + WGVN WV + G+ TR L + R D L + + A NLS A+L+ F+C+YK LRG Sbjct: 127 RRWDQGVRVGVTGVLLLWAVWDCVVDPALGADVWHDPAFKVFRGLGNLVLLTWTWGVNLWVW---------------------------------------SMAGIDYTRILEID-PRSSPDSLCF--EVFREALNLSTAWLVCFLCYYKALRG 238
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A7S2SPW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.210e-14 Identity = 56/156 (35.90%), Postives = 70/156 (44.87%), Query Frame = 1 Query: 1597 DFGNRLGAATVILARAMWDWIADYSLDHDVWHDPAFKKHRGLGNFVLLVYMWGVNNWVLGRFCIRLREESCSGSRGSAG*PLRAACMCGSRLRDSDRDTRGGLMETRALVLPFHRRDVDGLMLFAQAWNTACNLSNAFLLSFICFYKCLRGARLAG 2064 DFG R+G V+LA +WD + D + +VW+DPAFK +RGLGN VLLV+ WG+N +V R G+ R L L VD W C+LS AFLLS ICF+K LRG L G Sbjct: 221 DFGLRIGVFLVLLAWVLWDCLVDDDMGKEVWNDPAFKVYRGLGNLVLLVWCWGINLFVW---------------------------------------RRAGIDYERFLRLEPCPPGVDPCQ---SVWKEGCDLSIAFLLSLICFWKALRGVFLRG 334
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Match: A0A6H5J9V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V0_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.830e-10 Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 2 Query: 1061 MGLMANSTGDESLTTEDPHVRASLKRAIFELYDTCHRHLSFK 1186 MG+MAN++GD+SLTTEDP+VRA+LKRAI ELYDT HR LS K Sbjct: 1 MGVMANTSGDKSLTTEDPYVRAALKRAIVELYDTYHRLLSCK 42 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1107.727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1107.727.1 >prot_E-siliculosus-1a_F_contig1107.727.1 ID=prot_E-siliculosus-1a_F_contig1107.727.1|Name=mRNA_E-siliculosus-1a_F_contig1107.727.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=212bp MVARIVYLGDVSIVAMKMSDISRATEEQERMLVFYRNESDKCASSFPALHback to top mRNA from alignment at E-siliculosus-1a_F_contig1107:25300..33237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1107.727.1 ID=mRNA_E-siliculosus-1a_F_contig1107.727.1|Name=mRNA_E-siliculosus-1a_F_contig1107.727.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1107:25300..33237+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1107:25300..33237+ >mRNA_E-siliculosus-1a_F_contig1107.727.1 ID=mRNA_E-siliculosus-1a_F_contig1107.727.1|Name=mRNA_E-siliculosus-1a_F_contig1107.727.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1272bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1107:25300..33237+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |