mRNA_E-siliculosus-1a_F_contig1106.721.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Match: A0A6H5L4R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R6_9PHAE) HSP 1 Score: 606 bits (1562), Expect = 4.110e-214 Identity = 294/307 (95.77%), Postives = 301/307 (98.05%), Query Frame = 3 Query: 39 MRAVLSLLCMAVAVVGKKQEEALNKDTTPFWLRDQLDGMCLGPDGFGACDAGSLWVLALKHPKKLTQAFVSMLAPEPESMCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQLCTKGTALEVVETPIHVAGMQIATADDYCFDGARFRSCNDGDPTLRWGIGMDFRSTEPSRNLFYFFDREKCAVREGETARKGDCKNKGAARWGWRDGKLTQGGKHCLGRGRDNKAIMVPCSEGHEHVSFVTPEIVPVGMQQSMFGEQEKASTRRGATPRRFE 959
MRAVL+LLCMAVAVVGKKQEEALNKDTTPFWLRDQLDGMCLGPDGFGACDA +LW+LALKHPKKLTQAFVSMLAPEPE MCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQL + GTALEVVETPIHVAGMQIAT DDYCFDGARFR+CNDGDPTLRWGIGMDFRSTEPSRNLFYFFDREKCAVREG+TARKGDCKNKGAARWGWRDGKLTQGGKHCLGRG DNKAIMVPCSEGHEHV+FVTPEIVPVGMQQSMFGEQEKASTRRGATPRRFE
Sbjct: 1 MRAVLTLLCMAVAVVGKKQEEALNKDTTPFWLRDQLDGMCLGPDGFGACDASNLWILALKHPKKLTQAFVSMLAPEPERMCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQL-SSGTALEVVETPIHVAGMQIATVDDYCFDGARFRTCNDGDPTLRWGIGMDFRSTEPSRNLFYFFDREKCAVREGQTARKGDCKNKGAARWGWRDGKLTQGGKHCLGRGSDNKAIMVPCSEGHEHVNFVTPEIVPVGMQQSMFGEQEKASTRRGATPRRFE 306
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Match: D8LIW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW7_ECTSI) HSP 1 Score: 299 bits (766), Expect = 2.930e-96 Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 3 Query: 531 MQIATADDYCFDGARFRSCNDGDPTLRWGIGMDFRSTEPSRNLFYFFDREKCAVREGETARKGDCKNKGAARWGWRDGKLTQGGKHCLGRGRDNKAIMVPCSEGHEHVSFVTPEIVPVGMQQSMFGEQEKASTRRGATPRRFE 959
MQIATADDYCFDGARFR+CNDGDPTLRWGIG+DFRSTEPSRNLFYFFDREKCAVREGETARKGDCKNKGAARWGWRDGKLTQGGKHCLGRGRDNKAIMVPCSEGHEHV+F+TPEIVPVG QQSMFGEQEKASTRRGATPRRFE
Sbjct: 1 MQIATADDYCFDGARFRTCNDGDPTLRWGIGIDFRSTEPSRNLFYFFDREKCAVREGETARKGDCKNKGAARWGWRDGKLTQGGKHCLGRGRDNKAIMVPCSEGHEHVNFITPEIVPVGTQQSMFGEQEKASTRRGATPRRFE 143
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Match: D8LIW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW8_ECTSI) HSP 1 Score: 130 bits (327), Expect = 6.650e-33 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3 Query: 276 MCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQ 473
MCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQ
Sbjct: 1 MCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQ 66
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Match: A0A7S2P4G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4G1_9STRA) HSP 1 Score: 127 bits (320), Expect = 4.220e-29 Identity = 105/308 (34.09%), Postives = 143/308 (46.43%), Query Frame = 3 Query: 36 TMRAVLSLLCMAVAVVGKKQEEA----LNKDTTPFWLRDQLDGMCLGPDGFGACDAGSLWVLALKHPKKLTQAFVSMLAPEPESMCLG----SSSGGMFSSRRRVG-VSKCGSGNAK------NMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQLCTKGTA----------LEVVETPIHVAGMQIATADDYCFDGARFRSCNDGDPTLRWGIGMDF-RSTEPSRNLFYFFDREKCAVRE-GETARKGDCKNKGAARWGWRDGKLTQ-GGKHCLGRGRDNKAIMVPCSEGHEHVSFVTPEI 875
TM +LL + G Q N+ T F+LRD DGMCLG GF C+ SLW+ A + K + V +L P+ CL +GG S R + V + +GN N D+ V Q K L +NSA M C K T+ LEVVET +H G + +ADDYCFDG +FR C+ D WGIG++F + + SR L F C V + + G+C++ RWG ++GKL++ GK C+ R DN A PC+E E + TPEI
Sbjct: 4 TMHWKTTLLLFTLLATGSDQANQDSANNNRGLTAFFLRDPTDGMCLGTHGFTECNTESLWLYASRGRNK-GHSLVLVLYPDFNGSCLSRLGPGVTGGPCSKRESMHWVIEGPNGNGHYRVKQTNTNAKDMCVARYKAATKKQSKELL-------KNSATMIPC-KPTSNKSEESGYVELEVVETAVHDVGFYLKSADDYCFDGLKFRECH-ADSNFLWGIGINFTKKGDLSRTLHKFHRPSSCLVEDHAGSLGLGNCESSKGQRWGLKEGKLSRDNGKICVVRKIDNAAATRPCTEAFE---YFTPEI 298
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Match: A0A7S2XYA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA8_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.490e-22 Identity = 69/181 (38.12%), Postives = 94/181 (51.93%), Query Frame = 3 Query: 45 AVLSLLCMAVAVVGKKQEEALNKDT------TPFWLRDQLDGMCLGPDGFGACDAGSLWVLALKHPKKLTQAFVSMLAPEPESMCLGSSSGGMFSSRRRVGVSKCGSGNAKNMGLSDLSVQGDSGFLLAQGKNCLARGQGRLRNSADMQLCTKG-TALEVVETPIHVAGMQIATADDYCFD 566
A ++ + M +V K ++A KD PF+L+D LDG CLGP+GF ACD SLW+LA +K + V++L PE CLG+ SG V SKC + AK+ + D G Q K CL R + ++S +Q C G T L+VVET IH G + +AD CFD
Sbjct: 15 AAVAYIAMLASVHAKGDQKAAAKDAYQNRGNVPFFLQDPLDGECLGPNGFTACDTTSLWILA---GRKEGHSLVALLEPEEGKSCLGTGSG------NSVKASKCSTKQAKHWKI-DADRHGYYVISTDQAKMCLFRSKDPYKSSVKLQPCKSGYTPLQVVETAIHDVGFFLESADGMCFD 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1106.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1106.721.1 >prot_E-siliculosus-1a_F_contig1106.721.1 ID=prot_E-siliculosus-1a_F_contig1106.721.1|Name=mRNA_E-siliculosus-1a_F_contig1106.721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp MRAVLSLLCMAVAVVGKKQEEALNKDTTPFWLRDQLDGMCLGPDGFGACDback to top mRNA from alignment at E-siliculosus-1a_F_contig1106:4526..13507- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1106.721.1 ID=mRNA_E-siliculosus-1a_F_contig1106.721.1|Name=mRNA_E-siliculosus-1a_F_contig1106.721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8982bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:4526..13507- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1106:4526..13507- >mRNA_E-siliculosus-1a_F_contig1106.721.1 ID=mRNA_E-siliculosus-1a_F_contig1106.721.1|Name=mRNA_E-siliculosus-1a_F_contig1106.721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1106:4526..13507- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |