mRNA_E-siliculosus-1a_F_contig11038.711.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Match: A0A6H5JFE7_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE) HSP 1 Score: 343 bits (881), Expect = 8.910e-107 Identity = 231/316 (73.10%), Postives = 240/316 (75.95%), Query Frame = 1 Query: 1 MRLGRIFTAAAKGKNPDPGTFYSVENAPDPLASSGAAGSSQPAYDGGYGGGDAGFDISNGYNGXXXXFTARAEGWREGGXPRXXXXXXXXXXXXXXXXXXASGSRDYEGEMGVGSGESEASFDGCLYSGSGGS--GGASFGVEKTFLAFDADDDSTGGGMGGSVGCRDDGFGGHGVASGGGDFCAHERGEVEEDEMLEPFAEKRSWPPQPPDLPFRAHDDGGVSCSSDPPGGCDDAIVGAISGISG------GSSLSDSHQRVPRNTDGRAGVRGDIGQRQEGEMMSRPDVLPERSFFGRRRAAEDDWRDPGAATP 924
MRLGRIFTAAAKGKNPD GTFYSVENAPDPLASSGAAGSSQPAY GG AGFDISNG+N +TAR EGWREG X XXXXXXXXXXXXXXXXXXASG R YEGEM V SGE EASFDG LYSGSGG GGASFGVEKTF A+DADDDSTGGGMG SVG G F A ER EV+ E+LEPFAEKRSWPPQPPD P RAHD GG + + P GGCDDAIVG I+ ISG GSSLSDSHQ VPRN D RA RGDIGQ Q E MSRP VLPERSFFGR+ AAEDDWRD GAATP
Sbjct: 534 MRLGRIFTAAAKGKNPDSGTFYSVENAPDPLASSGAAGSSQPAYGGGXXXXXAGFDISNGHNCGGGGYTAREEGWREGXXXXXXXXXXXXXXXXXXXXXXASGPRGYEGEMRVESGEREASFDGRLYSGSGGGCGGGASFGVEKTFCAYDADDDSTGGGMGRSVGRXXXXXXXXXXXXXXG-FRAQER-EVDGKEILEPFAEKRSWPPQPPDFPCRAHD-GGATSTCVPHGGCDDAIVGGITEISGIXXXXGGSSLSDSHQGVPRNMDDRARDRGDIGQGQGRETMSRPGVLPERSFFGRQGAAEDDWRDSGAATP 846
BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Match: D8LDC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC2_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 6.250e-9 Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 2 Query: 647 MMMVVFRVVLILPVVVMTPLLERSPGSPAEVA----SVTVTNGFRGTRMVEQGCEAT 805
MMMVVFRVVLILPVVVM PLLE SP SP A +VTV FRG M QGCEAT
Sbjct: 1 MMMVVFRVVLILPVVVMAPLLEGSPVSPVSPAEASVTVTVIKAFRGIWMAGQGCEAT 57 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11038.711.1 >prot_E-siliculosus-1a_F_contig11038.711.1 ID=prot_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp MRLGRIFTAAAKGKNPDPGTFYSVENAPDPLASSGAAGSSQPAYDGGYGGback to top mRNA from alignment at E-siliculosus-1a_F_contig11038:68..1351+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11038.711.1 ID=mRNA_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11038:68..1351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11038:68..1351+ >mRNA_E-siliculosus-1a_F_contig11038.711.1 ID=mRNA_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11038:68..1351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |