mRNA_E-siliculosus-1a_F_contig1100.695.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI) HSP 1 Score: 237 bits (604), Expect = 5.700e-79 Identity = 116/123 (94.31%), Postives = 116/123 (94.31%), Query Frame = 1 Query: 1 EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKARTAGLCVWSTISLERYVSVVGVKPHSGNL 369
EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKK VWSTISLERYVSVVGVKPHSGNL
Sbjct: 4 EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKEG-----VWSTISLERYVSVVGVKPHSGNL 121
BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Match: A0A7S2V359_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V359_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.230e-33 Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 1 Query: 4 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKARTAGLCVWSTISLERYVSV-VGVKPHSG 363
K L+ IHC+DD S DGE GGS KRM Y HK YQ ATANPE+P +I K++AGPL+ + +MIGS F+V +T+EEA F +NDPF KA VW ++++ RYVS+ G+ H+G
Sbjct: 50 KQLWLIHCVDDDSSPLEDGETFGGSGKRMAVYAEHKVYQGATANPENPEYIRKLAAGPLLTDEGTHMIGSTFIVESTKEEAIAFNENDPFAKAG-----VWKSVNISRYVSIPAGLIAHAG 165 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1100.695.1 >prot_E-siliculosus-1a_F_contig1100.695.1 ID=prot_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=124bp EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRback to top mRNA from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1100.695.1 ID=mRNA_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1551bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ >mRNA_E-siliculosus-1a_F_contig1100.695.1 ID=mRNA_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |