mRNA_E-siliculosus-1a_F_contig10986.672.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10986.672.1 vs. uniprot
Match: D7FHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF1_ECTSI) HSP 1 Score: 137 bits (345), Expect = 3.890e-40 Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 Query: 1 SGAKPLALSDVSLIDEALGRSLGSVAELAHEVEEAKAALGGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW 222
+GAKPLALSDV LIDEALGRSLGSVAELA EVEEAKAALGGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW
Sbjct: 43 AGAKPLALSDVGLIDEALGRSLGSVAELAREVEEAKAALGGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW 116
BLAST of mRNA_E-siliculosus-1a_F_contig10986.672.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.280e-34 Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1 Query: 1 SGAKPLALSDVSLIDEALGRSLGSVAELAHEVEEAKAALGGEGSGVKAAVRSMSELEEYAENLCLSWTLPGYPW 222
+GAKPLALSDVSLIDEALGRSLGSVAELA +VEEAKAALGG GSGVKAAV+SMSELEEYAENLCLSWTLPGYPW
Sbjct: 2087 AGAKPLALSDVSLIDEALGRSLGSVAELAQQVEEAKAALGGVGSGVKAAVQSMSELEEYAENLCLSWTLPGYPW 2160 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10986.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10986.672.1 >prot_E-siliculosus-1a_F_contig10986.672.1 ID=prot_E-siliculosus-1a_F_contig10986.672.1|Name=mRNA_E-siliculosus-1a_F_contig10986.672.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp SGAKPLALSDVSLIDEALGRSLGSVAELAHEVEEAKAALGGEGSGVKAAVback to top mRNA from alignment at E-siliculosus-1a_F_contig10986:103..1248+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10986.672.1 ID=mRNA_E-siliculosus-1a_F_contig10986.672.1|Name=mRNA_E-siliculosus-1a_F_contig10986.672.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10986:103..1248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10986:103..1248+ >mRNA_E-siliculosus-1a_F_contig10986.672.1 ID=mRNA_E-siliculosus-1a_F_contig10986.672.1|Name=mRNA_E-siliculosus-1a_F_contig10986.672.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10986:103..1248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |