mRNA_E-siliculosus-1a_F_contig1097.669.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: A0A6H5LG67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG67_9PHAE) HSP 1 Score: 253 bits (646), Expect = 9.620e-83 Identity = 129/205 (62.93%), Postives = 138/205 (67.32%), Query Frame = 1 Query: 88 DASRKTWLRCKETDFGPRTLFGGEKYNAWDMHASLSQPKATGSRISRPFVCFFCRTDIGPGVQYFRLPDPTGKSNGDSTQK----------------------------------------IHYIHGDGSECVGKEVPEDNTAPCAGCDRADVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLERVNGRTPSTPI 582
DASRKT L+CKETDFGP TLF GEK NA DMH SLSQPK G R FVCF+CRTDIG GVQYFRLPDPTGK N D TQK IHYIHGDGS CVGK+VPEDNTAPCAGCD DVVLH +MG+ K +YFYC+ CAYTKRADI DVQEFSEIKRLER+NG TPSTP+
Sbjct: 4 DASRKTCLQCKETDFGPGTLFRGEKCNACDMHVSLSQPKRKG----RAFVCFYCRTDIGEGVQYFRLPDPTGKVNLDGTQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIHYIHGDGSHCVGKDVPEDNTAPCAGCDSDDVVLHDMMGLRKTEYFYCSPCAYTKRADIITDVQEFSEIKRLERMNGGTPSTPL 204
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: D8LGB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB1_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.000e-78 Identity = 127/195 (65.13%), Postives = 136/195 (69.74%), Query Frame = 1 Query: 1 MPSTTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLFGGEKYNAWDMHASLSQPKATGSRISRPFVCFFCRTDIGPGVQYFRLP-DPTGKSNGDSTQKIHYIHGDGSECVGKEVPEDNTAPCAGCDRADVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLERVNGRTPSTPI 582
MPS SKAWG I DEHENQPGQLPKFTA DASRKT + PR G + HA ++QP R P +C F + P R P P K+NGDSTQKIHYIHGDGSECVGKEVPEDNT PCAG RADVVLHG MG GKPQYFYCTRCAYTKRA IN DVQEFSEIKRLER+NGRTPST +
Sbjct: 1 MPSKPSKAWGPIFDEHENQPGQLPKFTADDASRKTLAPVQGNGLRPRHALPGREIQRV-RHACVAQPAEADWRQEVPPLCVF----LLPDRHRSRCPVHPADKTNGDSTQKIHYIHGDGSECVGKEVPEDNTVPCAGRVRADVVLHG-MGAGKPQYFYCTRCAYTKRAAINIDVQEFSEIKRLERMNGRTPSTTV 189
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.020e-23 Identity = 66/192 (34.38%), Postives = 96/192 (50.00%), Query Frame = 1 Query: 10 TTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLFGGEKYNAWDMHA-----SLSQPKAT---GSRISRPFVCFFCRTDIGPGVQYFRLPDPTGKSNGDSTQ-KIHYIHGDGSECVGKEVPEDNTAPCAG-CDRA--DVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLE 549
T ++ W A ++ E ++ A +RC D + G+K W M S+S P+ G + ++PF CFFCR IG Y R+P P G N + Q + Y+H DG+ CVGK VP D APCAG C ++ D L+ +MG+G YF+C C Y +RA + VQE ++RL+
Sbjct: 10 TDAEMWAAFSEDAELF-SEVVSLQDSHARGLCCIRCGLMDDFQQP---GDK--GWGMRGCSESFSVSAPEEANNGGKKFAKPFKCFFCRGVIGYSTPYLRMPHPLGGVNAWNNQPRFVYLHTDGASCVGKTVPTDTKAPCAGHCGKSSPDHSLYDMMGIGNDTYFFCDDCKYKRRAGVLGGVQELLLLRRLQ 195
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: D8LGB0_ECTSI (NAD dependent epimerase/dehydratase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB0_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 4.880e-8 Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1 Query: 460 QYFYCTRCAYTKRADINNDVQEFSEIKRLER 552
+YFYCTRCAYTKRA IN DVQEFSEIKRLER
Sbjct: 420 KYFYCTRCAYTKRAAINIDVQEFSEIKRLER 450 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1097.669.1 >prot_E-siliculosus-1a_F_contig1097.669.1 ID=prot_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=194bp MPSTTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLFback to top mRNA from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1097.669.1 ID=mRNA_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1043bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ >mRNA_E-siliculosus-1a_F_contig1097.669.1 ID=mRNA_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |