mRNA_E-siliculosus-1a_F_contig1094.653.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 588 bits (1515), Expect = 8.070e-206 Identity = 330/351 (94.02%), Postives = 331/351 (94.30%), Query Frame = 1 Query: 79 AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXX---VPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122 AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRG STGXXXXXX PPGINGQSTSPGAPSS G+KSEIDFETIAERLEASLRALQ GRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKN KEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ Sbjct: 29 AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGMSTGXXXXXXXXXTPPGINGQSTSPGAPSSSAAPAGAGATP--GSKSEIDFETIAERLEASLRALQAGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNIKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 377
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 545 bits (1404), Expect = 1.960e-186 Identity = 316/377 (83.82%), Postives = 322/377 (85.41%), Query Frame = 1 Query: 79 AGGTKAILATANRTERGQRLRAVNWVKQ---------------------VRNELTSAEFALNLNGATRGTSTGXXXXXX-----VPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAG---GEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122 AGGT AILATANRTERGQRLRAVNWVKQ VRNELTSAEFALNLNGATRG ST XXXXX PPGINGQS SPGAPS G+KSEIDFETIAERLEASLRALQ GRP+SLLEAISPDELREITARLK NLTKIKKITQAEGRSRDGTGGDSAG RSAG AG GEEGSSWRDAGGILGEMTEG+NVNLKDVKVPEF+LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDE+GGLAAGGSHGGG KNTKEIPEDSAVMLELRAIGEELEGRQEQL+RELDALKAEARAQEATWKTLERRKA RRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ Sbjct: 187 AGGTNAILATANRTERGQRLRAVNWVKQGAAFMPLMGAACDGRASLSRQVRNELTSAEFALNLNGATRGMSTDGXXXXXXXXXXTPPGINGQSASPGAPS--FSAAPAGATATPGSKSEIDFETIAERLEASLRALQAGRPMSLLEAISPDELREITARLKANLTKIKKITQAEGRSRDGTGGDSAGTRSAGAAGAAGGEEGSSWRDAGGILGEMTEGMNVNLKDVKVPEFNLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEQGGLAAGGSHGGGHKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKAIRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 561
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA) HSP 1 Score: 128 bits (321), Expect = 8.610e-31 Identity = 100/262 (38.17%), Postives = 134/262 (51.15%), Query Frame = 1 Query: 100 LATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXXVPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGR--PLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAG-------------------GILGEMTEGINVNLKDVK-----VPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEE 807 + A+RTERGQ+LRA+NWVKQVRN+LTSAEFAL L+ G + PG+ + S ID+++IA RLE++LR + EGR L L +A++ +EL E+ ARL ++ + + + D + G R E +E + D G ++ G + K PEF LFVRDDGTVDWDGAIQSGREVARFG+ELW+RINGQ+P EE Sbjct: 3 MTAASRTERGQKLRALNWVKQVRNDLTSAEFALQLDQGLSGAESRGAGGKV--PGLRRKWRS------------------------IDYDSIAVRLESNLRLINEGRVRSLGLDKAVTEEELAELQARLVKTMSDVSAAIVKQDQVDD----EERGLRK--EKFKQEQALHADTAPVEATNFAVTAPAKVAPPNGSSAQLVNGASAADAPQKGGAKLTPEFGLFVRDDGTVDWDGAIQSGREVARFGKELWERINGQDPVEE 232
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL) HSP 1 Score: 83.2 bits (204), Expect = 1.280e-13 Identity = 99/344 (28.78%), Postives = 156/344 (45.35%), Query Frame = 1 Query: 121 ERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXXVPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVN----LTKIKKITQAEGRSRDGTG---GDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVM---LELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122 +R QRL+ + WVK+V+++LT AEFAL +N + R PPG + G ID+ IA++L++SL A E + L++ + L+ K N + K+ ++ Q D +G G +AG+A E + + K +LFVRDDGTVDWDGA++SG+E+A FGQE+WDR+NG+ D L +N D ++ EL A+ +ELE Q R A+ EAR T + + +A +++ + + +++ L +D+DMERIC +EQ Sbjct: 241 DRLQRLKELAWVKEVKDDLTYAEFALTINPSIRRNH---------PPGYKIRRKVTG----------------------IDYFKIADKLDSSL-ARMERKKTWLIDVTEINALKARLRNTKKNVDELIVKMHELEQQADSEEDESGKKDGKEGTPSAAGKA--EVDGTDKSKXXXXXXXXXXXXXXXXXDKPLRLELFVRDDGTVDWDGAMESGKELAVFGQEVWDRLNGRTEDGYRSLP---------ENLFASDTDPLILKTKAELEALEQELETTT-QARNAKQAVLWEART---TGEPVSN-EARVELKALAQSVLELRRRVALQRLDLDMERICLYLEQ 536
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S4DP72_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP72_9EUKA) HSP 1 Score: 64.7 bits (156), Expect = 3.660e-8 Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 682 FDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQL 936 F L VR+DGTVDWDG I+ GREVA+FGQ+LW R+N ++ +E G+ G + I ++S + EL ++++ R +QL Sbjct: 130 FRLIVREDGTVDWDGVIEGGREVAQFGQDLWQRLNAKSSQDELSSMMMGAQGERELALNNIIQNSQKVKELNDKIQQIQHRVDQL 214
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.640e-8 Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 1 Query: 688 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATW-KTLERRKANRR------------IRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122 +FVR+DGTVDWDGA QSG+E+A++ E+ +R+ G++P EE A +T DS+ ++L L+R L L++E RA E K LE KA R+ +R ++Q ++++L +D+DMER C IEQ Sbjct: 379 VFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKA--------STSLATIDSSPGMQL-------------LQRYLQELESELRAAEDERDKILELHKALRKQNLDVSKAQKGELRIAEDQAVEMKRRVELQRLDMDMERACAYIEQ 515
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: K0RSL1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSL1_THAOC) HSP 1 Score: 64.3 bits (155), Expect = 1.460e-7 Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 688 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDE---EGGLAAGGS-HGGGDKNTKEIPEDSAVML---ELRAIGEELEGRQEQ----LRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIE 1119 L+VRDDGT+DWDGA+Q + +FG +W RING++P+E +GG+++ H G T +IPE A+ +L + +EL + + L L A +A A AT + R K IR+ +QLD ++ ++ ++ERI +E Sbjct: 277 LYVRDDGTIDWDGALQDREALKKFGSAVWSRINGRDPEEGGDDGGVSSADEFHSSGKAVTAKIPETVAIREKKDQLDRLKKELNEMETEHTKLLNSALSAGQAVANVNFATIDPILRVK----IRTSLDQLDKKRAEVSFQMLNYELERIYTYLE 427
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A1Z5JMY9_FISSO (LETM1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMY9_FISSO) HSP 1 Score: 62.0 bits (149), Expect = 9.070e-7 Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 637 TEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD 801 T N KD K + +L+VRDDGTVDWDGA+Q + +FG+ +W RING++PD Sbjct: 257 TTETNAREKDSKTNDPNLYVRDDGTVDWDGALQDQAALRKFGKAVWARINGRDPD 311
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S2A4H7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4H7_TRICV) HSP 1 Score: 60.1 bits (144), Expect = 3.280e-6 Identity = 49/162 (30.25%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 679 EFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAV---MLELRAIGEELEGRQEQLRRELD------------ALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIE 1119 + +L++RDDGT+DWDGAIQ + +FG +W RING +P+ G + ++ K+ E+ V ++E AI +E + R ++LR ELD A+KA + +L+ K IRS E L+ +++ ++ ++ERI +E Sbjct: 129 DMNLYIRDDGTIDWDGAIQDRAAIKKFGSSVWARINGVDPESIGDES--------ERELKKEEEEKKVTVKIVETEAIRKE-KARLDELRAELDKTQANHTALLNSAVKAGSAVANVNLASLDP-KLRAEIRSSAEALEKKQEEVSFQMLNYELERIFTYLE 280
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: B8C2L4_THAPS (LETM1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2L4_THAPS) HSP 1 Score: 59.3 bits (142), Expect = 7.810e-6 Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 619 GILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAA--GGSHGGGDKNTKEIPEDSAVMLELRAIGE 909 G G TE N P L+VR+DGT+DWDGA+Q + +FG +W RINGQ+P+ G + GG+ GD +A ++E AI E Sbjct: 280 GGKGNNTEATATNTATTFDPS--LYVREDGTIDWDGALQDREALKKFGSAVWSRINGQDPETSGDASEEEGGALTAGDDFHSPSKAVTAKIVETDAIRE 376 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1094.653.1 >prot_E-siliculosus-1a_F_contig1094.653.1 ID=prot_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=374bp GGGGGGGGGGGGGGGGAGEAAAAPAPAGGTKAILATANRTERGQRLRAVNback to top mRNA from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1094.653.1 ID=mRNA_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4405bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ >mRNA_E-siliculosus-1a_F_contig1094.653.1 ID=mRNA_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2244bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |