mRNA_E-siliculosus-1a_F_contig1094.649.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: D8LP06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP06_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 1.790e-141 Identity = 226/240 (94.17%), Postives = 228/240 (95.00%), Query Frame = 2 Query: 113 MYNLLCVAAAALACLSTANAFGLGGVAARGACRVSXXXXXXXXXX-VARRSLVPPSMSTMEASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHKQVLKEQKLAARRARGYEK 829 MYNLLCVAAAALACLSTANAFGLGG AARGACRVS VARRSLVPPSMSTMEASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYF+KEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHKQVLKEQKLAARRARGY+K Sbjct: 1 MYNLLCVAAAALACLSTANAFGLGGGAARGACRVSRASKAASSVTSVARRSLVPPSMSTMEASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFKKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHKQVLKEQKLAARRARGYDK 240
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A835ZJ48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ48_9STRA) HSP 1 Score: 179 bits (453), Expect = 5.010e-48 Identity = 88/164 (53.66%), Postives = 126/164 (76.83%), Query Frame = 2 Query: 257 RSLVPPSMSTMEASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAM 748 RS P ++ + S A+DVLADL+ LD+ M + +D DL+P+Q YLN+LA QAA+ +W++++ D+GS + VAI+TE+I+YLTKH+Q HP D+HSRRGLI +VN RR QLNY F EP+ CL++CA+LGIRF+P++ V+ REQ+Y+++ NTKSKIG R A+ Sbjct: 63 RSCSQPLVAPLRMSDASDVLADLEALDNAMSDDKEDS-DLEPRQPYLNRLAMQAARREWQRSENDSGSAEVQVAIMTERIIYLTKHLQTHPKDFHSRRGLIALVNNRRSQLNYLFENEPQRCLDLCASLGIRFKPRSAVQSREQKYSSFKNTKSKIGMLRAAAL 225
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.670e-43 Identity = 86/152 (56.58%), Postives = 121/152 (79.61%), Query Frame = 2 Query: 293 ASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAM 748 + A+DVLADL+ LDSV+ + +D DL+P+Q YLN+LA QAA+ +W+++D D+GS + VAI+TE+I+YLTKHMQ HP D+HSRRGLI +VNKRR QLN+ F + + CLE+CA+LGIRF+P++ V+ REQ+Y+++ NTKSKIG R A+ Sbjct: 46 SDSASDVLADLEALDSVLSEDKEDA-DLEPRQPYLNRLAMQAARREWQRSDNDSGSAEVQVAIMTERIIYLTKHMQTHPKDFHSRRGLIALVNKRRSQLNFLFEHDAERCLELCASLGIRFKPRSAVQSREQKYSSFKNTKSKIGMLRAAAL 196
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7S2S8K6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8K6_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.310e-23 Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 2 Query: 392 YLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAY 703 +LN A AAQ KW+++D D+GSP +A+ E+I YLT H+Q++P D+ SRRGL+ +VNKRRR LNY +RK P++ + M LG+RF+P V+ RE++YA Y Sbjct: 112 FLNLQALLAAQQKWKRHDSDSGSPEYQIAVAHERIKYLTAHLQRNPKDFASRRGLVAIVNKRRRLLNYLYRKNPEKAMGMVTELGVRFKPPGTVQTREEKYAVY 215
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A482SQL1_9ARCH (30S ribosomal protein S15 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQL1_9ARCH) HSP 1 Score: 106 bits (264), Expect = 3.240e-23 Identity = 58/135 (42.96%), Postives = 92/135 (68.15%), Query Frame = 2 Query: 398 NKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSKIGNARRTAMLNKERVDHKQVLKEQKLA 802 N+ A AA LKWR++++DTGSP + VA++TE+I YLT H+ +HP D ++RGL +VN RR LN+ + ++ +MCA LGIR++P +V +E +Y+A+ NTK+K A++ L K+R KQ L ++++A Sbjct: 4 NRAAIAAAILKWRRDERDTGSPEVQVAVMTERIRYLTSHLLKHPQDKSTKRGLTALVNDRRNNLNFLHSVDAEKARQMCAELGIRWKPPGQVWDKEAKYSAFKNTKNKKAEAKK---LVKKRA--KQALLDKQMA 133
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7S0CN17_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CN17_9STRA) HSP 1 Score: 102 bits (253), Expect = 5.950e-21 Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 2 Query: 308 DVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 721 D L ++ ELD V T + D A+ +L A + +WR +D D GSP + VA +TE+I YLT+H+++HP D+ ++RGL+ +VNKRR+ LNY + K P+ E+ A LG+R +P +V+ R ++Y AY K K Sbjct: 70 DFLLNIGELDPADNVPTDEVPD---NYAHQQRLI--ATRKEWRTSDIDCGSPDVQVAGMTERITYLTRHLKEHPKDFSTKRGLLALVNKRRKLLNYLYSKNPERYAELVAALGVRHKPVGRVQSRSEKYGAYPQQKPK 202
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7S1C329_9STRA (30S ribosomal protein S15 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C329_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.430e-20 Identity = 54/138 (39.13%), Postives = 86/138 (62.32%), Query Frame = 2 Query: 308 DVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 721 D + + +ELD+ E++ P +Y + ++ + KW + + D+GSP +A +TE+I+YLTKHMQQ+P D+ +RRGL+ +VNKRRR LNY FR + +E+ A+LGIR + +V RE+ Y ++ K K Sbjct: 19 DYILESNELDASEDTESE------PSSSYTHSVSLDEIRKKWARAENDSGSPEFQIAGMTERIMYLTKHMQQNPKDFSTRRGLLALVNKRRRLLNYLFRVNQDKYVEIIASLGIRHKAPGRVMTREEVYGRFSQRKKK 150
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7R9ZK55_9STRA (30S ribosomal protein S15 n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZK55_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.750e-20 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 431 WRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKS 718 WR++++DTGSP VA +TE+I YLTKH+QQ+P DY +RRGL+ +VNKRRR LNY R++ ++ ++ ++LGIR + +V RE +Y + KS Sbjct: 82 WRRSEKDTGSPEFQVAGMTERISYLTKHLQQNPKDYSTRRGLVALVNKRRRLLNYLIREDEQKYADIISSLGIRHKAPGRVESREDKYGRFNKQKS 177
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7S2IEZ5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEZ5_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.800e-19 Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 2 Query: 290 EASGAADVLADLDELDSVMGVETQDQQDLKPKQAYLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAYTNTKSK 721 EA A D + +LD + D L + Y ++L Q +L++R+++ DTGSP VA +TE+I YLTKH+++HP D+ +RRGL+ +VNKRRR LNY FR++ + + ++GIR + +V+ RE +Y + K K Sbjct: 60 EAEEAEDFIVSAGDLDDEDAGDEDD--SLAVPEWYAHQLRVQELRLQYRRHENDTGSPEYQVAGMTERISYLTKHLKEHPKDFSTRRGLVALVNKRRRLLNYLFREDIERYRAIVTSMGIRHKAPGRVQSREDKYGRFPPQKEK 201
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Match: A0A7S1XRX6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRX6_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.700e-19 Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 392 YLNKLAGQAAQLKWRKNDQDTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRRQLNYYFRKEPKECLEMCATLGIRFRPKTKVRGREQRYAAY 703 + NK A AA K++K+++DTGS +A L+ +I Y+T+H ++HP D+HSRRGLITMVNKRRR LNY + +P+ + + LGIRF+ ++ R +RYAA+ Sbjct: 107 WSNKQAINAATEKFKKHEKDTGSAEFQIAKLSARITYMTEHAKRHPKDHHSRRGLITMVNKRRRLLNYLNKTDPEAVERITSELGIRFKAAGRIMTRAERYAAF 210 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1094.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1094.649.1 >prot_E-siliculosus-1a_F_contig1094.649.1 ID=prot_E-siliculosus-1a_F_contig1094.649.1|Name=mRNA_E-siliculosus-1a_F_contig1094.649.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=240bp MYNLLCVAAAALACLSTANAFGLGGVAARGACRVSRASKASSVTSVARRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1094:14803..20719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1094.649.1 ID=mRNA_E-siliculosus-1a_F_contig1094.649.1|Name=mRNA_E-siliculosus-1a_F_contig1094.649.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:14803..20719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:14803..20719- >mRNA_E-siliculosus-1a_F_contig1094.649.1 ID=mRNA_E-siliculosus-1a_F_contig1094.649.1|Name=mRNA_E-siliculosus-1a_F_contig1094.649.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:14803..20719- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |