mRNA_E-siliculosus-1a_F_contig1092.640.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: D7G3Q7_ECTSI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q7_ECTSI) HSP 1 Score: 347 bits (891), Expect = 9.140e-118 Identity = 193/198 (97.47%), Postives = 193/198 (97.47%), Query Frame = 1 Query: 1 MVASLTSIAALLALVWPASAFVKPNVGSSLQARTRGVRDAAPASAPRLSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
MVASLTSIAALLALVWPASAFVKPNVGSSLQARTRGVRDAAPASAPRLSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKK VIADADEYGAAVLGVPMKATVK
Sbjct: 1 MVASLTSIAALLALVWPASAFVKPNVGSSLQARTRGVRDAAPASAPRLSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKK-----VIADADEYGAAVLGVPMKATVK 193
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A835YTP8_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP8_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.140e-52 Identity = 92/143 (64.34%), Postives = 119/143 (83.22%), Query Frame = 1 Query: 166 VENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
V++VAA++LAGGVG RM+A MPKQFLEL+G+ VL+HSL+LF L G+S++ILV+D+QYR + +Q+ E RLVFADPG+ERQ+SV+N LQ V +G+S+VCIHDAARPLVTK + Y V+ DA+E+GAAVLGVPMKATVK
Sbjct: 48 VQDVAAIILAGGVGSRMKANMPKQFLELRGKPVLQHSLELFRSLDGISRIILVIDQQYRDQFKTMQEEEPRLVFADPGIERQNSVFNGLQAVHEGASVVCIHDAARPLVTKECI-----YQVLRDAEEHGAAVLGVPMKATVK 185
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S2V2L3_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2L3_9STRA) HSP 1 Score: 163 bits (412), Expect = 2.940e-46 Identity = 91/143 (63.64%), Postives = 107/143 (74.83%), Query Frame = 1 Query: 166 VENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
VE V+ V+LAGGVG RM+A PKQFLEL G VL+H++ LF L+GV Q+ILVLDEQYRP Q + E RL FADPG ERQ SV N L V +G+SLVC+HDAARPLVT + + VIADA+E+GAAVLGVPMKATVK
Sbjct: 64 VEKVSVVLLAGGVGSRMKADRPKQFLELLGRPVLDHTIDLFRSLRGVDQIILVLDEQYRPNYQSVSDEEPRLKFADPGKERQDSVCNGLSLVGEGASLVCVHDAARPLVTPENIHQ-----VIADAEEHGAAVLGVPMKATVK 201
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A6H5L038_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L038_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.980e-46 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 Query: 148 MAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGL 402
MAAGPTVENVAAVVLAGGVGKRMEA MPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPML+DLQKREGRLVFADPGL
Sbjct: 1 MAAGPTVENVAAVVLAGGVGKRMEADMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLRDLQKREGRLVFADPGL 85
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S1UCG6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCG6_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.820e-43 Identity = 94/174 (54.02%), Postives = 116/174 (66.67%), Query Frame = 1 Query: 73 NVGSSLQARTRGVRDAAPASAPRLSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
+GS +A + APA AP+ +VA V+LAGGVG RM+A PKQFL L G+ VLEH+++LF ++GVSQ++LVLDEQYR + + R VFADPG ERQ SV N L KV DG+SLV +HDAARPLVT A + Y V+ D E+GAAVLGVPMKATVK
Sbjct: 26 RLGSGRRASALRMSAKAPAGAPK----------DVAVVLLAGGVGSRMKADRPKQFLTLAGKPVLEHTIELFRGIEGVSQIVLVLDEQYRGEWKKFAAADERFVFADPGKERQDSVENGLSKVVDGASLVAVHDAARPLVTPAEI-----YNVLMDGVEHGAAVLGVPMKATVK 184
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S2DHR1_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHR1_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.610e-43 Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 1 Query: 166 VENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
VENVA ++LAGGVG RM+A PKQFLEL G+ VL H+L+LFL L G+++++LV+D +Y + LQ +L+FA PG ERQ SV+N LQK+ D + +VCIHDAARPL+T A+ Y V+ D E+GAAVLGVPMKATVK
Sbjct: 66 VENVAVILLAGGVGSRMKANQPKQFLELLGKPVLMHTLELFLSLDGIARVVLVIDAKYESQFEPLQALNPKLIFAPPGKERQDSVFNGLQKINDDAPVVCIHDAARPLITPEAI-----YKVLRDGIEHGAAVLGVPMKATVK 203
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S0Y4H2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4H2_HEMAN) HSP 1 Score: 150 bits (378), Expect = 7.380e-42 Identity = 84/151 (55.63%), Postives = 106/151 (70.20%), Query Frame = 1 Query: 142 LSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
L AA V+ V ++LAGGVG RM+AG PKQFLEL+G+ +L HSL LF L+GV + +V+ E+YR M D+ K++ R+ FA PG ERQ SV+N LQ+V D ++LV +HDAARPLVT V Y V DA E+GAAVL VPMKATVK
Sbjct: 72 LRAAASSGVDGVGVILLAGGVGSRMKAGKPKQFLELEGKPMLMHSLDLFRGLEGVDSITIVIAEEYRDMFDDIVKKDDRIRFAGPGKERQDSVFNGLQQVPDSATLVAVHDAARPLVTPEEV-----YNVFRDAKEHGAAVLAVPMKATVK 217
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A0G4G666_VITBC (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G666_VITBC) HSP 1 Score: 150 bits (379), Expect = 2.550e-41 Identity = 88/157 (56.05%), Postives = 110/157 (70.06%), Query Frame = 1 Query: 124 PASAPRLSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
P A LS + V+NV ++LAGGVGKRM A PKQFLEL G+ VLEHS++LFL L GV ++LVLDE YR + R+ R+VFA PG ERQ SV+N LQ + +G S+VCIHD+ARPLVT+ V + I DA+ +GAAV+GVPMKATVK
Sbjct: 48 PLLAASLSPSVDGHVDNVGVILLAGGVGKRMNADRPKQFLELMGKPVLEHSVELFLTLPGVKHIVLVLDEAYRDTFRG---RDERIVFAPPGEERQDSVWNGLQAMPEGVSVVCIHDSARPLVTQGTVLQC-----IRDANTHGAAVVGVPMKATVK 196
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S0VEW7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VEW7_9CRYP) HSP 1 Score: 147 bits (372), Expect = 1.430e-40 Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = 1 Query: 142 LSMAAGPTVENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
L AA V+ V ++LAGGVG RM+AG PKQFLELQG+ +L HSL LF L+G+ + +V+ E+YR M D+ K + R+ FA PG ERQ SV+N LQ+V + + LV +HDAARPLVT V Y V DA E+GAAVL VPMKATVK
Sbjct: 49 LRSAASSGVDGVGVILLAGGVGSRMKAGKPKQFLELQGKPMLMHSLDLFRGLEGIESITIVIAEEYRDMFDDIVKADDRIRFAGPGKERQDSVFNGLQQVPESAKLVAVHDAARPLVTPEEV-----YNVFRDAKEHGAAVLAVPMKATVK 194
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Match: A0A7S4UD44_GUITH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UD44_GUITH) HSP 1 Score: 147 bits (370), Expect = 9.760e-40 Identity = 76/143 (53.15%), Postives = 111/143 (77.62%), Query Frame = 1 Query: 166 VENVAAVVLAGGVGKRMEAGMPKQFLELQGETVLEHSLKLFLRLKGVSQLILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKASCYFVIADADEYGAAVLGVPMKATVK 594
+++V+ ++LAGGVG RM+A PKQFLEL+G+ +L HSL+LF++++GV+++++V+ +YR L D+ K++ R+ FA+PG ERQ SV+N LQ+ +SL+CIHDAARPLVT+ + SC + DA E+GAAVL VPMKATVK
Sbjct: 89 IDDVSVILLAGGVGSRMKADRPKQFLELEGKPILRHSLELFMKIQGVTRIVIVIAPEYRDSLADVTKKDARICFAEPGKERQDSVFNGLQETALDTSLICIHDAARPLVTEQEIL--SC---MNDALEHGAAVLAVPMKATVK 226 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1092.640.1 >prot_E-siliculosus-1a_F_contig1092.640.1 ID=prot_E-siliculosus-1a_F_contig1092.640.1|Name=mRNA_E-siliculosus-1a_F_contig1092.640.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=198bp MVASLTSIAALLALVWPASAFVKPNVGSSLQARTRGVRDAAPASAPRLSMback to top mRNA from alignment at E-siliculosus-1a_F_contig1092:32415..37780+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1092.640.1 ID=mRNA_E-siliculosus-1a_F_contig1092.640.1|Name=mRNA_E-siliculosus-1a_F_contig1092.640.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:32415..37780+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:32415..37780+ >mRNA_E-siliculosus-1a_F_contig1092.640.1 ID=mRNA_E-siliculosus-1a_F_contig1092.640.1|Name=mRNA_E-siliculosus-1a_F_contig1092.640.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1188bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:32415..37780+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |