mRNA_E-siliculosus-1a_F_contig1092.636.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Match: D7FHU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU7_ECTSI) HSP 1 Score: 152 bits (384), Expect = 8.460e-47 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 Query: 1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT
Sbjct: 1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 78
BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.290e-38 Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 Query: 1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAG HR +GGGT
Sbjct: 787 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGLHRAKGGGT 864 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1092.636.1 >prot_E-siliculosus-1a_F_contig1092.636.1 ID=prot_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=79bp MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELback to top mRNA from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1092.636.1 ID=mRNA_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ >mRNA_E-siliculosus-1a_F_contig1092.636.1 ID=mRNA_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |