mRNA_E-siliculosus-1a_F_contig1092.635.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: D7FJC0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC0_ECTSI) HSP 1 Score: 627 bits (1617), Expect = 2.650e-223 Identity = 337/378 (89.15%), Postives = 344/378 (91.01%), Query Frame = 1 Query: 1 RCFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEHGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAENQEGDGGGSCEGRGAPAGGGQQSRPPAGGPAAEPRVSLLQGLRAQGVLSVDADQVAEILLAGPSPTAAPGTTTSTTAAAPTSPTTGDDGWRSGPGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGQAAGDGRVIWRRVLPAESFGREAAAVAEVLREVGAGGDALHAERSGAPCHKEAAEGAAPAALPPSRQLRLRRHPPSSGSRARRLARA 1134
RCFRSFVDRFAPNIFSTAQEEAGGG TLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW FVTLFASQTPAPALLHLWRLMLE+GDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAE+QEGDGGGSCEGRGAPAGG QQS PPAGGPAAEPRVSLLQGLRA+GVLSVDADQVAEILLAGPS TAAPG PTSP TGDDGWRSG GRIGGRFVLVDCRPPAPGGEGPAGGGMRAGG+AAGDGRV+WRR+ PAESFGREAAAVAEVLREVGAGGDALHA + A AALPPSRQLRLRR PPSSGSRARRLARA
Sbjct: 116 RCFRSFVDRFAPNIFSTAQEEAGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW--FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDQEGDGGGSCEGRGAPAGGEQQSGPPAGGPAAEPRVSLLQGLRAEGVLSVDADQVAEILLAGPSSTAAPGXXXXXXXXXPTSPATGDDGWRSGSGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGEAAGDGRVMWRRIRPAESFGREAAAVAEVLREVGAGGDALHAAAT------------AEAALPPSRQLRLRRQPPSSGSRARRLARA 479
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE) HSP 1 Score: 589 bits (1518), Expect = 1.080e-202 Identity = 314/351 (89.46%), Postives = 320/351 (91.17%), Query Frame = 1 Query: 1 RCFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEHGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAENQEGDGGGSCEGRGAPAGGGQQSRPPAGGPAAEPRVSLLQGLRAQGVLSVDADQVAEILLAGPSPTAAPGTTTSTTAAAPTSPTTGDDGWRSGPGRIGGRFVLVDCRPPAPGGEGPAGGGMRAGGQAAGDGRVIWRRVLPAESFGREAAAVAEVLREVGAGGDALHAERSGAPCHKEAAEGAAPA 1053
RCFRSFVDRFAPNIFSTAQEE GGG TLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW FVTLFASQTPAPALLHLWRLMLE+GDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAE++EGDGGGSCEG GAPAGG QQS PPAGGPAAEPRVSLLQGLRA+ VLSVDADQVAEILLAGPS TA P AAAPTSP TGDDGWRSG + GG FVLVDCRPPAP EGPAGGGMRAGG+ AGDGRVIWRRV PAESFGREA AVAEVLREV AG DALH ERSGAPCHKEA EGAAPA
Sbjct: 169 RCFRSFVDRFAPNIFSTAQEETGGGTTLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPW--FVTLFASQTPAPALLHLWRLMLEYGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFAEDREGDGGGSCEGPGAPAGGRQQSGPPAGGPAAEPRVSLLQGLRAEEVLSVDADQVAEILLAGPSSTAVPA------AAAPTSPATGDDGWRSGSRKFGGTFVLVDCRPPAPESEGPAGGGMRAGGEPAGDGRVIWRRVHPAESFGREAVAVAEVLREVEAGEDALHGERSGAPCHKEAVEGAAPA 511
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: A0A086Q273_TOXGO (TBC domain-containing protein n=18 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086Q273_TOXGO) HSP 1 Score: 94.4 bits (233), Expect = 4.130e-17 Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 1 Query: 1 RCFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEHGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLRLRSAGVVDDVFRAAVALRESTPRLF 465
RCF +FV RF P +F + L+ L + LL +HDPALAA +++ +V+P Y TPW F+TLF+S+T L LW + GDP FL+LA L+ R + T +P T+S + + S + +++ A L+ TP F
Sbjct: 1175 RCFHAFVRRFLPGMFCDDE--------FTSLQCAFHLFKHLLTYHDPALAAFLERHYVTPELYVTPW--FLTLFSSKTSLLVLFALWDKYVAEGDPNFFPFLALALLICFRREIQRTEVSQLPETLSKITIHSVEQLRELWDLANELKAQTPLSF 1319
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: D7FKI7_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 3.770e-16 Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 1 Query: 4 CFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLWRLMLEHGDPVLHQFLSLAWLVSNRLVLMETPPDDMPATVSGLR--LRSAGVVDDVFRAAVALRESTPRLFCDVLRRACFA 495
C+ +F+ RF P F+ +E + L+ L LL +H P L +D+ + P YATPW F+TLF++ P L +W L GDP LH F+ LA+++ N +++ ++P T+ L +RS V + R A L +TP+ F +LR A +A
Sbjct: 125 CYSAFLRRFLPYAFNQDEE-------FLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPW--FMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEAILKAEEANLPETMCRLTDGMRSVEEVRALMRTAKDLMLNTPKSFRKILRSALYA 281
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: UPI00096B5808 (LOW QUALITY PROTEIN: TBC domain-containing protein kinase-like protein n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5808) HSP 1 Score: 56.6 bits (135), Expect = 5.310e-5 Identity = 35/113 (30.97%), Postives = 56/113 (49.56%), Query Frame = 1 Query: 4 CFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLW-RLMLEHGDPVLHQFLSLAWLVSNRLV 339
C +FV ++ F V++ +L QL+ FHDP LA H+++ P +A PW F+T+F+ P +LHLW +L+L LH LS+ + +RL+
Sbjct: 535 CLSAFVPKYLHQFFLKDNS--------AVIQEYLAKFSQLIAFHDPQLANHLNEINFYPELFAIPW--FLTVFSHVFPLYKILHLWDKLLLGDSSYPLHIGLSVLTQLRDRLL 637
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: A0A8K0D7L6_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0D7L6_9COLE) HSP 1 Score: 56.6 bits (135), Expect = 5.330e-5 Identity = 32/104 (30.77%), Postives = 50/104 (48.08%), Query Frame = 1 Query: 4 CFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLW-RLMLEHGDPVLHQFLSL 312
C +F+ ++ N F V+++ +L QL+ FHDP LA H+ P +A PW F+T+F+ P + HLW +L+L LH LS+
Sbjct: 549 CLSAFIPKYLHNFFLKDNS--------VIIQEYLAKFSQLIAFHDPVLANHLQNINFVPELFAIPW--FLTMFSHVFPLHKIFHLWDKLLLGDSSFPLHVGLSI 642
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Match: A0A7J7B0I1_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7B0I1_9COLE) HSP 1 Score: 56.2 bits (134), Expect = 7.080e-5 Identity = 33/104 (31.73%), Postives = 49/104 (47.12%), Query Frame = 1 Query: 4 CFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAAHMDKCFVSPAAYATPWWVFVTLFASQTPAPALLHLW-RLMLEHGDPVLHQFLSL 312
C F+ ++ N F V++ +L QL+ FHDP LA H+ P +A PW F+T+F+ P +LHLW +L+L LH LS+
Sbjct: 553 CLSMFIPKYLHNFFLKDNS--------AVIQEYLAKFSQLIAFHDPTLANHLQNINFIPELFAIPW--FLTMFSHVFPLHKILHLWDKLLLGDSSFPLHVGLSI 646 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1092.635.1 >prot_E-siliculosus-1a_F_contig1092.635.1 ID=prot_E-siliculosus-1a_F_contig1092.635.1|Name=mRNA_E-siliculosus-1a_F_contig1092.635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=379bp RCFRSFVDRFAPNIFSTAQEEAGGGATLVVLEAHLVLLEQLLRFHDPALAback to top mRNA from alignment at E-siliculosus-1a_F_contig1092:103..2040+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1092.635.1 ID=mRNA_E-siliculosus-1a_F_contig1092.635.1|Name=mRNA_E-siliculosus-1a_F_contig1092.635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:103..2040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:103..2040+ >mRNA_E-siliculosus-1a_F_contig1092.635.1 ID=mRNA_E-siliculosus-1a_F_contig1092.635.1|Name=mRNA_E-siliculosus-1a_F_contig1092.635.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2274bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:103..2040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |