mRNA_E-siliculosus-1a_F_contig10885.602.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE) HSP 1 Score: 183 bits (464), Expect = 3.060e-53 Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWG---GGFYNKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F QLMVVALVQKCGREAR+KGRDPPTNLGFLLEEFFDFYGNQLNYAAVG+ + G GGFYNKRDTGWFNESHPFRLSMQNPHET VDTGSNSYKV Sbjct: 351 FLLQLMVVALVQKCGREARDKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGITLLGEGGGGFYNKRDTGWFNESHPFRLSMQNPHETNVDTGSNSYKV 447
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A7S2RIZ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIZ8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.610e-16 Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAR-------EK----GRDPPT--NLGFLLEEFFDFYGNQLNYAAVGVCVWGGG-FYNKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKVGPV 291 F Q+MVV+ Q E+ EK G DP NLG LL EF D YGN+ NY VG+ V G ++ KRD GWFN + P L+++NP E T+D G N++ +G + Sbjct: 9 FLLQMMVVSFFQHRNSESSSHTHFQPEKQSAAGADPDRGLNLGRLLLEFLDLYGNKFNYEIVGISVQNSGSYFPKRDRGWFNPARPSLLALENPLEPTLDVGKNAFNMGNI 119
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A1V9ZX42_9STRA (Poly(A) RNA polymerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX42_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.620e-15 Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFYNKRDT-GWFNESHPFRLSMQNPHETTVDTGSNSYKVGPV 291 F QL+VV+ +Q+ R NLG LL EFF+ YGN LN + VG+CV GG Y +D W + + PF L ++NPH+ + D +NSY + V Sbjct: 278 FLLQLLVVSFLQQYARNHTRSNEH--LNLGVLLVEFFELYGNSLNQSTVGICVRNGGSYFMKDERDWRDANRPFMLCVENPHDPSHDVAANSYDIRKV 373
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A6G0W652_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W652_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.270e-15 Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFYNKR-DTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F QLMVV+ +Q R +R R+ T+LG LL FFD YGN N + + V GG Y K+ D W N P LSM+NPH+ T+D GSNS+++ Sbjct: 297 FLLQLMVVSFLQHSNRNSRY--RNEGTDLGHLLFGFFDLYGNIFNSFDLTISVSNGGAYLKKTDLNWKNYQRPELLSMENPHDRTLDVGSNSFEI 389
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A418FHG9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FHG9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.890e-13 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREA--REKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFY-NKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F QLMVV+ +Q R + +G+D LG LL +FFD YGN N + + + V GG Y K W N S P LSM+NPH+T D G+NSY+V Sbjct: 180 FLLQLMVVSFLQHKNRLSVYSTQGQD----LGHLLVDFFDLYGNVFNSSDLSISVREGGAYVTKESKDWKNFSRPDLLSMENPHDTNHDVGANSYEV 272
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: W4GG04_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GG04_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 2.550e-13 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREA--REKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFY-NKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F QLMVV+ +Q R + +G+D LG LL +FFD YGN N + + + V GG Y K W N S P LSM+NPH+T D G+NSY+V Sbjct: 304 FLLQLMVVSFLQHKNRLSVYSTQGQD----LGHLLVDFFDLYGNVFNSSDLSISVREGGAYVTKESKDWKNFSRPDLLSMENPHDTNHDVGANSYEV 396
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A024TX62_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TX62_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.220e-12 Identity = 40/95 (42.11%), Postives = 52/95 (54.74%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFY-NKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F QLMVV+ +Q R + + +LG LL +FFD YGN N + + V GG Y K W N P LSM+NPH+T D G+NSY+V Sbjct: 305 FLLQLMVVSFLQHKNRNSSYS--NSMQDLGHLLVDFFDLYGNVFNSTDLTISVRDGGAYVMKESRNWKNYQRPDLLSMENPHDTNHDVGANSYEV 397
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A2N1JD47_9BASI (Polynucleotide adenylyltransferase n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1JD47_9BASI) HSP 1 Score: 69.7 bits (169), Expect = 8.100e-12 Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 1 FFFQLMVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWG-GGFYNKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKV 282 F LMV++ +Q + RE+ P NLG LL E + YG Y G+ V G GG++NKR GW++ PF LS+++PH+ T D S+ V Sbjct: 228 FSVTLMVLSFLQLHPKIQREE-IVPEKNLGTLLMELLELYGKNFGYDESGITVRGMGGYFNKRQRGWYDGRKPFLLSIEDPHDVTNDISKGSFAV 321
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: J6EQG8_TRIAS (Polynucleotide adenylyltransferase n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6EQG8_TRIAS) HSP 1 Score: 69.7 bits (169), Expect = 8.160e-12 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1 Query: 70 DPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGG-FYNKRDTGWFNESHPFRLSMQNPHETTVDTGSNSYKVGPV 291 DP NLG LL EFF+ YG NY VG+ V GG ++ KR GW+ +S PF L +++P +T D +S+ + V Sbjct: 294 DPVKNLGVLLVEFFELYGRSFNYDEVGISVRKGGRYFPKRSRGWYLDSQPFLLCIEDPQDTDNDVSKSSFGIRQV 368
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Match: A0A7S1B8K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8K5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.050e-11 Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 1 Query: 13 LMVVALVQ-KCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGGGFY-----NKRDTGWFNESHPFRLSMQNPHETTVDTG 264 LM+V+ +Q +C +A K R NLG LL EF + YGN NY VG+ V GG Y +R ++ PF L+++NP E VD G Sbjct: 158 LMIVSFLQHRCREDAATKRRCSAYNLGCLLIEFLELYGNDFNYVTVGISVRNGGCYFAKGDRRRREHFWQPGRPFSLALENPLEPNVDAG 247 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10885.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10885.602.1 >prot_E-siliculosus-1a_F_contig10885.602.1 ID=prot_E-siliculosus-1a_F_contig10885.602.1|Name=mRNA_E-siliculosus-1a_F_contig10885.602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp MVVALVQKCGREAREKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGVCVWGback to top mRNA from alignment at E-siliculosus-1a_F_contig10885:127..808+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10885.602.1 ID=mRNA_E-siliculosus-1a_F_contig10885.602.1|Name=mRNA_E-siliculosus-1a_F_contig10885.602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10885:127..808+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10885:127..808+ >mRNA_E-siliculosus-1a_F_contig10885.602.1 ID=mRNA_E-siliculosus-1a_F_contig10885.602.1|Name=mRNA_E-siliculosus-1a_F_contig10885.602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10885:127..808+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |