mRNA_E-siliculosus-1a_F_contig1085.588.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE) HSP 1 Score: 1197 bits (3097), Expect = 0.000e+0 Identity = 828/954 (86.79%), Postives = 837/954 (87.74%), Query Frame = 3 Query: 237 MSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGGREDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLXXXXXXXXT---GLSIAAXXXXXXXXXXXXXPAPAPEGGGPEDQQPAAEVAVATESVGVSTDPLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDIVSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGGXXXSKAEADGATKGTTPREAPXXXXXXXXXXXXXVSSFQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQEKLGLPMSGQVGALGPPAAPPAVGIDVTPPPARSSPSLGHRGGGSQAPAEDLGLGSPTTGQLGRQASQMEEGILPPVAANQPSHLQQASPQQQQHQVDQAAFPKRERRPRPQSSSRGPAPSAGGIPPPSSTGNHATSQQPRHGQSELGSPPLRHLQQQQLLRSPFPQQPTPPLTPVQMGXXXXXXXXXXXXXXXXXXPGPNLPGPSRGSPNVTYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSYRPPMHPSPSHVPRSHIGGRXXXXXXXXXXXGAPWSEAPLVMPPYPAAAGVPSSHLPGMVNGAMRHNXXXXXXXXXXXXQEELPGGFSLTPADYVRNAPHASKDTAATGGGPATAPVHTAPSTATAPPGQQWVNSAGPLVPSPXXXXXXXXXPADGQGVGPASAVDLERGMTSPWQGPGDAEGDAATAAVATTVGVAPPPGLTGVGRAPEAVGAGAVSGGGGGVLG 3089
MSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGG+EDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLL XXXXXX GLS XXXXXXXXXXXXX GGGP+DQQPAAEVAV TESVGVSTDP ATEEAEVQTDV GPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGI KGRKEAATGLSKVLRLLH ASRFEAKG+RLPTAVDFFSK+LLGKT+PPDEADFDDCL QSVERASLYLDPSNGSKEVAPGVSYATLDD+VSTLRSQIIAGPAA AEGDSAAFNFFGEPSSG SKAEADGA KGTTPREAP XXXXXXXXXXXXVSSFQPP XXXXXXXX KLGLPMSGQVG LGPPAAPP VGIDVTPPPARSSPSLGHRGGGSQ PAEDLGLGSPTTGQLGRQASQMEEGILPPVAANQPSHLQQASPQQQ HQVDQAAFPKRERRPRPQSSSRGP PSAGGIPPPS TGNHATSQQPRH SELGSPPLRH QQQQLLRSPFPQQPTPPLTPVQMG XXXXXXPGPNLPGPSRGS N+TYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX XXXXXXXXXXXXXXX SYRPPMHPSPSH PRSHIGG XXXXXXX G PWSEAPL MPPYPAAAGVPSSH GMVNGAMRHNXXXXXX QEELPGGF+LTPADYVRNAPHASKDTAATGGGPATAPVHTAPSTATAP GQQWVNS+GPLVPS XXXXXXXXX VGPASAVDLERGMTSPWQGPGDAEGDA TAAVATTVGVAPPPGLTGVGRAPEAVGAGAVSGGGGGVLG
Sbjct: 1 MSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGGKEDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLAPXXXXXXXXXXGLSXXXXXXXXXXXXXXXXXXXXXXGGGPQDQQPAAEVAVETESVGVSTDPPATEEAEVQTDVKGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIVKGRKEAATGLSKVLRLLHAASRFEAKGQRLPTAVDFFSKVLLGKTVPPDEADFDDCLAQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAATAEGDSAAFNFFGEPSSGCGSSSKAEADGAAKGTTPREAPPXXXXXXXXXXXXVSSFQPPAAEARGGEELSGYQLQQQRPPKSPATSARSPIKXXXXXXXXXXXKLGLPMSGQVGPLGPPAAPPVVGIDVTPPPARSSPSLGHRGGGSQRPAEDLGLGSPTTGQLGRQASQMEEGILPPVAANQPSHLQQASPQQQ-HQVDQAAFPKRERRPRPQSSSRGPGPSAGGIPPPS-TGNHATSQQPRHRHSELGSPPLRH-QQQQLLRSPFPQQPTPPLTPVQMGMVHGLGLSAAAPXXXXXXPGPNLPGPSRGSSNLTYGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHXXXXXHQXXXXXXXXXXXXXXX-SYRPPMHPSPSHAPRSHIGGXXXXXXXXG---GPPWSEAPLAMPPYPAAAGVPSSHQTGMVNGAMRHNXXXXXXAADPA-QEELPGGFNLTPADYVRNAPHASKDTAATGGGPATAPVHTAPSTATAPSGQQWVNSSGPLVPSXXXXXXXXXXXXXXXXVGPASAVDLERGMTSPWQGPGDAEGDAVTAAVATTVGVAPPPGLTGVGRAPEAVGAGAVSGGGGGVLG 946
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: D7G7T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T6_ECTSI) HSP 1 Score: 668 bits (1723), Expect = 4.480e-229 Identity = 411/428 (96.03%), Postives = 415/428 (96.96%), Query Frame = 3 Query: 177 SARFSGHTEERET*ESRGCEMSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGGREDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLXXXXXXXX-TGLSIAAXXXXXXXXXXXXXPAPAPEGGGPEDQQPAAEVAVATESVGVSTDPLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDIVSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGGXXXSKAEADGATKGTTPREAPXXXXXXXXXXXXXVSSFQPP 1457
SARFSGHTEERET ESRGCEMSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGG+EDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEERE AEKAKLLL XXXXXX TGLSIAAXXXXXXXXXXXXXPAP PEGGGP+DQQPAAEVAVATESVGVSTD LATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSK+LLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDD+VSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGG SKAEADGA KGTTPREAP XXXXXXXXXXX VSSFQPP
Sbjct: 26 SARFSGHTEERETWESRGCEMSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGGKEDDATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEERETAEKAKLLLAPXXXXXXXTGLSIAAXXXXXXXXXXXXXPAPGPEGGGPQDQQPAAEVAVATESVGVSTDLLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKVLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDMVSTLRSQIIAGPAAAAEGDSAAFNFFGEPSSGGGSSSKAEADGAAKGTTPREAPPXXXXXXXXXXXNVSSFQPP 453
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: A0A835YXI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.820e-12 Identity = 119/307 (38.76%), Postives = 159/307 (51.79%), Query Frame = 3 Query: 369 ATTSNPYLAGLSKKARGLKKKMEKIKKTEALSASGKHLNEEQLKLLETKPLLEFALSEHERVKAAMEAVAKDVEEREAAEKAKLLLXXXXXXXXTGLSIAAXXXXXXXXXXXXXPAPAPEGGGPEDQQPAAEVAVATESVGVSTDPLATEEAEVQTDVSGPPPRPGLDPREVSEAVAVAATLAAQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPP--DEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDIVSTLRSQIIAGPAAAA 1283
A+++NPY+ +SKK R L+KK EKI+KTE +ASGK L++EQ++L+ TK L+E ++ EH + A +E VAK E AAE K XXXXXXXX XXXXXXXXXXXXX P E PA EVA AT +T + T A VQT P PR VS A A +A + A K+LRLLH S + LP V F ++ G+ PP +EADF++ + + + A Y+ + G E GV+Y L+ +V L ++ PAAAA
Sbjct: 23 ASSTNPYIMVVSKKLRALRKKGEKIRKTEEQAASGKQLHDEQVELIMTKELVERSVLEHSTILAMLEEVAKG--EAAAAEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGEA---LPLMPA-EVADAT----TNTAAVGTAAASVQTAPQQEPAAALSKPRGVSSAQQTVAVP----------DAAQXXXXXXXXXXADVTRKLLRLLHAWS-WAGGAHALPVPVRLFCDVIFGRARPPPPEEADFEEIVHANTKHALRYVTQAQG--EFGAGVTYVQLEAMVEELCTKFSPAPAAAA 306
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: A0A2D4CG95_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG95_PYTIN) HSP 1 Score: 61.2 bits (147), Expect = 1.480e-6 Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 3 Query: 1005 VLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGS-----KEVAPGVSYATLDDIVS 1241
+LR LH + +A G+ +P +D+FSK+LLGKT PP E F+D L +S+E A YL S+ + E P +++ T IVS
Sbjct: 125 LLRTLHAVTLHQALGKDVPMVLDYFSKVLLGKTRPPAEVSFEDNLAESMEEAKRYLSCSDKAVDAVEAEKGPEINFFTDSHIVS 208
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: A0A8K1CFN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFN4_PYTOL) HSP 1 Score: 63.2 bits (152), Expect = 1.690e-6 Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 996 LSKVLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDIVSTLRSQI 1259
+ ++L+ LH + +A G+ +P +D+FSK+LLGKT P E F++ L +S+E A YL+PS+ K VA +SY L IV L + +
Sbjct: 176 VEELLKTLHAVTLHQALGKEIPMVLDYFSKVLLGKTRLPVEVAFEENLAESLEEAKRYLEPSD--KVVACDMSYRDLRAIVDQLAAPL 261
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Match: A0A484EBL5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBL5_BRELC) HSP 1 Score: 58.2 bits (139), Expect = 7.010e-5 Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 918 AQEKEKAAQEAEERGIAKGRKEAATGLSKVLRLLHVASRFEAKGERLPTAVDFFSKMLLGKTMPPDEADFDDCLGQSVERASLYLDPSNGSKEVAPGVSYATLDDIVSTLRS 1253
A E EK QE +E + ++ T + ++L+ LHV + + + +P +DFFSK+LLGKT PP E +D+ L +S+E A YL S+ K A +Y L V S
Sbjct: 169 AAESEKETQELQEEVASAVKETDYTDVYELLKTLHVVNLHQVLNKEVPMVLDFFSKVLLGKTRPPAELSYDENLMESLEEAKKYLMKSD--KTFACDTTYCELKAFVDKFAS 278 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1085.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1085.588.1 >prot_E-siliculosus-1a_F_contig1085.588.1 ID=prot_E-siliculosus-1a_F_contig1085.588.1|Name=mRNA_E-siliculosus-1a_F_contig1085.588.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=951bp MSPSPDTQDSNRSNSIMASSGAPQQLVAQRAFADTSMRGGREDDATTSNPback to top mRNA from alignment at E-siliculosus-1a_F_contig1085:9701..14477+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1085.588.1 ID=mRNA_E-siliculosus-1a_F_contig1085.588.1|Name=mRNA_E-siliculosus-1a_F_contig1085.588.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4777bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:9701..14477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1085:9701..14477+ >mRNA_E-siliculosus-1a_F_contig1085.588.1 ID=mRNA_E-siliculosus-1a_F_contig1085.588.1|Name=mRNA_E-siliculosus-1a_F_contig1085.588.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5706bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:9701..14477+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |