mRNA_E-siliculosus-1a_F_contig1084.583.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI) HSP 1 Score: 513 bits (1322), Expect = 1.540e-175 Identity = 482/517 (93.23%), Postives = 483/517 (93.42%), Query Frame = 1 Query: 1 MILPWSLLLLVYSTVVEGVHPCLESDSGRCTFGTTDVDLRYCGLGDEDFEDLSRCLDTAGRSTITEVNLDDNDFVDFPEGLLADLSAVTYIRINHLPYLTEVPEGLFENLATLEKISLRDNALVTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLYENQVDLSEPSVLALPPTLFRDTQNLEELWIHTNNIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLYQTESDIGLPPALFRDNENLEILWLHKNGCGEVDEXXXXXXXKLQFLRLTFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTSIVEIDVTENPDLLCVPPSPAGEILRDSSASQDESCAGTETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRPG 1551 MILPWSLLLLVYSTV EGVHPCLESDSGRCTFGTTDVD+RYCGLGDEDFEDLSRCLDTAGRSTITEVNLDDNDFVDFPEGL A LSAVTYIRINHLPYLTEVPEGLFENLATLEKISLRDNALVTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LY YENQVDLSEPSVLALPPTLFRDTQNLEELWIHTNNIV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLYQTESDIGLPPA XXXXXXXKLQFLRLTFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTSIVEIDVTENPDLLCVPPSPAGEILRDS ASQDESC GTETCSNGLEGIDGNGVVCCPL CGQCGGKGCY SGSANGL GDSCCGGGIKASDEYCDETNEAPCIIGSRPG Sbjct: 1 MILPWSLLLLVYSTVAEGVHPCLESDSGRCTFGTTDVDVRYCGLGDEDFEDLSRCLDTAGRSTITEVNLDDNDFVDFPEGLFAGLSAVTYIRINHLPYLTEVPEGLFENLATLEKISLRDNALVTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELYFYENQVDLSEPSVLALPPTLFRDTQNLEELWIHTNNIVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLYQTESDIGLPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLQFLRLTFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTSIVEIDVTENPDLLCVPPSPAGEILRDSIASQDESC-GTETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCIIGSRPG 516
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.510e-64 Identity = 196/303 (64.69%), Postives = 202/303 (66.67%), Query Frame = 1 Query: 874 YLYQTESDIGLPPALFRDNENLEILWLHKNGCGEVDEXXXXXXXKLQFLRLTFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTSIVEIDVTENPDLLCVPPSPAGEILRDSSASQDESCA--------------------------------------------------------------------------GTETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRPGETM 1560 YLY+TESD GLPPAL R+N+NLEILWL+K GCGEVDE KL+FLRLTFN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IVEIDV ENPDLLCV P PAGEILRDSSASQDESCA G ETCSNGLEGIDG+G VCC L CGQCGGKGCY SGSANGLGGD CC GGIKASDEYCDETNEAPCIIGSRPG M Sbjct: 10 YLYETESDTGLPPALLRENKNLEILWLNKIGCGEVDEDLFSGLSKLRFLRLTFNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEIDVAENPDLLCVAPGPAGEILRDSSASQDESCAVERRVAVSVHNLLISDMGSNLYVESNGSLARPSSLTKRHGSRSQSWRLMEDLTAVFCITGLLKCVAPYPLHAQAGAETCSNGLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGSRPGAKM 312
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: A0A6H5L6F5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F5_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.200e-55 Identity = 218/270 (80.74%), Postives = 224/270 (82.96%), Query Frame = 1 Query: 583 VDLSEPSVLALPPTLFRDTQNLEELWIHTNNIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYLYQTESDIGLPPALFRDNENLEILWLHKNGCGEVDEXXXXXXXKLQFLRLTFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTSIVEIDVTENPDLLCVPPSPAGEILRDSSASQDESCAGTETCSNGLEGIDGNGVVCC 1392 VDLSEPSVLALPPTLFRDTQNLEELWIHTNNIV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LYLY+TESDI LPPALFR+N+NLEILWL+KNGCG+VDE K QFLRLTF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IVEIDV ENPDLLCV PSPAGEILRDSSASQDESC G ETCSNGLEGIDG+G VCC Sbjct: 2 VDLSEPSVLALPPTLFRDTQNLEELWIHTNNIVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXET------------------------LYLYETESDIDLPPALFRENKNLEILWLNKNGCGDVDENLFSGLSKXQFLRLTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEIDVAENPDLLCVAPSPAGEILRDSSASQDESC-GAETCSNGLEGIDGSGGVCC 246
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 135 bits (339), Expect = 3.980e-31 Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1 Query: 1336 TETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 +ETCSNG+EGIDGNGVVCCPLGCGQCGG GC SG+A GLG DSCCGG IKASDEYCDETNEAPCIIGSRP Sbjct: 344 SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRP 414
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 125 bits (315), Expect = 4.640e-27 Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 1300 DSSASQDESCAGTETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 DS+ D + ETCSNGLEGI+GNGVVCCPL C QCGG GC SGSA GLG +SCCGGGIKAS YCD+TNEAPCIIGSRP Sbjct: 457 DSTTDDDFTTDEVETCSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRP 539
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.150e-26 Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1 Query: 1321 ESCAGTETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 ES T+TCS+G EGIDGNGVVCCP+GCGQC G GC +GSANGLG +SCCGGG+K+ YCD+TNEAPCIIGSRP Sbjct: 330 ESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRP 405
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI) HSP 1 Score: 111 bits (277), Expect = 2.830e-24 Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 Query: 1345 CSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRPGETMRSWI 1572 C+NG+EGIDGNGVVCCPL CGQCGG+GC SG+ GLG +SCCGGG+K+++ YCD T +APCI GS P E + + + Sbjct: 95 CNNGIEGIDGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPEEALLTTV 170
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.210e-23 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1 Query: 1339 ETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 +T +G EGIDGNGVVCCP+GCGQCGG GC +GSANGLG +SCCGGG+K+ YCD+TNEAPCIIGS P Sbjct: 571 DTQIDGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAP 640
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.280e-22 Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1 Query: 1330 AGTETCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 A TCSNG++GIDGNG+VCCP+ C QCGG GC +G A GLG +SCCG G+KAS YCD+T+EAPCIIGS P Sbjct: 522 ASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGSSP 594
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.620e-22 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 Query: 1342 TCSNGLEGIDGNGVVCCPLGCGQCGGKGCYKSGSANGLGGDSCCGGGIKASDEYCDETNEAPCIIGSRP 1548 TCS+G+EGIDGNGVVCCPLGCGQC G GC +G+ANGL SCCGGGIK+S YCD+T APCI GS P Sbjct: 534 TCSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAP 602 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1084.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1084.583.1 >prot_E-siliculosus-1a_F_contig1084.583.1 ID=prot_E-siliculosus-1a_F_contig1084.583.1|Name=mRNA_E-siliculosus-1a_F_contig1084.583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=526bp MILPWSLLLLVYSTVVEGVHPCLESDSGRCTFGTTDVDLRYCGLGDEDFEback to top mRNA from alignment at E-siliculosus-1a_F_contig1084:7014..20729+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1084.583.1 ID=mRNA_E-siliculosus-1a_F_contig1084.583.1|Name=mRNA_E-siliculosus-1a_F_contig1084.583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13716bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1084:7014..20729+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1084:7014..20729+ >mRNA_E-siliculosus-1a_F_contig1084.583.1 ID=mRNA_E-siliculosus-1a_F_contig1084.583.1|Name=mRNA_E-siliculosus-1a_F_contig1084.583.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1084:7014..20729+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |