mRNA_E-siliculosus-1a_F_contig1081.569.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1081.569.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI) HSP 1 Score: 1133 bits (2930), Expect = 0.000e+0 Identity = 893/1110 (80.45%), Postives = 909/1110 (81.89%), Query Frame = 2 Query: 191 ITPPAETSRRSRAEPALSVAIPPREPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHANSDPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKIAANDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GAEVGLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDGSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVGANKRGGRRRGGAAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKSGGGEG-VVLEELELAGNALTLSASQAAAQAKTSSLYKSAGGALSSLLTTFVDESYYSGNSNNNRGSGQDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQGARGXXXXXXXXXXXXXXXXCSSLKAVGLARTGLTERDAARLAAALRSRPVDSPLKEVEVGLNGLSAKAAEAVRLAVESPTAPHDRSSSFDDDLENSGGRGRQRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSARRSEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLDSSAAGRGKPGRRNPASRRNFNVRGXXXXXXXXXXEPPTKIPGRRLRSSRDAGGADDGEWAAGFETVSAKEPEADCENGVDGSGAAKVEWEDGFRESRTEQGAEDSEDDEWAAGFEAVSEEAESDCEXXXXXXXXXSAEVEWEDGFRESRTE-GAEDXXXXXXXXXXXXXXEEAELNCESAMGGDGGESAEVEWEDGFREPSESRTE-GAEDSDDXXXXXXXXLASAKEAESGCESAMGSGGAXXXXXXXXXXXRKSRREQGAEDG 3499
+TPPAE+ RSRAEP+L+VAIPP EPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRH N++PPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG YLSSALLKSAAAAKIAANDDA XXXXXXXXXXXXXXXX GAEV LPPPVASGIRRLLLTGNDRLGDAGAKALASALKKD SLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVG N RGGRR GA+KQG SSRRGPGLRS XXXXXXXXXXXXXXXXXXXXXX GEG VVLEELELAGNALTLSASQAAAQAK+SSLYKSAGGALSSLLTTFVDESYY GNSNN RGS QDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQGARGXXXXXXXXXXXX C SLKAVGLARTGLTERDAARLAAALR+RPVDSPL+EVEVGLNGLS KAAEA+RLAVESPTAPHDRSSSF DDLE +GGRGR XXXXXXX RSAR +EVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX GLDSSAAGRGKPG RNPASRRNFNVRGXXXXXXXXX EPPTKIPGRR RSSRDAGGADDGEWAAGFETVSA+E EAD ENG WAAGFEAVSEEAESDCE SAEVEWEDGFRESRTE GAED EEAE +CESAMGG G SAEVEWEDGFRE SRTE XXXXXXX LASAKEAES CESAMGSG XXXXXXX R+SRREQGAE G
Sbjct: 1 MTPPAESGSRSRAEPSLAVAIPPHEPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHPNTNPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDDANSPASEAPTTAGXXXXXXXXXXXXXXXXXKKGGAEVVLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDNSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVGGNNRGGRRXXGASKQGISSRRGPGLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGVVLEELELAGNALTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYGGNSNN-RGSVQDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQGARGXXXXXXXXXXXXG---CPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPHDRSSSFVDDLEKNGGRGRXXXXXXXXXXRHDPAAPGVDEPGLRSRRGTATAAPAEE-----RSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGHEGGHDDSRGGRGPAVLGSDDPENASISSAXXXXXXXXXXXXXXXXXXXXXX-GLDSSAAGRGKPGLRNPASRRNFNVRGXXXXXXXXX-EPPTKIPGRRTRSSRDAGGADDGEWAAGFETVSAEETEADPENGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAAGFEAVSEEAESDCESAMGGGGAASAEVEWEDGFRESRTEQGAEDSDDGEWAAGFEAVSEEAESDCESAMGGGGAASAEVEWEDGFRE---SRTEQXXXXXXXXXXXXXXELASAKEAESDCESAMGSGXXXXXXXXXKAGFRESRREQGAEXG 1094
BLAST of mRNA_E-siliculosus-1a_F_contig1081.569.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE) HSP 1 Score: 641 bits (1653), Expect = 3.710e-212 Identity = 444/495 (89.70%), Postives = 460/495 (92.93%), Query Frame = 2 Query: 32 MASKVWGLHGGGVKLLTSLLLALSTPQAIHCGTSAGSTAHHDRLATAATPAEDITPPAETSRRSRAEPALSVAIPPREPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHANSDPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKIAANDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEVGLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDGSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVGANKRGGRRRGGAAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKSGGGEGVVLEELELAGNALTLSASQAAAQAK 1516
MASK L+GGG+KLLTS+LLA+STP+AIHCGTSAGST+HHDRLATAA P D+TPPA+TS RSRAEPALS+AIPPREP TGN PLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQ HR+ +++ PPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSA DSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKI+ANDD XXXXXXXXXXXXXXXXXXXXXX GAE GLPPP ASGIRRLLLTGNDR+GDAGAKALASALKKD SLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HAGSSALECLELQGNHVGDAGAVALADGLVG +KRGGR AKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXK G GVVLEELELAGNALTLSASQAAAQAK
Sbjct: 1 MASKASVLNGGGLKLLTSVLLAISTPRAIHCGTSAGSTSHHDRLATAAAPPGDMTPPADTSSRSRAEPALSIAIPPREPVTGNTPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQHHRYPDTNSPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDDPNNSAXXXXXXXXXXXXXXXXXXXXXXKGGAEFGLPPPAASGIRRLLLTGNDRIGDAGAKALASALKKDSSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHAGSSALECLELQGNHVGDAGAVALADGLVGGSKRGGRXXXXXAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKGGXXGGVVLEELELAGNALTLSASQAAAQAK 495
BLAST of mRNA_E-siliculosus-1a_F_contig1081.569.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.320e-32 Identity = 158/323 (48.92%), Postives = 187/323 (57.89%), Query Frame = 2 Query: 296 QMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHANSDPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKIAANDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAEVGLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDGSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGL 1264
Q +D SFS +GP G + +G+ E + PS L L+ECSLGD G +V S V GV LSLR N + G R+LL LR+A D RL L LDFN IGDAG QPLPA LK+ + G LE LSLRFC I AGCR ++SAL K A++ A+D GIR L L GN LGDAGAKALA+ALK++ +L+ LDLTRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+S+++ L+L NH+ D GA A A L
Sbjct: 53 QFIDLSFSHVGPVGASEV---LSGLSE---------ASAAPSGLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLRTAPD---RLQTLVLDFNLIGDAGLQPLPALLKDSS---NGRLESLSLRFCGISAAGCRSIASALSK----AQVNASD-----------------------------------------RGIRHLSLAGNP-LGDAGAKALAAALKQNVALEELDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDGASSIQRLDLDHNHIADGGAFAFARAL 311 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1081.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1081.569.1 >prot_E-siliculosus-1a_F_contig1081.569.1 ID=prot_E-siliculosus-1a_F_contig1081.569.1|Name=mRNA_E-siliculosus-1a_F_contig1081.569.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1164bp MASKVWGLHGGGVKLLTSLLLALSTPQAIHCGTSAGSTAHHDRLATAATPback to top mRNA from alignment at E-siliculosus-1a_F_contig1081:15956..26036+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1081.569.1 ID=mRNA_E-siliculosus-1a_F_contig1081.569.1|Name=mRNA_E-siliculosus-1a_F_contig1081.569.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10081bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:15956..26036+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1081:15956..26036+ >mRNA_E-siliculosus-1a_F_contig1081.569.1 ID=mRNA_E-siliculosus-1a_F_contig1081.569.1|Name=mRNA_E-siliculosus-1a_F_contig1081.569.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:15956..26036+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |