mRNA_E-siliculosus-1a_F_contig10803.565.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 181 bits (459), Expect = 6.400e-51 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 Query: 1 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV Sbjct: 568 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 665
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.110e-47 Identity = 88/98 (89.80%), Postives = 88/98 (89.80%), Query Frame = 1 Query: 1 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSAS XXXXXX RG AVGGP PGFYDLGMMAMSSWKNTFIVGIHPEV Sbjct: 545 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASPSPSLSSXXXXXXRRGVAVGGPGPGFYDLGMMAMSSWKNTFIVGIHPEV 642
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A835YZH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.420e-14 Identity = 48/102 (47.06%), Postives = 57/102 (55.88%), Query Frame = 1 Query: 1 ADVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGP----APGFYDLGMMAMSSWKNTFIVGIHPEV 294 AD GVV+K+ FRRVMWT WV +T CLLDGAAG + ++ VL W SS GGA P AP F +MAMSS NTF+V I P+V Sbjct: 1252 ADAAGVVNKVAFRRVMWTAWVAETACLLDGAAGCMLSVDVLRGWAGVFSSAVPSVEEQGA----GGAARPPEDAVAP-FEATRLMAMSSATNTFVVSIDPQV 1348
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A7S4HPF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPF7_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.900e-7 Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 4 DVEGVVSKMCFRRVM-WTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGG--AVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 D G+V+K+ F +VM + + VDTECLLDG AG I A+ VLP + S + GG ++ G P L ++A+SS +++F V + P+V Sbjct: 195 DAGGLVNKLTFSKVMLFNAYSVDTECLLDGTAGQILAMHVLPPF-----SSVKLPPPPAGSQITGGDSSLAGYHPSIRRLSLIALSSERSSFAVAVEPQV 289
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A1Z5K8H4_FISSO (Vps8 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8H4_FISSO) HSP 1 Score: 52.4 bits (124), Expect = 1.100e-5 Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 4 DVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 DV G+V+K+ F + ++W+ + VDTECLLDG AG I A+ VLP + LR L ++A+SS +++F V + P++ Sbjct: 430 DVGGIVNKISFTKNMLWSNYSVDTECLLDGTAGQILAMNVLPPY--GTIKTQQLRPDPLTDMLR------------KLTLIALSSERSSFAVAVEPQI 513
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A7S4ALZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALZ4_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 2.750e-5 Identity = 33/101 (32.67%), Postives = 50/101 (49.50%), Query Frame = 1 Query: 1 ADVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWT--DSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 AD G+V+K+ F + ++W+ + V+TECLLDG AG I A+ VLP + GA L ++A+SS +N+F V + P V Sbjct: 3 ADASGLVNKLNFSKNMLWSTYGVETECLLDGTAGQILAVDVLPPYEYIKQQLQLQQNQQQNKANPSSEGAAKKLRSTMKKLVLIALSSERNSFAVAVEPTV 103
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A7S1TXF0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXF0_9STRA) HSP 1 Score: 48.9 bits (115), Expect = 3.600e-5 Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 1 Query: 4 DVEGVVSKMCFRRVMWTKWVVDTECLLDGAAGPIPALCVL 123 D G V+++ F + ++ W ++ECLLDGAAGPIP L +L Sbjct: 73 DTRGCVNRITFTKSLFATWAHESECLLDGAAGPIPMLALL 112
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Match: A0A1E7FY24_9STRA (Vps8 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY24_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 3.810e-5 Identity = 34/105 (32.38%), Postives = 53/105 (50.48%), Query Frame = 1 Query: 4 DVEGVVSKMCF-RRVMWTKWVVDTECLLDGAAGPIPALCVLPTWT-------DSASSXXXXXXXXXXXXLRGGAVGGPAPGFYDLGMMAMSSWKNTFIVGIHPEV 294 D G+V+K+ F + ++W+ + V++ECLLDG AG I AL VLP + AS+ LR L ++A+SS +N+F+V + P V Sbjct: 311 DAGGLVNKLNFSKNMLWSTYSVESECLLDGTAGQILALNVLPPYQYVKQQLIQQASNNGNTAAAVQTKSLRSTMK--------KLVLIALSSERNSFVVAVEPSV 407 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10803.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10803.565.1 >prot_E-siliculosus-1a_F_contig10803.565.1 ID=prot_E-siliculosus-1a_F_contig10803.565.1|Name=mRNA_E-siliculosus-1a_F_contig10803.565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=89bp MCFRRVMWTKWVVDTECLLDGAAGPIPALCVLPTWTDSASSSPSSSSFGGback to top mRNA from alignment at E-siliculosus-1a_F_contig10803:41..898+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10803.565.1 ID=mRNA_E-siliculosus-1a_F_contig10803.565.1|Name=mRNA_E-siliculosus-1a_F_contig10803.565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10803:41..898+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10803:41..898+ >mRNA_E-siliculosus-1a_F_contig10803.565.1 ID=mRNA_E-siliculosus-1a_F_contig10803.565.1|Name=mRNA_E-siliculosus-1a_F_contig10803.565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10803:41..898+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |