mRNA_E-siliculosus-1a_F_contig1079.551.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: D7FU66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU66_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.830e-27 Identity = 65/84 (77.38%), Postives = 66/84 (78.57%), Query Frame = 1 Query: 1 MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGPQGASFSRACGPDSVYTRTTTPGAETIL 252
MRTSS SARDG LAREEG GSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG + SVYTRTT P AETIL
Sbjct: 1 MRTSS-GSARDGGLAREEGTGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGSKAYHALERAAQASVYTRTTAPAAETIL 83
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: A0A6H5LE70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE70_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.690e-16 Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 10 SSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG 168
SSDSSARDG LAREEGRGSMGGSSR GSSARTLAAGLALTLAACSTPAYG
Sbjct: 3 SSDSSARDGGLAREEGRGSMGGSSRXXXXGSSARTLAAGLALTLAACSTPAYG 55 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1079.551.1 >prot_E-siliculosus-1a_F_contig1079.551.1 ID=prot_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACback to top mRNA from alignment at E-siliculosus-1a_F_contig1079:13625..14318- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=694bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1079:13625..14318- >mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |