mRNA_E-siliculosus-1a_F_contig10661.473.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5KZL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL3_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.960e-52 Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 3 Query: 3 SLTSATMKLKEGLEQAAGAATGTAGKKTPAKGKKAAAGAAAKENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAHYIVGTVSGSKPAATPPDPTPIRRSKKAPSKS 341
SLTSAT KLKEGLEQAAGAATGTAGKKTPAKGKKA AGAA KENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMA YIV TVSGS+PAATPPDPTPIRRSKKAPSKS
Sbjct: 309 SLTSATTKLKEGLEQAAGAATGTAGKKTPAKGKKATAGAADKENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAQYIVRTVSGSQPAATPPDPTPIRRSKKAPSKS 421
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5JFF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF5_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.170e-42 Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 2 Query: 221 RTSTDGHGPLHRWDCFRLKTGCDAPGPDTHPALQEGAVEVVEEQEAQRGPITVTVFHRPVVFLERRRDALSSQETEAGPPE 463
RTSTDGHGP+HR DCFRL TGCDAPGPDTHP LQEGAVEVVEEQEAQ+GPITVTVFH+PVVFLERRRDALSSQ TEAGPPE
Sbjct: 27 RTSTDGHGPVHRSDCFRLTTGCDAPGPDTHPPLQEGAVEVVEEQEAQKGPITVTVFHQPVVFLERRRDALSSQGTEAGPPE 107
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.610e-38 Identity = 94/128 (73.44%), Postives = 94/128 (73.44%), Query Frame = 1 Query: 271 AQNRLRRPRT-RHPSGAPRRRRRSRRGAR-----STERSHHRHRLPPTRRLPRATPRRPLLPRNRSGAAXXXXXWQRPT*TSXPSHRLPLNPCKRLPTHTTACPPAFMQHPAYHPRHQRRVSYPKTPA 636
A RLRRPRT RHPSGAPRRRR STERSHHR RLPPT LPRATPRRPLLPRNRSGA WQRPT S PSHRLPL PCKRLPTHTTA PPA MQHP HP QRRVSYPKTPA
Sbjct: 286 APPRLRRPRTGRHPSGAPRRRRXXXXXXXXXXXXSTERSHHRPRLPPTP-LPRATPRRPLLPRNRSGAVRGSSLWQRPTSISRPSHRLPLAPCKRLPTHTTARPPASMQHPPCHP-WQRRVSYPKTPA 411
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: D7G7X2_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X2_ECTSI) HSP 1 Score: 143 bits (360), Expect = 3.580e-37 Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 3 Query: 153 VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAHYIVGTVSGSKPAATPPDPTPIRRSKKAPSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPKKQTLAATDMNQQAVPPAAA 521
VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMA YIVGTVS +KPAATPPDPTPIRRSKKAPSKS XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXRGRP+KQTLAATD+NQQAVP AAA
Sbjct: 6 VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSXXXXXXEIPXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPRKQTLAATDINQQAVPRAAA 128 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10661.473.1 >prot_E-siliculosus-1a_F_contig10661.473.1 ID=prot_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp MKLKEGLEQAAGAATGTAGKKTPAKGKKAAAGAAAKENGSTPSKVTLDGTback to top mRNA from alignment at E-siliculosus-1a_F_contig10661:369..2252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10661.473.1 ID=mRNA_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10661:369..2252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10661:369..2252+ >mRNA_E-siliculosus-1a_F_contig10661.473.1 ID=mRNA_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10661:369..2252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |