mRNA_E-siliculosus-1a_F_contig1066.470.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1066.470.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 7.490e-154 Identity = 329/422 (77.96%), Postives = 346/422 (81.99%), Query Frame = 2 Query: 482 MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVGAGGGSAATVPAAGTLGKNKSSNIMINSNESGENQRKQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDYVDSMMLEEGFEGGGSAAISEDDLSYLADMDLADFLPAGGVEGASDAGTGGGGGAPLSPSSAHEIETLPNHMAGGGEVSAPVMTXXXXXXXXXXXXXXX-GGVIGSPVAGGGAEVSGVGDVSPVRSXXXXXXXXXXXXXXXEVVAAPGVNVDGGGAARRKGXXXXXXXXXXXXXXXXXXXXXXXXXTVSVKEQVRRQKVARYLAKKQRRRWSKASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRKRVLMAQMREKAAAATAXXXXXXXXXXXXXXXXGAPCGDGVPSSPEFGHQYTV 1744
MH+DETII+MYAPF ACSGAHRP++GTVDSS RKINAGGNNGNSEVGAGGGS ATVPAAGTL KNK+S I+I NESGEN KQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDY DSMMLEEG EG G AAISE+ L+YLADMDLADFLPAG +GAS+AGTG AP SPSS HEIE LP+ +AGG XXXXXXXXXXXXXXX GGV+GSPVAGGGAEVSGVGDVSP+RS EVVAAPGVN DG XXXXXXXXXXXXXX VS+KEQVRRQKVARYLAKKQRRRWSKAS YQSRQRVANSRPRHKGRFLPLESEFVPIAE+QRR+RVLMAQMREKAAAATAXXXXXXXXXXXXXXX GA GDGVP SPE GHQYTV
Sbjct: 1 MHDDETIINMYAPFRACSGAHRPLKGTVDSSRRKINAGGNNGNSEVGAGGGSTATVPAAGTLCKNKNS-IIITENESGEN--KQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDYGDSMMLEEGCEGEGGAAISEEGLAYLADMDLADFLPAGSAKGASNAGTGXXXXAPRSPSSDHEIEILPDIVAGGXXXXXXXXXXXXXXXXXXXXXXXXXGGVMGSPVAGGGAEVSGVGDVSPIRSVAAAAVAAV------EVVAAPGVNADGXXXXXXXXXXXXXXXXXXXXXXDWDGGDDDADAIVSLKEQVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAAATAXXXXXXXXXXXXXXXAGARYGDGVPLSPESGHQYTV 413
BLAST of mRNA_E-siliculosus-1a_F_contig1066.470.1 vs. uniprot
Match: D7G0D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D0_ECTSI) HSP 1 Score: 295 bits (756), Expect = 1.780e-90 Identity = 160/199 (80.40%), Postives = 165/199 (82.91%), Query Frame = 2 Query: 482 MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVGAGGGSAATVPAAGTLGKNKSSNIMINSNESGENQRKQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDYVDSMMLEEGFEGGGSAAISEDDLSYLADMDLADFLPAGGVEGASDAGTGGGGGAPLSPSSAHEIETLPNHMAGGGEVSA 1078
MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVG LGK ESGENQRKQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDY DSMMLEEG EGGG AAISE+DL+YLADMDLADFLPAG EGA +AGT GGGAPLSPSSAHEIETLP+H+AGGGE SA
Sbjct: 1 MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVGXXXXXXXXXXXXXXLGKXXXXXXXXXXXESGENQRKQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAGDDDYGDSMMLEEGCEGGGGAAISEEDLAYLADMDLADFLPAGAAEGAPEAGTSAGGGAPLSPSSAHEIETLPDHVAGGGEASA 199
BLAST of mRNA_E-siliculosus-1a_F_contig1066.470.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE) HSP 1 Score: 200 bits (508), Expect = 4.630e-53 Identity = 212/391 (54.22%), Postives = 233/391 (59.59%), Query Frame = 2 Query: 482 MHNDETIISMYAPFWACSGAHRPVE-GTVDS-SDRKINAGGNNGNSEVGAGGGSAATVPAAGTLGKNKSSNIMINSNESGENQRKQLDSMDVGLNVSG-EGDIADNVDGFLDEFIALAGDDDYVDSMMLEEGFEGGGSAAISEDDLSYLADMDLADFLPAGGVEGASDAGTGGGGGAPLSPSSAHEIETLPNHMAGGGEVSAPVMTXXXXXXXXXXXXXXXGGVIGSPVAGGGAEVSGVGDVSPVRSXXXXXXXXXXXXXXXEVVAAPGVNVDGGGAARRKGXXXXXXXXXXXXXXXXXXXXXXXXXT-VSVKEQVRRQKVARYLAKKQRRRWSK--ASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRKRVLMAQMREKAAAATA 1636
MH+DETI M+APFWA SGAHRPVE TV+ S RK N+ A + V G +GDIADNVDGFLDEF+ LAG +D + + AISE+DL +LADMDLADFLP A T G A LSPSS HE+ETLP+ GG V++PVMT AE + + P XXXXXXXXXXXXXXX V APGV DG GAAR XXXXXXXXXXXXXXXXXXXXXXXXX +S KEQVRRQKVARYLAKKQRR WSK ASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRR+R LM QMREKAAA+ A
Sbjct: 1 MHDDETI-GMHAPFWAFSGAHRPVEESTVNGGSGRKTNS----------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDVVVGGHDGDIADNVDGFLDEFMVLAGGNDDGNDYGMXXXXXXXXXPAISEEDLVFLADMDLADFLP--------PAITAEEGDALLSPSSVHEMETLPSQ---GGRVASPVMTAA-------------------------AEAT----LGPAXXXXXXXXXXXXXXXXXAV--APGVETDGRGAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISPKEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAASAA 332
BLAST of mRNA_E-siliculosus-1a_F_contig1066.470.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI) HSP 1 Score: 197 bits (500), Expect = 5.110e-52 Identity = 241/433 (55.66%), Postives = 258/433 (59.58%), Query Frame = 2 Query: 482 MHNDETIISMYAPFWACSGAHRPVE-GTVDSSD--RKINAGGNNGNSEVGAGGGSAATVPA-AGTLGKNKSSNIMINSNESGENQRKQLDSMDVGLNVSG-EGDIADNVDGFLDEFIALAGDDDYVDSMMLEEGFEGGGSAAISEDDLSYLADMDLADFLPAGGVEGASDAGTGGGGGAPLSPSSAHEIETLPNHMAGGGEVSAPVMTXXXXXXXXXXXXXXXGGVIGSPVAGGGAEVSGVGDVSPVRSXXXXXXXXXXXXXXXEVVAAPGVNVDGGGAARRKGXXXXXXXXXXXXXXXXXXXXXXXXXTVSVKEQVRRQKVARYLAKKQRRRWSK--ASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRKRVLMAQMREKAAAATAXXXXXXXXXXXXXXXXG-----APCGDGVPSSPEFGHQYTV 1744
MH+DETI +M+APFWA SGAHRPVE TVDSS RK N AGGG A AG G+ D + V+G EGDIADNVDGFLDEF+ALAG +D MMLE AISE+DL +LADMDLADFLP A T GGA LSPSS HE+ET+P+ GG VS XXXXXXXXXXXXXXX XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX +S+KEQVRRQKVARYLAKKQRR WSK ASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRR+R LM QMREKAAAA XXX XXXXXXX G AP G GVP EF Q T+
Sbjct: 1 MHDDETI-AMHAPFWAFSGAHRPVEESTVDSSSSGRKANN----------AGGGIANKYSIEAGXXXXXXXXXXXXXXXXPGKGSSGGRDVV-----VNGHEGDIADNVDGFLDEFMALAGGNDEDYGMMLEXXXXX--XPAISEEDLVFLADMDLADFLP--------PATTAEDGGALLSPSSVHEMETVPSE---GGGVSXXXXXXXXXXXXXXXXXXXX--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLKEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAAATAEXXXGPXXXXXXXARGTAAVGAPYGAGVPPPQEFSSQCTI 372 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1066.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1066.470.1 >prot_E-siliculosus-1a_F_contig1066.470.1 ID=prot_E-siliculosus-1a_F_contig1066.470.1|Name=mRNA_E-siliculosus-1a_F_contig1066.470.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=422bp MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVGAGGback to top mRNA from alignment at E-siliculosus-1a_F_contig1066:4816..9622+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1066.470.1 ID=mRNA_E-siliculosus-1a_F_contig1066.470.1|Name=mRNA_E-siliculosus-1a_F_contig1066.470.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4807bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:4816..9622+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1066:4816..9622+ >mRNA_E-siliculosus-1a_F_contig1066.470.1 ID=mRNA_E-siliculosus-1a_F_contig1066.470.1|Name=mRNA_E-siliculosus-1a_F_contig1066.470.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:4816..9622+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |