mRNA_E-siliculosus-1a_F_contig105.360.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: D8LSE4_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE4_ECTSI) HSP 1 Score: 298 bits (762), Expect = 8.950e-101 Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 1 Query: 79 MRPVLNLFFLFGSSVGFYANPMMRRVAVSSFAGSTIVRAASATALPSQRQAKFTTSMNSVDFVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 543
MRPVLNLFFLFGSSVGFYANPMMRRVAVSSFAGSTIVRAASATA PSQRQAKFTTSMNSVDFVEKEID NNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG
Sbjct: 1 MRPVLNLFFLFGSSVGFYANPMMRRVAVSSFAGSTIVRAASATAFPSQRQAKFTTSMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 155
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A835YTN8_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN8_9STRA) HSP 1 Score: 128 bits (321), Expect = 8.970e-34 Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 1 Query: 259 DFVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 543
DFV+++I ++VVFSKSYCP+C +TK LF L ATV ELDQ DDG IQA L TGQ TVPNVFVKGTHVGGNDA Q ANS G LK+L++G
Sbjct: 66 DFVKQQIASQDIVVFSKSYCPYCAKTKALFQSLDAGATVIELDQRDDGGDIQAALAEITGQRTVPNVFVKGTHVGGNDATQKANSDGTLKSLMNG 160
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A168RTQ5_ABSGL (Glutaredoxin domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168RTQ5_ABSGL) HSP 1 Score: 120 bits (301), Expect = 1.370e-31 Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 265 VEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 537
V+ I N VV+FSKSYCP+C+ TKNLF LGV+A V ELDQ+DDG AIQ L KTGQ TVPNVFV HVGGN VQAANS+G+L+ LL
Sbjct: 9 VDSLIKNNKVVIFSKSYCPYCSATKNLFKQLGVEAVVLELDQIDDGAAIQDYLQKKTGQRTVPNVFVAQQHVGGNSDVQAANSNGSLEKLL 99
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A1Z5KQE3_FISSO (Glutaredoxin 3 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQE3_FISSO) HSP 1 Score: 121 bits (303), Expect = 2.830e-31 Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 196 ASATALPSQRQAKFTT---SMNSVDFVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 537
A+A A+ +Q + + T + DF+ EI+ N V +FSKSYCPFC++TK FA LGVDA ++EL+QMDDG IQ L TGQ TVPNVFV G H+GGND Q A +SG +K LL
Sbjct: 30 AAANAIVTQPSSNYLTVRHMASKTDFITSEINSNQVTIFSKSYCPFCSKTKASFAELGVDAKIFELNQMDDGADIQDTLFEMTGQKTVPNVFVNGKHIGGNDDTQKAIASGEMKKLL 146
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A7S1CWF6_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWF6_9CHLO) HSP 1 Score: 120 bits (302), Expect = 3.350e-31 Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 265 VEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 540
V+ I +VVVFSKS+CPFC +TK LF LGVDA +YELDQ DDG IQA L TGQ+TVPNVF+KG H+GGND Q AN+SG L +L+
Sbjct: 50 VDDAIKAKDVVVFSKSFCPFCAKTKTLFRELGVDADIYELDQRDDGSEIQATLKEMTGQSTVPNVFIKGEHLGGNDDTQQANASGELAKMLE 141
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A1X2GSF3_9FUNG (Glutaredoxin n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSF3_9FUNG) HSP 1 Score: 119 bits (299), Expect = 3.480e-31 Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 265 VEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 540
VE+ I N +V+FSK+YCP+CT TK LF LG DAT+ ELD +DG AIQ L KTGQ TVPNVFVK H+GGND VQAAN +G LK LL+
Sbjct: 16 VEELIANNKIVIFSKTYCPYCTSTKTLFKKLGQDATIIELDTRNDGSAIQNYLLTKTGQRTVPNVFVKQQHIGGNDNVQAANGNGTLKKLLE 107
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A7S3NI43_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI43_9STRA) HSP 1 Score: 119 bits (299), Expect = 7.480e-31 Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1 Query: 265 VEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 537
++ I N+VV+FSKSYCPFC +TK LF L VDA +YELDQ DDG IQ+ L KTGQ+TVPNVF+KG H+GGND Q A++SG L LL
Sbjct: 43 IDDTIKANDVVIFSKSYCPFCAKTKALFQSLNVDADIYELDQRDDGAEIQSKLKEKTGQSTVPNVFIKGEHLGGNDDTQRAHASGKLAELL 133
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A7S2R353_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R353_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.060e-30 Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1 Query: 259 DFVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 540
DFV++EI N+VVVFSKS+CPFC +TK+L G+ +D T EL+QMDDG IQ L +GQ TVPNVFVKG H+GGND Q A SGALKT+L+
Sbjct: 65 DFVKQEIANNDVVVFSKSFCPFCKKTKSLLDGMDIDYTALELNQMDDGADIQDALMDLSGQRTVPNVFVKGNHLGGNDDAQKAAKSGALKTMLE 158
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A1Z5KSJ8_FISSO (Glutaredoxin 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSJ8_FISSO) HSP 1 Score: 118 bits (295), Expect = 1.100e-30 Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1 Query: 259 DFVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 537
DF++KE D + VVV+SKSYCP+CT TKNLF L V V+ELDQM +G IQA L TGQ TVPNVF+KG H+GGND QAA+ SG L+ LL
Sbjct: 6 DFIQKEHDASPVVVWSKSYCPYCTATKNLFQKLNVPHKVHELDQMSNGNDIQAALQQMTGQRTVPNVFIKGKHLGGNDDTQAAHRSGHLQQLL 98
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Match: A0A7S2L780_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L780_9STRA) HSP 1 Score: 117 bits (294), Expect = 9.400e-30 Identity = 72/131 (54.96%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 154 VAVSSFAGSTIVRAASATALPSQRQAKFTTSMNSVD---FVEKEIDGNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 537
VA S ST VR S T + + SM+S D FV EI N+VVVFSK+YCPFCT TK LF L VDA V ELD +D+G IQ L KTGQ TVP+VF+KG H+GGNDA QAA SG L T L
Sbjct: 24 VASGSNKPSTFVRNVSGTV--GSASSTTSLSMSSTDSAAFVLAEIGSNDVVVFSKTYCPFCTSTKTLFEKLNVDAKVVELDTLDNGADIQGALLDKTGQRTVPSVFIKGEHIGGNDATQAAFQSGDLFTKL 152 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.360.1 >prot_E-siliculosus-1a_F_contig105.360.1 ID=prot_E-siliculosus-1a_F_contig105.360.1|Name=mRNA_E-siliculosus-1a_F_contig105.360.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp MRPVLNLFFLFGSSVGFYANPMMRRVAVSSFAGSTIVRAASATALPSQRQback to top mRNA from alignment at E-siliculosus-1a_F_contig105:73767..78463+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.360.1 ID=mRNA_E-siliculosus-1a_F_contig105.360.1|Name=mRNA_E-siliculosus-1a_F_contig105.360.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:73767..78463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:73767..78463+ >mRNA_E-siliculosus-1a_F_contig105.360.1 ID=mRNA_E-siliculosus-1a_F_contig105.360.1|Name=mRNA_E-siliculosus-1a_F_contig105.360.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:73767..78463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |