mRNA_E-siliculosus-1a_F_contig10288.241.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI) HSP 1 Score: 114 bits (286), Expect = 5.140e-31 Identity = 69/103 (66.99%), Postives = 72/103 (69.90%), Query Frame = 1 Query: 7 GTERSGQEGGVPRHHPGDTRQGVRG-QTGIL*PRSGPGEEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATAA 291
GTE SGQEG VPRHHP DTRQGVRG +T PRSGP EEAR ILD W FVAP L AGRVQ VA A V+ER+ A LK SADCWDVVANATAA
Sbjct: 16 GTESSGQEGSVPRHHPEDTRQGVRGTRTDWREPRSGPREEARCILDCLAGFTLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAA 118
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 4.770e-15 Identity = 45/65 (69.23%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATAA 291
+EARRILDR W FVAP L AGRVQ VALA VVER+RA LKFKSAD WDVVAN TAA
Sbjct: 249 QEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAA 313
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A010YGE9_9ACTN (DNA topoisomerase 1 n=4 Tax=Cryptosporangium TaxID=65502 RepID=A0A010YGE9_9ACTN) HSP 1 Score: 59.7 bits (143), Expect = 2.760e-8 Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+E RRILDR + W V PRL AGRVQ VA VVER+RA +KF+SA+ WD+
Sbjct: 172 QETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMKFRSAEYWDI 229
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A543AWD6_9ACTN (DNA topoisomerase 1 n=1 Tax=Stackebrandtia endophytica TaxID=1496996 RepID=A0A543AWD6_9ACTN) HSP 1 Score: 58.9 bits (141), Expect = 5.150e-8 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVAN 279
+EARRILDR + W V PRL AGRVQ VA VVER+RA +KF +AD W + A+
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMKFVTADYWGITAH 212
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A6J4HFQ2_9ACTN (DNA topoisomerase 1 n=1 Tax=uncultured Corynebacteriales bacterium TaxID=581187 RepID=A0A6J4HFQ2_9ACTN) HSP 1 Score: 58.5 bits (140), Expect = 7.040e-8 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+E RRILDR + W V P+L AGRVQ VA VVER+RA +KF+SA+ WD+
Sbjct: 172 QETRRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVATRLVVERERARMKFRSAEYWDI 229
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 7.170e-8 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 118 EEARRILDRF-----------HT-----WIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATA 288
+EARRI+D +T W +AP+L AGRVQ VALA +++R+ A LKFKSA+ WD+ AN TA
Sbjct: 499 QEARRIIDSILDRKYPVLLAGYTMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTA 571
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A7W1E0A8_9ACTN (DNA topoisomerase 1 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E0A8_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 9.570e-8 Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+EARRILDR + W V P+L AGRVQ VA +VER+RA ++F++AD WD+
Sbjct: 150 QEARRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVATRILVERERARMRFRAADWWDI 207
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A562V2E0_9ACTN (DNA topoisomerase 1 n=1 Tax=Stackebrandtia albiflava TaxID=406432 RepID=A0A562V2E0_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 1.310e-7 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVAN 279
+EARRILDR + W V PRL AGRVQ VA VVER+RA ++F +AD W + A+
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVRPRLSAGRVQSVATRIVVERERARMRFVTADYWGITAH 212
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: D3Q5R3_STANL (DNA topoisomerase 1 n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / CIP 108903 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) TaxID=446470 RepID=D3Q5R3_STANL) HSP 1 Score: 57.4 bits (137), Expect = 1.790e-7 Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVA 276
+EARRILDR + W V PRL AGRVQ VA VVER+RA ++F +AD W + A
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMRFVTADYWGITA 211
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match: A0A518F0G3_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518F0G3_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 1.790e-7 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANAT 285
+E+RRILDR + W + PRL AGRVQ VA +V+R+RA ++F+ A+ WD+VA T
Sbjct: 149 QESRRILDRLYGYEVSPILWRKIKPRLSAGRVQSVATKILVDRERARMRFREAEYWDLVAQFT 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10288.241.1 >prot_E-siliculosus-1a_F_contig10288.241.1 ID=prot_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp MEPNVPVKRAVFHDITQETLVKAFEVRREFFNLGQAQEKRPAASLTAFIPback to top mRNA from alignment at E-siliculosus-1a_F_contig10288:717..2068+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10288.241.1 ID=mRNA_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10288:717..2068+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10288:717..2068+ >mRNA_E-siliculosus-1a_F_contig10288.241.1 ID=mRNA_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10288:717..2068+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |