mRNA_E-siliculosus-1a_F_contig1005.94.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A6H5L4N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N7_9PHAE) HSP 1 Score: 438 bits (1127), Expect = 8.310e-154 Identity = 240/262 (91.60%), Postives = 243/262 (92.75%), Query Frame = 1 Query: 1 LGVGEGLLCLATPTVAFAFLSAPPATAVRRTNTASSTALTGIMSMSSPAGARGQSRDLRLVADTSATRRRWEGRQGRSLLQQLRSEAAAAGSEESPKPSESSTTVGAAVDDSKGEGGPIKRGFRRVARFFGAGKKMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
LG GLLCLA PTVAFAF SAPPATAVRRTNTASSTALTGIM MSS ARGQS DLR VADT AT RRWEGRQGR+LLQQLRSE AAAGSEESPKPSESSTT GAAVDD KGEGGPIKRGFRRVARFFGAGKKMPN+KELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAP FDRFIEFLMKK+GRGKGVATGLCV LVNILGTF LLSTGILLASIFSG
Sbjct: 5 LGALTGLLCLAMPTVAFAFQSAPPATAVRRTNTASSTALTGIMCMSSTR-ARGQSSDLRRVADTGATPRRWEGRQGRALLQQLRSEVAAAGSEESPKPSESSTTGGAAVDDGKGEGGPIKRGFRRVARFFGAGKKMPNVKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPAFDRFIEFLMKKSGRGKGVATGLCVVLVNILGTFVLLSTGILLASIFSG 265
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: D7FRK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK2_ECTSI) HSP 1 Score: 354 bits (909), Expect = 4.240e-121 Identity = 196/227 (86.34%), Postives = 200/227 (88.11%), Query Frame = 1 Query: 109 TALTGIMSMSSPAGARGQSR-DLRLVADTSATRRRWEGRQGRSLLQQLRSEAAAAGSEESPKPSESSTTVGAAVDDSKGEGGPIKRGFRRVARFFGAGKKMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
TALTGIMSMSSP GA GQS DLRLVADT ATRRRWEGRQGR+LLQQLRSEAA AVDDS+GEGGPIKRG RRVARFFGAGKKMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPL+PGQWQVFLVSYATLWAINNVLRVPRFALSVSLAP FDRFIEFLMKKTGRGKGVATGLCVFLVN LGTFALLSTGILLAS+FSG
Sbjct: 9 TALTGIMSMSSP-GAPGQSSSDLRLVADTGATRRRWEGRQGRALLQQLRSEAAXXXXXXXXXXXXXXXXXXXAVDDSEGEGGPIKRGLRRVARFFGAGKKMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLSPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPAFDRFIEFLMKKTGRGKGVATGLCVFLVNFLGTFALLSTGILLASMFSG 234
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A835YJB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJB4_9STRA) HSP 1 Score: 174 bits (441), Expect = 5.030e-50 Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 1 Query: 352 PIKRG-FRRVARFF-GAGKKMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSGAYHFI 801
P KRG +V FF G GK + ++GLYA+LSYGFVSNASYAIC+ ++W+ +SK++GLSPLAPGQWQ FL Y L+ NN++R R ALS++LAP FDR I F+M KT R + VAT +CVF VN+LGT AL+S GILLAS+FSG F+
Sbjct: 105 PAKRGPVGKVKLFFSGDGKNRQKLAKMGLYAVLSYGFVSNASYAICLSVSWYLASKRSGLSPLAPGQWQFFLSVYGGLFVFNNIIRPARLALSLALAPAFDRLIAFIMAKTKRSRAVATAICVFFVNVLGTTALMSGGILLASLFSGVPVFV 256
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A6V1QBW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QBW0_HETAK) HSP 1 Score: 142 bits (357), Expect = 1.850e-37 Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 1 Query: 415 IKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
++ LG ALLSYG+VSN SY IC+ LAW+ ++++GLSPLAPGQW FL Y + + NV+R RFA SV + PVFDR + F+MK+TG K A G+ VFLVNI GTF LL TG+ LAS+ +G
Sbjct: 120 LRSLGAAALLSYGWVSNTSYMICLSLAWYVHARRSGLSPLAPGQWPQFLAVYGGFFVVQNVIRPLRFAFSVFMTPVFDRMVAFIMKRTGLSKPKAFGVTVFLVNICGTFTLLFTGVTLASLAAG 243
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A7S0YP80_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YP80_9CRYP) HSP 1 Score: 138 bits (347), Expect = 1.070e-35 Identity = 76/156 (48.72%), Postives = 96/156 (61.54%), Query Frame = 1 Query: 340 GEGGPIKRGFRRVARFFGAGK-KMPNIKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGR------GKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
GE GPI + + FFG K + + LG ALLSYGFVSN SY CV AW K+TGLSPLA GQW FL Y WA+ N++R RFALSV++APVF+RF+ F+ K+ K VA G+ VFLVN+LGT + L G+ LA+ +G
Sbjct: 123 GERGPIAKAVGAIKSFFGKAKMEKAQLAALGTSALLSYGFVSNVSYVSCVICAWVVFGKQTGLSPLAAGQWPKFLAVYGGFWAVLNIIRPARFALSVAIAPVFERFVTFVQKRASAVTKKEVPKPVAFGIVVFLVNLLGTLSYLFLGLTLATSIAG 278
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A1E7FWD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWD1_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.590e-33 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 Query: 415 IKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLS 753
+ ++GL ALLSYGFVSN SY + VGLAWF SKKTGLSPLAPGQW FL YA + NN++R R A+S+ + P FD+ + + +KTG K ++ G+ VFL NI GT +L++
Sbjct: 4 LAKMGLSALLSYGFVSNMSYCVSVGLAWFGFSKKTGLSPLAPGQWPKFLAVYAGFYVFNNIVRPIRLAISIGVTPYFDKAVATIQRKTGFNKTLSIGIVVFLANICGTTSLMA 116
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A448YVF5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVF5_9STRA) HSP 1 Score: 130 bits (327), Expect = 5.530e-33 Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 415 IKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
+ ++GL ALLSYGFVSN SY V LAWF SKKTGLSPLAPGQW+ FL YA + NN +R R A+S+ + P FD+ + + +KT K V+ G+ VFL N+ GT +L+S GI +AS+ +G
Sbjct: 134 LAKMGLSALLSYGFVSNISYCFTVSLAWFGFSKKTGLSPLAPGQWKGFLAVYAGFYVFNNFIRPMRLAVSIGVTPYFDKAVAAIQRKTKFSKSVSIGIVVFLANVCGTTSLMSLGIYIASLAAG 257
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A7S1Y247_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y247_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.640e-31 Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 421 ELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
++G+ LLSYG+VSN SYAIC G+AWF S++TGLSPLAPGQW+ FL YA NNV+R RF LSV+ + FD + + K+ K A GL VFL N +GT A + GI LAS SG
Sbjct: 62 KMGMSCLLSYGWVSNMSYAICTGIAWFIFSRQTGLSPLAPGQWKKFLAVYAGFALFNNVIRPVRFGLSVAASRYFDGAVNSIQKRLNIRKAYAIGLMVFLANFVGTIAAMCLGICLASAASG 183
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: K0S7R0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7R0_THAOC) HSP 1 Score: 125 bits (314), Expect = 4.780e-31 Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 415 IKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
+ +LGL ALLSYGFVSN SYA+ + L+WF SK+TGLSPLA GQW+ FL Y + NN++R RF SV +A F++F++F+ +K+ + A G+ VFL N+ GTFA + G+ +AS +G
Sbjct: 134 LSKLGLSALLSYGFVSNMSYAVTLSLSWFIHSKRTGLSPLAEGQWKPFLAVYGGFYVFNNIIRPLRFGASVLVAKYFEQFVKFIQRKSHLSRKWAIGVVVFLANVCGTFAAMGLGVFIASTAAG 257
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Match: A0A6U6GPR6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GPR6_9STRA) HSP 1 Score: 125 bits (313), Expect = 5.410e-31 Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = 1 Query: 415 IKELGLYALLSYGFVSNASYAICVGLAWFASSKKTGLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPVFDRFIEFLMKKTGRGKGVATGLCVFLVNILGTFALLSTGILLASIFSG 786
+ ++G+ ALLSYGFVSN SY++ V LAW+ SKKTGLSPLAPGQW+ FL YA + NN +R R AL+ + FD + F+ +KT + + G VFL N GT A +S GI+LASI +G
Sbjct: 125 LAKMGMSALLSYGFVSNMSYSVSVSLAWYGFSKKTGLSPLAPGQWKPFLAVYAGFYVFNNFVRPIRVALAAGVTKYFDATVNFIQRKTKFSRSASVGTVVFLANFCGTLAAMSFGIMLASIAAG 248 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1005.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1005.94.1 >prot_E-siliculosus-1a_F_contig1005.94.1 ID=prot_E-siliculosus-1a_F_contig1005.94.1|Name=mRNA_E-siliculosus-1a_F_contig1005.94.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=269bp LGVGEGLLCLATPTVAFAFLSAPPATAVRRTNTASSTALTGIMSMSSPAGback to top mRNA from alignment at E-siliculosus-1a_F_contig1005:3570..7369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1005.94.1 ID=mRNA_E-siliculosus-1a_F_contig1005.94.1|Name=mRNA_E-siliculosus-1a_F_contig1005.94.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3800bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1005:3570..7369- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1005:3570..7369- >mRNA_E-siliculosus-1a_F_contig1005.94.1 ID=mRNA_E-siliculosus-1a_F_contig1005.94.1|Name=mRNA_E-siliculosus-1a_F_contig1005.94.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1614bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1005:3570..7369- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |