mRNA_E-siliculosus-1a_F_contig1004.92.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1004.92.1 vs. uniprot
Match: D7FKN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI) HSP 1 Score: 1155 bits (2988), Expect = 0.000e+0 Identity = 628/698 (89.97%), Postives = 640/698 (91.69%), Query Frame = 1 Query: 1 RERPFVRQKWLKRLRHQKAINIESDHRDASSATLSPSNTSSTPATARAPVFSSGQEDAHTPPSVLTRVGREHIRSVVQLALSEARVNAFVVISSLEGLLSVATERIGREGSVGTPSSLRDVSQAGGRSEGGEKANRTGESSQDSAAKLGGRASKLYPGPGRNDSGSEDGSLRRAQRGHPTTPSSTNGSSAGRGGSGAALCVRLGAVRAVLGCLEEHAGHKKIEPLAVRLLWVFASEVKAAAAIRGNPAVAAACAARMTPSTALPAACAVDDNTANTSTASFLSTGQASDGGGVGGDPGYDERKGSAGSRKNLGNATSTTEASAEKVDSNSTSAVKPLDLGGPEPGSTAGDGHGSSLAVPAPSSMAKLPPCLPSNTRLEEQAEG-----QSRDRAMSSAASARKSPPGPQMKVPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTTLQHLVSRVKQEAASRWDGSAEDCSDRYARLAETCLRVMECLGRVERGRRRLVRGGSVEIAISTVRCFRCHSGVLTAATGLLLLLSVSPEGRGWILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHPHEDVHDWRQRLRRQD 2079
RERPFVRQKWLKRLRHQ AINIESDHRDASSA LSPSNT+STPA+ARAP FSSGQEDAHTPPS LTRVGREH+RSVVQLALSEARVNAFVVISSLEGLLSVA ERIGREG VGTPSSLR+VSQAGGRSEGG K R GESSQD AA LGGRA+KLYPGPGRNDSGSEDGSLRRA RGHPTTPSSTNGSS GRG SGAALCVRL AV AVLGCLEEHAGHKKIEPLAVRLLWVFASEV AAAAIRGNPAVAAACAARMTPS DNTAN STASFLSTGQASDGGGVG DPGYD RKGSAG RK LGNATSTTEASAEKVDSN TSA+KPLDLGGPE GSTAGDGHGSSLAVPAP SMA L PCL SNTRLEE+ E +SRDRAMSSAASARKSPPG M VPTTDLVFVLSVAVQDSP CQRLVLKAGGVAAMS TLQHLVSRVKQEA SRWDG AEDCSDRYARLAETCLRVME LG VERGRRRLVRGGSVEIAIST+RCFRCHSGVLTAATGLLLLLSVSPEGRG ILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPG+KHIPGWTVSEEERL TEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHP+EDVHDWRQRLRR +
Sbjct: 2 RERPFVRQKWLKRLRHQTAINIESDHRDASSAALSPSNTTSTPASARAPAFSSGQEDAHTPPSALTRVGREHVRSVVQLALSEARVNAFVVISSLEGLLSVAAERIGREGPVGTPSSLREVSQAGGRSEGGNKKKRIGESSQDPAANLGGRATKLYPGPGRNDSGSEDGSLRRAHRGHPTTPSSTNGSSTGRGESGAALCVRLEAVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMTPS----------DNTANASTASFLSTGQASDGGGVGDDPGYDGRKGSAGGRKTLGNATSTTEASAEKVDSNGTSAMKPLDLGGPETGSTAGDGHGSSLAVPAPPSMANLLPCLSSNTRLEEREEDASPERKSRDRAMSSAASARKSPPGSHMNVPTTDLVFVLSVAVQDSPVCQRLVLKAGGVAAMSATLQHLVSRVKQEAGSRWDGGAEDCSDRYARLAETCLRVMEYLGCVERGRRRLVRGGSVEIAISTIRCFRCHSGVLTAATGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGKKHIPGWTVSEEERLNTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHPNEDVHDWRQRLRRYE 689
BLAST of mRNA_E-siliculosus-1a_F_contig1004.92.1 vs. uniprot
Match: A0A6H5JF41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE) HSP 1 Score: 996 bits (2576), Expect = 0.000e+0 Identity = 566/705 (80.28%), Postives = 590/705 (83.69%), Query Frame = 1 Query: 1 RERPFVRQKWLKRLRHQKAINIESDHRDASSATLSPSNTSSTPATARAPVFSSGQEDAHTPPSVLTRVGREHIRSVVQLALSEARVNAFVVISSLEGLLSVATERIGREGSVGTPSSLRDVSQAGGRSEGGEKANRTGESSQDSAAKLGGRASKLYPGPGRNDSGSEDGSLRRAQRGHPTTPSSTNGSSAGRGGSGAALCVRLGAVRAVLGCLEEHAGHKKIEPLAVRLLWVFASEVKAAAAIRGNPAVAAACAARMTPSTALPAACAVDDN--TANTSTASFLSTGQASDGGGVGGDPGYDERKGSAGSRKNLGNATSTTEASAEKVDSNSTSAVKPLDLGGPEPGSTAGDGHGSSLAVPAPSSMAKLPPCLPSNTRL----EEQA--EGQSRDRAMSSAASARKSPPGPQMKVPTTDLVFVLSVAVQDSPECQRLVLKAGGVAAMSTTLQHLVSRVKQEAASRWDGSAEDCSDRYARLAETCLRVMECLGRVERGRRRLVRGGSVEIAISTVRCFR-CHSG------------------------------------VLTAATGLLLLLSVSPEGRGWILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNL 1980
RERPFVRQKWLKRLRH+ AINIESDHRDASSA SPSNT+STPA+ARAP FSSGQED HTPPS LTRVGREH+RSVV+LALSEARVNAFVVISSLEGLLSVATER+GREGSVGTP+SL DVSQAG RSEGG++ NRTGESSQ SAAKLGGR++KLY G GRNDSGSEDGSLRRAQRGHPTTPSST GSS G G SGAALCVRLGAV AVLGCLEEHAGHK IEPLAVRLLWVFASEV AAAAIRGNPAVAAACAARMTPS ALPA CA+DDN TANTSTASFLSTGQAS G VG DPGYD RKGSAG RK LGNATST EASAEK DSN TSAVKP LGGPE GSTAGDGHGSSLAVPAPS+MAKL PCL SNTRL EE A E Q RDR MSSAAS RKSP G +K+PTTDLVFVLSVA+QD+PECQRLVLKAGGVAAMSTTLQHL+SRVKQ A SRWD S EDCSD YARLAE CLRVME LGRVERGRRRL RGG VEIAIST+RCFR CH G +L+ LL L P +ARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQ+GN+
Sbjct: 2 RERPFVRQKWLKRLRHETAINIESDHRDASSAAFSPSNTTSTPASARAPAFSSGQEDVHTPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTPNSLHDVSQAGRRSEGGDETNRTGESSQYSAAKLGGRSTKLYSGAGRNDSGSEDGSLRRAQRGHPTTPSSTKGSSPGIGESGAALCVRLGAVPAVLGCLEEHAGHKTIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMTPSAALPATCAIDDNGGTANTSTASFLSTGQASHGREVGDDPGYDRRKGSAGRRKTLGNATSTMEASAEKFDSNGTSAVKPPGLGGPETGSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDGEEEEDASPERQRRDRVMSSAASTRKSPSGSPLKLPTTDLVFVLSVAMQDTPECQRLVLKAGGVAAMSTTLQHLISRVKQGAGSRWDRSEEDCSDSYARLAEMCLRVMEHLGRVERGRRRLERGGYVEIAISTIRCFRGCHRGRDRFRIVGKLWPCAEHTRQPRARSSGGGSIFFCTCDILSTRRRLLYLHRCCPS------QARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQVGNM 700 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1004.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1004.92.1 >prot_E-siliculosus-1a_F_contig1004.92.1 ID=prot_E-siliculosus-1a_F_contig1004.92.1|Name=mRNA_E-siliculosus-1a_F_contig1004.92.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=442bp MTPSTALPAACAVDDNTANTSTASFLSTGQASDGGGVGGDPGYDERKGSAback to top mRNA from alignment at E-siliculosus-1a_F_contig1004:30213..34549+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1004.92.1 ID=mRNA_E-siliculosus-1a_F_contig1004.92.1|Name=mRNA_E-siliculosus-1a_F_contig1004.92.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4337bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:30213..34549+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1004:30213..34549+ >mRNA_E-siliculosus-1a_F_contig1004.92.1 ID=mRNA_E-siliculosus-1a_F_contig1004.92.1|Name=mRNA_E-siliculosus-1a_F_contig1004.92.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2652bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:30213..34549+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |