mRNA_E-siliculosus-1a_F_contig100.58.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig100.58.1
Unique NamemRNA_E-siliculosus-1a_F_contig100.58.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 6.270e-121
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 519
            AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG
Sbjct:    2 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A7S2V4A8_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A8_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.080e-94
Identity = 136/165 (82.42%), Postives = 151/165 (91.52%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMR ++VDKLVLNCSVGESGDRLTRA KVLEQLTGQ+P  SKARYTVRSFGIRRNEKIACHVTVRG+KALEILERGLKVKEYEL+R+NFS TG+FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPG RV KRKA+ +++G  H++ K DA+KWFQ KFEGIV
Sbjct:    8 NPMRAVQVDKLVLNCSVGESGDRLTRAIKVLEQLTGQTPCVSKARYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELRRRNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLRRPGNRVGKRKARQSRMGAPHRLAKDDAIKWFQQKFEGIV 172
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: B7GB09_PHATC (50S ribosomal protein L5, chloroplastic n=3 Tax=Bacillariophyta TaxID=2836 RepID=B7GB09_PHATC)

HSP 1 Score: 280 bits (717), Expect = 1.640e-94
Identity = 133/170 (78.24%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +E KTN MR++KVDKL+LNC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL +KNFS+TG+FGFGI EHIDLG+KYDP+TGIYGMDFFV L RPG RVA+RK +  +IG+ HK+TK D++KWFQ KFEG+V
Sbjct:    2 SETKTNAMREIKVDKLILNCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLQKNFSDTGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLTRPGARVARRKIRQGRIGFNHKITKEDSIKWFQDKFEGVV 171
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A1Z5JJ06_FISSO (50S ribosomal protein L5, chloroplastic n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ06_FISSO)

HSP 1 Score: 280 bits (717), Expect = 1.700e-94
Identity = 134/170 (78.82%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:    4 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            AE K NPMRD+KVDK+V+NC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL  KNFS TG+FGFGI EHIDLG+KYDP+TGIYGMDFFV LNRPG RV++RK +  ++G  HK+TK DA+KWFQ KFEG+V
Sbjct:    2 AETKANPMRDIKVDKMVINCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLDKNFSETGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLNRPGTRVSRRKIQQTRMGKNHKITKQDAIKWFQDKFEGVV 171
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A0D3AUD9_BRAOL (Uncharacterized protein n=10 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3AUD9_BRAOL)

HSP 1 Score: 279 bits (714), Expect = 5.780e-94
Identity = 132/166 (79.52%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRA+KVLEQL+GQ+PV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A0J8BKL6_BETVV (Uncharacterized protein n=6 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0J8BKL6_BETVV)

HSP 1 Score: 279 bits (714), Expect = 5.780e-94
Identity = 132/166 (79.52%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PVYSKARYTVRSFGIRRNEKIAC+VTVRG+KA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A0K9Q188_ZOSMR (60S ribosomal protein L11-1 n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0K9Q188_ZOSMR)

HSP 1 Score: 279 bits (713), Expect = 7.670e-94
Identity = 132/165 (80.00%), Postives = 153/165 (92.73%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKAR+TVRSFGIRRNEKIACHVTVRG+KA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A7J6V5X0_THATH (60S ribosomal protein L11 n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A7J6V5X0_THATH)

HSP 1 Score: 279 bits (713), Expect = 8.210e-94
Identity = 133/165 (80.61%), Postives = 152/165 (92.12%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFFVVL RPGYRV +R+   ++IG QH+VTK DA+KWFQ K+EG++
Sbjct:    9 NPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRIGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 278 bits (712), Expect = 1.090e-93
Identity = 130/167 (77.84%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:   13 KTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            ++NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKAR+TVRSFGIRRNEKIACHVTVRG+KA++++E GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    6 QSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLIESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVI 172
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Match: A0A1S4CT55_TOBAC (60S ribosomal protein L11-1-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CT55_TOBAC)

HSP 1 Score: 278 bits (712), Expect = 1.130e-93
Identity = 132/166 (79.52%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 513
            +NPMR++KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI6.270e-121100.0050S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
A0A7S2V4A8_9STRA1.080e-9482.4250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
B7GB09_PHATC1.640e-9478.2450S ribosomal protein L5, chloroplastic n=3 Tax=Ba... [more]
A0A1Z5JJ06_FISSO1.700e-9478.8250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
A0A0D3AUD9_BRAOL5.780e-9479.52Uncharacterized protein n=10 Tax=Brassicaceae TaxI... [more]
A0A0J8BKL6_BETVV5.780e-9479.52Uncharacterized protein n=6 Tax=Chenopodiaceae Tax... [more]
A0A0K9Q188_ZOSMR7.670e-9480.0060S ribosomal protein L11-1 n=6 Tax=Mesangiosperma... [more]
A0A7J6V5X0_THATH8.210e-9480.6160S ribosomal protein L11 n=3 Tax=Spermatophyta Ta... [more]
A0A0K9NLH5_ZOSMR1.090e-9377.8460S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A0A1S4CT55_TOBAC1.130e-9379.5260S ribosomal protein L11-1-like n=4 Tax=Nicotiana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig100contigE-siliculosus-1a_F_contig100:53169..57068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size498
Model size522
Exons5
Ec32 orthologEc-06_008360.1
Ec32 ortholog descriptionRibosomal protein L5
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0094@1,KOG0397@2759
EggNOG free text desc.rRNA binding
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
KEGG ModuleM00177,M00384
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG koko:K02868,ko:K10523,ko:K15076
Preferred nameRPL11
Seed eggNOG ortholog2880.D7FN46
Seed ortholog evalue1.8e-89
Seed ortholog score335.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig100.58.1prot_E-siliculosus-1a_F_contig100.58.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig100 53169..57044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.526414-CDS-E-siliculosus-1a_F_contig100:53168..531981622927505.526414-CDS-E-siliculosus-1a_F_contig100:53168..53198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 53169..53198 -
1696318556.6620522-CDS-E-siliculosus-1a_F_contig100:53168..531981696318556.6620522-CDS-E-siliculosus-1a_F_contig100:53168..53198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 53169..53198 -
1622927505.5365937-CDS-E-siliculosus-1a_F_contig100:53398..535291622927505.5365937-CDS-E-siliculosus-1a_F_contig100:53398..53529Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 53399..53529 -
1696318556.6752658-CDS-E-siliculosus-1a_F_contig100:53398..535291696318556.6752658-CDS-E-siliculosus-1a_F_contig100:53398..53529Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 53399..53529 -
1622927505.5466487-CDS-E-siliculosus-1a_F_contig100:54768..549191622927505.5466487-CDS-E-siliculosus-1a_F_contig100:54768..54919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 54769..54919 -
1696318556.686949-CDS-E-siliculosus-1a_F_contig100:54768..549191696318556.686949-CDS-E-siliculosus-1a_F_contig100:54768..54919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 54769..54919 -
1622927505.55719-CDS-E-siliculosus-1a_F_contig100:55430..554921622927505.55719-CDS-E-siliculosus-1a_F_contig100:55430..55492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 55431..55492 -
1696318556.6948316-CDS-E-siliculosus-1a_F_contig100:55430..554921696318556.6948316-CDS-E-siliculosus-1a_F_contig100:55430..55492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 55431..55492 -
1622927505.5688715-CDS-E-siliculosus-1a_F_contig100:56920..570441622927505.5688715-CDS-E-siliculosus-1a_F_contig100:56920..57044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 56921..57044 -
1696318556.7080717-CDS-E-siliculosus-1a_F_contig100:56920..570441696318556.7080717-CDS-E-siliculosus-1a_F_contig100:56920..57044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 56921..57044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.577438-UTR-E-siliculosus-1a_F_contig100:57044..570681622927505.577438-UTR-E-siliculosus-1a_F_contig100:57044..57068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 57045..57068 -
1696318556.7195442-UTR-E-siliculosus-1a_F_contig100:57044..570681696318556.7195442-UTR-E-siliculosus-1a_F_contig100:57044..57068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 57045..57068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig100.58.1

>prot_E-siliculosus-1a_F_contig100.58.1 ID=prot_E-siliculosus-1a_F_contig100.58.1|Name=mRNA_E-siliculosus-1a_F_contig100.58.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=166bp
MRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFG
IRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQE
HIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTD
AVKWFQAKFEGIVTG*
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mRNA from alignment at E-siliculosus-1a_F_contig100:53169..57068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig100.58.1 ID=mRNA_E-siliculosus-1a_F_contig100.58.1|Name=mRNA_E-siliculosus-1a_F_contig100.58.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:53169..57068- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGAGATCAAGACCAACCCGATGAGGGACCTGAAGGTCGACAAGCT
GGTGCTTAACTGCTCCGTCGGAGAGTCGGGTGACAGGCTGACGCGCGCAG
CGAAGGTGCTGGAGCAACTCACGGGCCAGTCGCCGGTCTACTCCAAGGGT
GAGGCCCTAGTACAATATTCATGAATTGTTGTGTGCATCCGATGCATACG
AGAGCTGGGGCCATCGCTTTTTGCAGCGGGAAGAGGAACAGACATGCCGC
CTACACCGTACGAAGTCTTGATGGAAGCTAGTAGATGGAAATGGAAAGGT
TGGTCTGTAGTGTCTTGTGTCACCTTTGATCGCCCATGAACTACATTGGT
GTCCCCACTATCGCCCCCCAACCCCGTTCGGGCTTGTCTGGTCTAGGGGC
AACTCGCTCGAGATCCACAGCTGTCTACAGCAGCACAAAACCTGTGTCAG
TCACCGTGCGGTGATGTGCCAGGGGGTGTCCTCGTCGACACGCCTTTGTG
TGGGTAGCGTATCAAATTTCAAGTCAGCGACCATTTGTTGAACTTTGATG
TCTTGGTCAGCTGTCTACAGCAGCACAAAACCTGTGTCAGTCACCGTGCG
GTGATGTGCCAGGGGGTGTCCTCGTCGACACGCCTTTGTGTGGGTAGCGT
ATCAAATTTCAAGTCAGCGACCATTTGTTGAACTTTGATGTCTTGGTCGT
GAGCAGCAGTGAAGCAGTTTCCTCTAAACGAAGTATGAATTCCGTATGCT
TTAATAAAACTTCGAGCAGCTTGCCTCTCGCCCTAATCCTAAGGTCCATG
TAGTCCACCGGTGCGCTTGCTCCCGGCTGTTTGTTGTTGCTCCAAAGCGG
TCGAAACTCTCCCACAAGTGAGGTCTGCCATGGAGCACTTTTCCTTTTAA
TGAAGCGCTGATGCTCCGTCGATCACTAACTACAAACACATTCATAGTTG
TGGTTCAGCGTCATCCGACACAACCATGTGAGCATGGTACAACAGCAGGC
AATCGATGCCCTACTTTGTTTGCAAGCGTGGTACGTGATACATATTGTCT
GAGTATGTGTCCACAGCATTATATGGTCTCGGGGGGTGATGAGACGCCAC
CGCTTTGTGTGTCGGTGCTGCTGGAGGTGGAGCGGGATGTCAAGGTGGCT
ATTGAACCAAAATACGGGTGCTAATCATGGCCCCGAATGTCGCGGAGACG
CTCTTGTTTCTGTGGTGGGCGGTGTGGGTCTTTCTCCTCAGTAGATGGGT
CAGGCATCGTATTATGTCTAGACTGTCACGCTTTTCCGGTACTGGGTCAT
CGGCGGGGGGGGGGGTGCTGTTTTTTGCCTCTGGGTTGGTAAAATTTGTT
GACGGCACCGGGAATCAACTGCGAAGAGGGTGTGGAGCATCGAACGGTTA
CAATTTCGAAACAGCGATGCCTCTTACCTTTACGTTCGATAACAGACGAG
GCTACTAATTTGGCGCCCTACCTGTTCCCTGCCGGCATTCGTGAGGGATG
CCCTAAGTGTAGTAACGCATACCCCAACCCTCCCTTTTTTTCCGTGTGTG
TGTTAACCAATCGCTACTTTGTGCAGCACGCTACACGGTTCGTTCGTTCG
GAATCCGGCGTAACGAGAAGATCGCGTGCCACGTGACGGTGAGAATGGCT
ATTGAGCACAGTTGTTTCTGAACCTTTTGGTTCACGTGGTGCGTTTGGCA
TTACCATTCTGTCTCAAGCACTGCCATCGGTACGCTCCGTCCTTGAACGT
GTGCATGTATCAGGATTTTCATTCTTTTGACGTGTGCATACCGTAAGAGT
CGGAGAGATGACACCCCCGTGTTAGCGTTTTTTTGTAGCGTATTTCTCCA
CAACTAGTAGGGTGTGAACACCAACCGATACCTCTCAGGAAAGCCCCCTG
CAAGATGTTTCCAAAACTACCCTTTTCGGCAGTGGTACCCCCCTGGTTGT
GGAGAAATACGCTATACAAAAACGCTAACACGGGGGTGCCATCTCTCCGA
CTTCCGGAATCCCTCGTATGGATGTCCCCGACGACTGAAAAACGATGAAT
CTCTCAACTGCTATGGTCGCTTCACATGTTGTTTGTCTAGCGCTCTGCTG
CGCTGCCTGGTCCTGATTTCAGTTCCGTTGATACTATCTGGATGCGCAGG
TCCGCGGCGATAAGGCGTTGGAGATCCTTGAGCGAGGGCTTAAGGTGAAG
GAGTACGAGCTCAAGCGCAAGAACTTCTCCAACACCGGCAGCTTTGGCTT
TGGTATCCAGGAACACATCGACCTCGGACTGAAATACGACCCGTCCACCG
GTAAGATTTCATCTGCATACTGCACCCCAAATAGTGACCCTGTGTTGCGC
CCACAACCCTGCTCAGAACCCCGTGCTGAAGCCGAAGCATGTCCACCCAG
TGCAAAATTGTGTGTGAACAGAGAATGCAACCCACTGCTATAGTAGCAGG
ATTTGTTGCTCTGTTTCGGCTACAAATACGTGGTGTGAGGCTTGCAGACG
TTTCTGCTCGTATATGAAAATCACTGCTCCGGATACAGGAATTGAATCGT
AACACGGCAGCAAACACCATAGGACTCGTACTATTATCCTCTGCAAAAAC
GGCGTGCCGAAGTTTCTCCCTCAACAAGCCAAATACTTTGAACCGAAGTA
CAGTAGATACAGGCTGACATGTTAATATAGATAGAATATTGTGTCTAGCA
ATTCTGCCTTGGAACAACGTTGTATTCGCGTAGGCAGGGCAGTGTGCTGA
GTGAGCTCAAACCTTCTGTCAACACTCGCGGCGCGTAGACGTGCTATTTT
TGTTTTGCCTTGTTCGGCGTCTGGCTCCCTCCATCCTAGCTGTCATGGTA
CCACGTTGGAGGTGTGAGGTACTAATGTTACAGCGTGCTATGCTACACAC
GCCCCGCAATTAAACGCTTCGACTCGATCGCGCTTAGTGTTCGAACTACC
GTCGGTAGAATGTCATTTGGGGCGTGGTGTACAGCTCATTGTTTTCTCCG
TGATTCATCTTGAAGCACATGTCGGGGCCTCGTGCTTTGATCGGTGGTAC
TGGTTGTGTCTAGCTATAATTCTGCTAATTTTATGGCTGCGGCCATCTTG
CCTAAGTGCTAATATTGTCGAACATTGGCGTGAATTCGAGGCCTATCATA
GTTTAATGGACGGTTGTGTATGAAGAGCGACGCCCCCCAGCTTGGGGCAA
AGGTGCACATATACTGTTTGGCCACGGTGGTTCGTGACACCATTTCACCG
TCGCGTTATTTTCTGGGTGCCAGTTCGGTTGGTCCATCTACTTCTTATGA
TGGCCGTATTTGAATACGAACAGGGTCCACCCCATGTTTCGGGACCTACA
TCTAACCCGCGCCGTCTCGTTCGCGATAAATGGGCGTCCTCTTTGACGCA
AACCAGTATTCCTTGTACGTACGGCGTGGCAGTTTTGAGCAGCTTGCACC
CTCTCCACACGTTTGGTAGCTATCGTTGTTAATTGTCGGTATGATATGAT
AGCATATGAGCAACGACGACGTCCTCTCGCTCCTTGCAGGTATCTACGGA
ATGGACTTTTTCGTGGTGCTCAACCGGCCGGGGTACCGCGTGGCGAAGCG
CAAGGCGAAGTGCGCCAAGATCGGTTACCAGCACAAGGTCACCAAGACTG
ACGCCGTCAAGTGGTTCCAGGTGCGTCGCCTCTTCCGTGTGTGAATTCAA
ACATGTATCGACGATTGCCTGGGAGATGATTTTTCCTTCAGAGCGATCAA
ATGACTGGATCAAGTTGGGTGCAATCGTCCCTGCCAGCCGCAAGGGGGCG
GTTACTCACAGTTTCATTGTGTTTTCTGACCACTAACGATCTCTTCTCTT
GCTTGTGTGTGCGCTTTCAGGCAAAGTTCGAGGGAATCGTGACGGGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:53169..57068-

>mRNA_E-siliculosus-1a_F_contig100.58.1 ID=mRNA_E-siliculosus-1a_F_contig100.58.1|Name=mRNA_E-siliculosus-1a_F_contig100.58.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:53169..57068- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGGACCTGAAGGTCGACAAGCTGGTGCTTAACTGCTCCGTCGGAGA
GTCGGGTGACAGGCTGACGCGCGCAGCGAAGGTGCTGGAGCAACTCACGG
GCCAGTCGCCGGTCTACTCCAAGGATGAGGGACCTGAAGGTCGACAAGCT
GGTGCTTAACTGCTCCGTCGGAGAGTCGGGTGACAGGCTGACGCGCGCAG
CGAAGGTGCTGGAGCAACTCACGGGCCAGTCGCCGGTCTACTCCAAGGCA
CGCTACACGGTTCGTTCGTTCGGAATCCGGCGTAACGAGAAGATCGCGTG
CCACGTGACGCACGCTACACGGTTCGTTCGTTCGGAATCCGGCGTAACGA
GAAGATCGCGTGCCACGTGACGGTCCGCGGCGATAAGGCGTTGGAGATCC
TTGAGCGAGGGCTTAAGGTGAAGGAGTACGAGCTCAAGCGCAAGAACTTC
TCCAACACCGGCAGCTTTGGCTTTGGTATCCAGGAACACATCGACCTCGG
ACTGAAATACGACCCGTCCACCGGTCCGCGGCGATAAGGCGTTGGAGATC
CTTGAGCGAGGGCTTAAGGTGAAGGAGTACGAGCTCAAGCGCAAGAACTT
CTCCAACACCGGCAGCTTTGGCTTTGGTATCCAGGAACACATCGACCTCG
GACTGAAATACGACCCGTCCACCGGTATCTACGGAATGGACTTTTTCGTG
GTGCTCAACCGGCCGGGGTACCGCGTGGCGAAGCGCAAGGCGAAGTGCGC
CAAGATCGGTTACCAGCACAAGGTCACCAAGACTGACGCCGTCAAGTGGT
TCCAGGTATCTACGGAATGGACTTTTTCGTGGTGCTCAACCGGCCGGGGT
ACCGCGTGGCGAAGCGCAAGGCGAAGTGCGCCAAGATCGGTTACCAGCAC
AAGGTCACCAAGACTGACGCCGTCAAGTGGTTCCAGGCAAAGTTCGAGGG
AATCGTGACGGGCTGAGCAAAGTTCGAGGGAATCGTGACGGGCTGA
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