mRNA_E-siliculosus-1a_F_contig100.55.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI) HSP 1 Score: 309 bits (792), Expect = 2.930e-97 Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 3 Query: 927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTTNKEDAQFKDVEGPCVSSALNSSSLYEVKAPP 1394
LSPLEFSRRTCAELGIG+SFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALT HQQVSRFRMAAPSSTTN EDAQFKDVEGPCVSSALNSSSLYEVKAPP
Sbjct: 39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFKDVEGPCVSSALNSSSLYEVKAPP 194
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A835YTF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF3_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.020e-16 Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3 Query: 927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIA---PAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSS 1295
LSP F+ T A+L + P+A++I Q++ P+W+ A PAGE + + +++R +V++RD+ +WD+N P NSPE FA TVADL LPQ MEP IAL + +Q++ +R S+
Sbjct: 530 LSPEAFAAATAADLALPRKLEAPLARAIRAQVVTAQATLPVWSGSSGAAAMYPAGEALVPIELELRLGAVLYRDKFEWDMNEPLNSPEAFAARTVADLALPQPMEPAIALALREQLANYRQLTRSA 655
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A2G4T9N8_RHIZD (SNF5-domain-containing protein n=1 Tax=Rhizopus microsporus ATCC 52813 TaxID=1340429 RepID=A0A2G4T9N8_RHIZD) HSP 1 Score: 65.5 bits (158), Expect = 2.310e-7 Identity = 51/187 (27.27%), Postives = 86/187 (45.99%), Query Frame = 3 Query: 927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGR--------------------------KNPMWAVEGTIAPAGENIQTVI-IDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTT---NKE--DAQFKDVEGPCVSSALNSSSLYEVKAP 1391
+SP++F+R TC +LG+ L FV+ IA SI Q+ +Y K+ M ++ + ++ I +D+ ++ DR +WD+ C NSPE FA++ V++L L E + IA +I +Q+ + + S NK D FK P V A+ +S+ + P
Sbjct: 197 VSPIQFARITCDDLGLPLYFVRLIAASIVDQIEDYYSSIYGADEENVESTSLHHPLAIRNTKLKDGMLDLKTDLFTGKTELRIFIKLDITIGNMELNDRFEWDITCKENSPEAFAKVLVSELGLSGEFKSAIAHSIREQIYTYVKSLHLSQYHDWNKSIMDRGFKKSFLPIVKKAMRNSNKIKRFTP 383
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A3LPL9_PICST (Chromatin structure remodeling complex protein SFH1 (SNF5 homolog 1) n=1 Tax=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) TaxID=322104 RepID=A3LPL9_PICST) HSP 1 Score: 64.7 bits (156), Expect = 2.590e-7 Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 3 Query: 927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVII---DVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTTNKEDAQFKDVEG 1337
++P +F+ C +L + S IA+SI QQ+ +Y + + N+ V+I V +F+D+ +WD+N +PE FARI VAD+ E P I+ +H+ + R + T N E F V G
Sbjct: 144 ITPYQFADILCNDLELPNSMNSQIAESIVQQIDDYNYASNL--------QLPSNVPCVVIIDLSVSLNKHLFQDKFEWDLNGNGVTPEDFARIVVADMGFSLEFYPAISHALHEIIIRVKKEIVDGTYNNEIHNFHQVRG 275
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A7S3CK57_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CK57_9SPIT) HSP 1 Score: 53.9 bits (128), Expect = 5.590e-5 Identity = 23/69 (33.33%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 1080 GENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAA 1286
GE ++ + + +R +++ RD+ +WD+N P NSPE FA DL L + IA +I +Q++ + A
Sbjct: 3 GELLRVIQLKIRIGNIVLRDKFEWDINNPQNSPEDFAESLCTDLGLGSDFMLPIAHSIREQINEHQRTA 71 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig100.55.1 >prot_E-siliculosus-1a_F_contig100.55.1 ID=prot_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=204bp MAFPPVSGGLDTNSTLLLFIDSTCLHRNCRFSNDLPSLCFVERRAMQLSPback to top mRNA from alignment at E-siliculosus-1a_F_contig100:31769..34443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig100.55.1 ID=mRNA_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2675bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:31769..34443- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:31769..34443- >mRNA_E-siliculosus-1a_F_contig100.55.1 ID=mRNA_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:31769..34443- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |