mRNA_E-fasciculatus_F_contig10034.50.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10034.50.1
Unique NamemRNA_E-fasciculatus_F_contig10034.50.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.760e-60
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333
            DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV+  V
Sbjct: 1115 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVTKLV 1225          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.790e-59
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333
            DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTG+MSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQA+GRVYRLGQTRPVTV+  V
Sbjct: 1151 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGSMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAVGRVYRLGQTRPVTVTKLV 1261          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7J7PDI8_9CHLO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PDI8_9CHLO)

HSP 1 Score: 149 bits (376), Expect = 5.260e-44
Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            DP+SK+LVFSQ+NS+LEWL+R LP+ GF FRT+TG+M++ +R  A+ AF  DPPTTVFLLS+RSGAVGINLT A++V+LLEP LN ALE+QAIGR +R+GQ R VTV
Sbjct:    5 DPSSKALVFSQYNSTLEWLQRRLPEEGFSFRTITGSMAQRKRARAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVYLLEPCLNPALEEQAIGRAWRMGQQRKVTV 111          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S0GC86_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC86_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.200e-43
Identity = 76/107 (71.03%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            +P SKSLVFSQF S+L+W++  LPKRGF FRTL+G+MS  +R  AL  F  DPPTTVFLLS+RSGAVGINLTQAN VF++EP LN ALE QAIGRV+RLGQ RPV V
Sbjct:   55 EPNSKSLVFSQFTSTLKWMQEELPKRGFSFRTLSGDMSMPKRAQALREFQSDPPTTVFLLSMRSGAVGINLTQANRVFIMEPALNPALEAQAIGRVHRLGQNRPVEV 161          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A1E7F8K5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8K5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.290e-40
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            D +SKSLVFSQFNS+LE+L+  LPK GFQFRTL+G+MS  QR  AL  F  DPPTTVFLLS+R+GAVGINLTQAN VFL+EP  N ALE QAIGRV+RLGQ R V +
Sbjct:   84 DVSSKSLVFSQFNSTLEYLQTELPKHGFQFRTLSGSMSMKQRAKALRDFQNDPPTTVFLLSMRAGAVGINLTQANRVFLMEPSFNPALEAQAIGRVHRLGQKREVNI 190          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S2CG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG02_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.300e-40
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333
            D TSK L+FSQF ++L WL++ LP  G  FRTLTG M++ QR  AL  F +DPPTTVFLLSVR+GAVGINLTQAN+VF+LEP+LN ALE QA+GRV+R+GQ R V V+  V
Sbjct:   25 DATSKCLIFSQFQATLTWLQQMLPAHGCSFRTLTGKMTQKQRARALRDFQEDPPTTVFLLSVRAGAVGINLTQANHVFILEPILNPALELQAVGRVHRMGQQRHVYVTKFV 135          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VRJ5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VRJ5_TETOB)

HSP 1 Score: 151 bits (381), Expect = 4.150e-40
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            DP+SK+LVFSQ+NS+LEWL+R LPK GF FRT+TG+M++  R  A+ AF  DPPTTVFLLS+RSGAVGINLT A++VFLLEP LN ALE+QAIGR +R+GQ R VTV
Sbjct:  605 DPSSKALVFSQYNSTLEWLQRRLPKEGFSFRTITGSMAQRARAKAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVFLLEPCLNPALEEQAIGRAWRMGQQRKVTV 711          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VTQ3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VTQ3_TETOB)

HSP 1 Score: 151 bits (381), Expect = 4.570e-40
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            DP+SK+LVFSQ+NS+LEWL+R LPK GF FRT+TG+M++  R  A+ AF  DPPTTVFLLS+RSGAVGINLT A++VFLLEP LN ALE+QAIGR +R+GQ R VTV
Sbjct: 1525 DPSSKALVFSQYNSTLEWLQRRLPKEGFSFRTITGSMAQRARAKAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVFLLEPCLNPALEEQAIGRAWRMGQQRKVTV 1631          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S2UI45_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI45_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.440e-39
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            +P +KSLVFSQF S+L W++  LPK GFQFRTL+G+M  ++R  AL  F  DPPTT+FLLS+R+GA GINLTQAN VFL+EP +N ALE QAIGRVYRLGQ + V +
Sbjct:   90 EPEAKSLVFSQFRSTLSWMQEELPKHGFQFRTLSGDMPMSKRACALRDFQNDPPTTIFLLSIRAGACGINLTQANRVFLMEPAMNPALEAQAIGRVYRLGQRKNVEI 196          
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VY86_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VY86_TETOB)

HSP 1 Score: 147 bits (372), Expect = 7.390e-39
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321
            DP+SK+LVF+Q+NS+LEWLK+ LP  GF FR+++G+M   QRTAA+  F KDPPTTVFLLSVRSGA GINLT AN+VFLLEP LN ALE+QAIGR +R+GQ R V V
Sbjct:  912 DPSSKALVFTQYNSTLEWLKKALPAAGFGFRSISGSMPLNQRTAAIKNFQKDPPTTVFLLSVRSGACGINLTAANHVFLLEPCLNPALEEQAIGRAWRMGQRREVVV 1018          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S9_ECTSI2.760e-6097.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW09_9PHAE1.790e-5995.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J7PDI8_9CHLO5.260e-4468.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0GC86_9STRA1.200e-4371.03Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7F8K5_9STRA2.290e-4071.03p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2CG02_9STRA3.300e-4064.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A383VRJ5_TETOB4.150e-4070.09Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A383VTQ3_TETOB4.570e-4070.09Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S2UI45_9STRA1.440e-3964.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A383VY86_TETOB7.390e-3969.16Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10034contigE-fasciculatus_F_contig10034:3205..4560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue8.3e-52
Seed eggNOG ortholog2880.D7G0S9
KEGG koko:K01259,ko:K15505,ko:K15711
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27,3.4.11.5
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10034.50.1prot_E-fasciculatus_F_contig10034.50.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10034 3205..4560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.5097926-CDS-E-fasciculatus_F_contig10034:3204..33091622927505.5097926-CDS-E-fasciculatus_F_contig10034:3204..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 3205..3309 -
1695995567.928431-CDS-E-fasciculatus_F_contig10034:3204..33091695995567.928431-CDS-E-fasciculatus_F_contig10034:3204..3309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 3205..3309 -
1622927505.5227108-CDS-E-fasciculatus_F_contig10034:3626..37311622927505.5227108-CDS-E-fasciculatus_F_contig10034:3626..3731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 3627..3731 -
1695995567.9393451-CDS-E-fasciculatus_F_contig10034:3626..37311695995567.9393451-CDS-E-fasciculatus_F_contig10034:3626..3731Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 3627..3731 -
1622927505.5331364-CDS-E-fasciculatus_F_contig10034:4419..45601622927505.5331364-CDS-E-fasciculatus_F_contig10034:4419..4560Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 4420..4560 -
1695995567.9495308-CDS-E-fasciculatus_F_contig10034:4419..45601695995567.9495308-CDS-E-fasciculatus_F_contig10034:4419..4560Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10034 4420..4560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10034.50.1

>prot_E-fasciculatus_F_contig10034.50.1 ID=prot_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFA
KDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLG
QTRPVTVSACVPAYWR*
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mRNA from alignment at E-fasciculatus_F_contig10034:3205..4560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10034.50.1 ID=mRNA_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10034:3205..4560- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCCCACCTCGAAGAGCCTGGTGTTCTCGCAGTTCAACTCTTCGCTTGA GTGGCTGAAGCGCACCCTGCCCAAGAGGGGCTTCCAGTTTCGCACTCTCA CGGGAAACATGTCCAGGACGCAGAGAACCGCCGCTCTCACGGTACGTTCC GCGAAATATGTGGTGCTGTAGAGGTCTTGCGGTGATGGATTGCAGCGGCG AGAGGTTGTGGCAGAGGTTGCGTGTGCAGTAACAGCACAGAAGCATGCGG CGGCAGAAGCGGGAGAAGTGGTGGCAGAAGTTGTCGTAGTGAAAGCTAAC AGACAAGCCGTAGACTTACCGTAGGTGGCAGACGTTGTCGTAGTGAAAGC GAATAGACAAGCCGTAGACTTGTTGTAGGTGGCAGACGTTGTCGTAGTGA AAACGCGAAGACTGTGTTGGTCCCATCTATTCCGGCGGCGGTTTGCAAGC TTTTCGGCGTATACACTTGACGTATCAGCCGGAGTCATACAAGAGGAAGG TTAACAGGAGCTTTCTTCAGTTTTTGTCTGTCTTGTTGCCCCACCTTTCC CCCTGCGCGTCAGCCACGAACCCCGAATCTCAGGTGGCAAGCGTTGTCGT AGTGAAAGCGCAAGCACGCGTGATTCTTAGCCACAACCCTCATTCATCTC TACAACCCAGTACATGCACACCCCGTGGCTCGTGAACGCCCGACAAGCAA GCTCACGTGTTCGTTATCCTACCCGCCTTAGCCCGGTGTCTCTTTACTCA GCCCCCTCGCGATGGGCTTCGACCGCAGTACAGGCATGAGTGCCCCCTAC CCGTCTATTTTTCTCTGTGCGAATCACAGGCGTTCGCGAAGGACCCTCCA ACGACGGTGTTCCTTCTGTCCGTGCGGTCGGGAGCCGTGGGGATCAACCT CACGCAGGCCAACAACGTCTTCCTGCTCGAGCCGGTACTTGCTACGATCT TTTGAGGCCATCTTGCTTGCCGGTTGATTTCATGCCTCCGCTCTTTGGGT TGGATGTTGTGTTCGGTTGTACGGTTTTTGCTGCGTTTTGGTGGTTGAGT CGTTTCTTCTTTTCTATCGGTCGTTTCGCGTGTGGAGAGCTGGAAGTAGA ATCCGAACGTCGCCGGGCGGGCGCTGTACTTGTTTCCATGGGTGTTCCGA GTCACGCTTGCTGATTCCCTTCATGCTTATCCTCCTTGCTCTGCTCCTGC TGCTGCGTTCCCAACGGCCGCGGCAAACCCGTGTTTCTTGCGGTTCTTTA GTTGCTCAACCTGGCCCTGGAGAAGCAGGCGATCGGGAGGGTCTACCGAC TGGGACAGACCCGCCCTGTCACGGTAAGCGCGTGCGTGCCTGCTTATTGG CGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10034:3205..4560-

>mRNA_E-fasciculatus_F_contig10034.50.1 ID=mRNA_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10034:3205..4560- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCCCACCTCGAAGAGCCTGGTGTTCTCGCAGTTCAACTCTTCGCTTGA
GTGGCTGAAGCGCACCCTGCCCAAGAGGGGCTTCCAGTTTCGCACTCTCA
CGGGAAACATGTCCAGGACGCAGAGAACCGCCGCTCTCACGGACCCCACC
TCGAAGAGCCTGGTGTTCTCGCAGTTCAACTCTTCGCTTGAGTGGCTGAA
GCGCACCCTGCCCAAGAGGGGCTTCCAGTTTCGCACTCTCACGGGAAACA
TGTCCAGGACGCAGAGAACCGCCGCTCTCACGGCGTTCGCGAAGGACCCT
CCAACGACGGTGTTCCTTCTGTCCGTGCGGTCGGGAGCCGTGGGGATCAA
CCTCACGCAGGCCAACAACGTCTTCCTGCTCGAGCCGGCGTTCGCGAAGG
ACCCTCCAACGACGGTGTTCCTTCTGTCCGTGCGGTCGGGAGCCGTGGGG
ATCAACCTCACGCAGGCCAACAACGTCTTCCTGCTCGAGCCGTTGCTCAA
CCTGGCCCTGGAGAAGCAGGCGATCGGGAGGGTCTACCGACTGGGACAGA
CCCGCCCTGTCACGGTAAGCGCGTGCGTGCCTGCTTATTGGCGTTGATTG
CTCAACCTGGCCCTGGAGAAGCAGGCGATCGGGAGGGTCTACCGACTGGG
ACAGACCCGCCCTGTCACGGTAAGCGCGTGCGTGCCTGCTTATTGGCGTT
GA
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