mRNA_E-fasciculatus_F_contig106.476.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig106.476.1
Unique NamemRNA_E-fasciculatus_F_contig106.476.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE)

HSP 1 Score: 615 bits (1587), Expect = 5.970e-219
Identity = 310/330 (93.94%), Postives = 314/330 (95.15%), Query Frame = 3
Query:   93 MPRRALPACVLSSSPSRLRCLAVLTAAWGSHGFRSISSGNGGTRVRAAT--AATNEVGEVQVEERPWLGNGPDPMASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            MPRRA PA VLSSSP RLRCL VLTAAWGSHGFRSISS NGGTRV  AT  AATNEV EVQVEERPWLGNGPDPMASTGK RPGTSASLGAA VGE GGKGKGVA EEMWLNGPFNAPVPPGPL++LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSL LADRCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:    1 MPRRAQPAGVLSSSPGRLRCLTVLTAAWGSHGFRSISSCNGGTRVHVATTAAATNEVREVQVEERPWLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI)

HSP 1 Score: 498 bits (1281), Expect = 1.290e-173
Identity = 246/256 (96.09%), Postives = 250/256 (97.66%), Query Frame = 3
Query:  309 MASTGKARPGTSASLGAAAVGEAGGKGKGVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            MASTG+ RPGTSASLGAA VGEAGGKGKGVA EEMWLNGPFNAPVPPGPLE+LFVD+EIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVA+VHGVL ADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGT DSLALA RCLLHAHTLCLRHPKTGERTMFTAPCEF
Sbjct:    1 MASTGQVRPGTSASLGAAVVGEAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA)

HSP 1 Score: 225 bits (574), Expect = 2.300e-67
Identity = 119/232 (51.29%), Postives = 150/232 (64.66%), Query Frame = 3
Query:  396 VAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDR-----AADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            ++PEE W+          GP++V++ DD I+VCNKPS LL VPG   KD L +R A++ G  R+D+M+VHRLD ATSG V+ ARTD AL+ L+  FR R+V K Y A+V+G ++ D GEV  P+ ++   PPL +++   GKP  T W VL R      AD TRV L PV+GRSHQLRLHM  +GHPILGD  Y    + ALA RCLLHA TL  RHP TGE   F  P EF
Sbjct:    3 LSPEERWMR-------VAGPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 2.190e-60
Identity = 110/209 (52.63%), Postives = 145/209 (69.38%), Query Frame = 3
Query:  456 LEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            +EVL+ DD +V+  KP+DLL VPGR    +D L  R   E    R    IVHRLD ATSG +++A    + ++L+RQF +R+ RKRY+A+V G L   +G V+LPL  +    P  MV+ + GKP+LT++R+LD+A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T  +LA ADR  LHA  L +RHP +GER  FTAPC F
Sbjct:    2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A291HLR0_9GAMM (Pseudouridine synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM)

HSP 1 Score: 206 bits (523), Expect = 7.450e-60
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 3
Query:  429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            ++ P+ P   EVL+ D+ ++V NKPS LL VPGR  I +DSL+ R A      +V    VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A VHG L  D G +DLPLC +    P HMV+ EHGKP+LT WR L R  DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + ++LA+A    LHA  L  RHP++ +   F+AP  F
Sbjct:    6 YDPPMDPQ-FEVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLSYRVARVYPGVQV----VHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: UPI000371F359 (RluA family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359)

HSP 1 Score: 204 bits (520), Expect = 1.880e-59
Identity = 109/210 (51.90%), Postives = 144/210 (68.57%), Query Frame = 3
Query:  453 PLEVLFVDDEIVVCNKPSDLLCVPGRIEK--DSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            PL+++ VDD+I+V NKP+ LL VPGR E+  D LATRA  E    R    IVHRLDM TSG +IMAR   AL+ L RQF +R+  K Y A+++G L+ DEGEVDLPL  +    P H V+FE+GKP+ T+++V++R    TRV L PV+GRSHQLR+HM ++GH I+GD+ Y   ++  LADR  LHA  L + HP++GE   FTAP  F
Sbjct:   15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A371RL31_9PROT (RNA pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT)

HSP 1 Score: 201 bits (512), Expect = 2.610e-58
Identity = 102/207 (49.28%), Postives = 136/207 (65.70%), Query Frame = 3
Query:  456 LEVLFVDDEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            L+VL+ DD ++V NK + LL VPG + +DSL TRAA   G+     ++ HRLDMATSG ++M R    L  +  QF +RQ  KRY+A+V G ++ D+G VDLP+  +    PL M+  E G+P++T W VL R  D+TR+ L P++GRSHQLRLHM  +GHPILGD +Y   ++ A + R LLHA  L L HP  GER  FTAPC F
Sbjct:   15 LDVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQFEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A233RBH1_9GAMM (Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM)

HSP 1 Score: 201 bits (511), Expect = 4.160e-58
Identity = 108/218 (49.54%), Postives = 141/218 (64.68%), Query Frame = 3
Query:  429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            ++ PV P   ++L+ DD ++V NKPS LL VPGR  +  DSL+ R +      +V    VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A VHG  S DEG +DLPLC +    P HMV+ EHGK +LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y   ++L +A    LHA  L  RHP+   R  FTAP  F
Sbjct:    6 YDPPVDPQ-FDILYQDDSLIVLNKPSGLLSVPGRDPVHFDSLSLRVSRVFPAVQV----VHRLDMATSGVIVMALNPKAHRELSRQFRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPF 218          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: A0A2P7QL36_9GAMM (Pseudouridine synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM)

HSP 1 Score: 200 bits (509), Expect = 8.740e-58
Identity = 106/208 (50.96%), Postives = 139/208 (66.83%), Query Frame = 3
Query:  459 EVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            EVL+ D+ ++V NKPS LL VPGR  + +DSL+ R A        D  +VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A V+G  +AD G VDLPLC +    P HMV+ EHGKP+LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + ++L +A +  LHA  L  RHP+      FTAP  F
Sbjct:   15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218          
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Match: UPI001AA08F5F (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Oceanisphaera sp. DM8 TaxID=2818389 RepID=UPI001AA08F5F)

HSP 1 Score: 199 bits (505), Expect = 3.200e-57
Identity = 110/218 (50.46%), Postives = 139/218 (63.76%), Query Frame = 3
Query:  429 FNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGR--IEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALADRCLLHAHTLCLRHPKTGERTMFTAPCEF 1076
            +N P+ P   E+L+ DD I+V NKPS LL VPGR  +  DSLA R A           IVHRLDMATSG +++A    A  +L+RQFRER+  KRY A V+G  + D G VD+PLC +    P  MVN+E+GK +LT WR L R ADR+ VEL P++GRSHQLR+HM ++GH ILGD+ Y   ++L +A   LLHA  L   HP T E   FTAP  F
Sbjct:    6 YNPPMDPA-FEILYQDDSIIVLNKPSGLLSVPGRERVHHDSLALRVA----RVYPTAKIVHRLDMATSGVIVIALHAKAHSELSRQFRERETAKRYYAWVYGRPAEDAGSVDVPLCCDWPNRPRQMVNYEYGKAALTHWRCLRRLADRSLVELTPITGRSHQLRVHMKSLGHVILGDNLYAEGEALTMAPHLLLHASELAFYHPDTHEWLTFTAPAPF 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig106.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN60_9PHAE5.970e-21993.94PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LR37_ECTSI1.290e-17396.09Pseudouridylate synthases, 23S RNA-specific n=1 Ta... [more]
A0A836CD05_9STRA2.300e-6751.29Pseudouridylate synthase, 23S RNA-specific n=1 Tax... [more]
A0A369WRJ6_9GAMM2.190e-6052.63Pseudouridine synthase n=1 Tax=Motiliproteus coral... [more]
A0A291HLR0_9GAMM7.450e-6050.92Pseudouridine synthase n=4 Tax=Zobellella denitrif... [more]
UPI000371F3591.880e-5951.90RluA family pseudouridine synthase n=1 Tax=Kordiim... [more]
A0A371RL31_9PROT2.610e-5849.28RNA pseudouridine synthase n=1 Tax=Parvularcula ma... [more]
A0A233RBH1_9GAMM4.160e-5849.54Pseudouridine synthase n=4 Tax=Oceanimonas TaxID=1... [more]
A0A2P7QL36_9GAMM8.740e-5850.96Pseudouridine synthase n=1 Tax=Zobellella taiwanen... [more]
UPI001AA08F5F3.200e-5750.46bifunctional tRNA pseudouridine(32) synthase/23S r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig106contigE-fasciculatus_F_contig106:3975..7420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score505.4
Seed ortholog evalue2e-140
Seed eggNOG ortholog2880.D8LR37
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-06_004490.1
Exons6
Model size1528
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig106.476.1prot_E-fasciculatus_F_contig106.476.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig106 4067..6971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.2574131-UTR-E-fasciculatus_F_contig106:3974..40661622927557.2574131-UTR-E-fasciculatus_F_contig106:3974..4066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig106 3975..4066 +
1695995594.3988202-UTR-E-fasciculatus_F_contig106:3974..40661695995594.3988202-UTR-E-fasciculatus_F_contig106:3974..4066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig106 3975..4066 +
1622927557.3599458-UTR-E-fasciculatus_F_contig106:6971..74201622927557.3599458-UTR-E-fasciculatus_F_contig106:6971..7420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig106 6972..7420 +
1695995594.4687846-UTR-E-fasciculatus_F_contig106:6971..74201695995594.4687846-UTR-E-fasciculatus_F_contig106:6971..7420Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig106 6972..7420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.2760303-CDS-E-fasciculatus_F_contig106:4066..44321622927557.2760303-CDS-E-fasciculatus_F_contig106:4066..4432Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 4067..4432 +
1695995594.4115708-CDS-E-fasciculatus_F_contig106:4066..44321695995594.4115708-CDS-E-fasciculatus_F_contig106:4066..4432Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 4067..4432 +
1622927557.292345-CDS-E-fasciculatus_F_contig106:4843..49411622927557.292345-CDS-E-fasciculatus_F_contig106:4843..4941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 4844..4941 +
1695995594.4215238-CDS-E-fasciculatus_F_contig106:4843..49411695995594.4215238-CDS-E-fasciculatus_F_contig106:4843..4941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 4844..4941 +
1622927557.3068225-CDS-E-fasciculatus_F_contig106:5425..55491622927557.3068225-CDS-E-fasciculatus_F_contig106:5425..5549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 5426..5549 +
1695995594.4312048-CDS-E-fasciculatus_F_contig106:5425..55491695995594.4312048-CDS-E-fasciculatus_F_contig106:5425..5549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 5426..5549 +
1622927557.3232925-CDS-E-fasciculatus_F_contig106:5863..60211622927557.3232925-CDS-E-fasciculatus_F_contig106:5863..6021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 5864..6021 +
1695995594.4429379-CDS-E-fasciculatus_F_contig106:5863..60211695995594.4429379-CDS-E-fasciculatus_F_contig106:5863..6021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 5864..6021 +
1622927557.3359232-CDS-E-fasciculatus_F_contig106:6480..65531622927557.3359232-CDS-E-fasciculatus_F_contig106:6480..6553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 6481..6553 +
1695995594.4521506-CDS-E-fasciculatus_F_contig106:6480..65531695995594.4521506-CDS-E-fasciculatus_F_contig106:6480..6553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 6481..6553 +
1622927557.3492117-CDS-E-fasciculatus_F_contig106:6803..69711622927557.3492117-CDS-E-fasciculatus_F_contig106:6803..6971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 6804..6971 +
1695995594.460641-CDS-E-fasciculatus_F_contig106:6803..69711695995594.460641-CDS-E-fasciculatus_F_contig106:6803..6971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 6804..6971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig106.476.1

>prot_E-fasciculatus_F_contig106.476.1 ID=prot_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=329bp
MPRRALPACVLSSSPSRLRCLAVLTAAWGSHGFRSISSGNGGTRVRAATA
ATNEVGEVQVEERPWLGNGPDPMASTGKARPGTSASLGAAAVGEAGGKGK
GVAPEEMWLNGPFNAPVPPGPLEVLFVDDEIVVCNKPSDLLCVPGRIEKD
SLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRER
QVRKRYVAMVHGVLSADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWR
VLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLALAD
RCLLHAHTLCLRHPKTGERTMFTAPCEF*
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mRNA from alignment at E-fasciculatus_F_contig106:3975..7420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig106.476.1 ID=mRNA_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:3975..7420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTGAACCTGGAGGCTTGCTGCCTTGCTGCCGCCCTCGTCATTGACGTA CACGGCTTGAGCTGCGAGTTTATCATAGTTTTCAAGACGGCAATGCCTCG TAGGGCACTTCCAGCATGCGTCCTCTCCTCCTCGCCGAGTCGTTTGCGTT GCCTGGCCGTGCTGACGGCCGCGTGGGGGTCCCACGGCTTTCGATCAATC AGCAGTGGCAACGGCGGCACGCGCGTCCGTGCCGCTACGGCTGCCACGAA TGAAGTAGGGGAGGTGCAGGTGGAGGAGAGGCCATGGCTTGGCAATGGCC CGGATCCGATGGCAAGCACAGGAAAGGCTCGACCAGGCACGAGCGCTTCC CTGGGAGCAGCTGCTGTAGGGGAGGCGGGAGGAAAGGGCAAGGGCGTCGC GCCCGAGGAGATGTGGCTCAACGGCCCGTTCAATGCTCCCGTGCCGCCAG GACCACTGGTGAGTGATGACCCGGGGAAGGGTACCTCGTAGACGAAGGCA GCGCTCTTCCAAAAAGTATCATCGCTGTCAGCTACCGATGGTGCGATCAC CTCAAGTAGGTGGCCATGCTGTACACCATGTTCTGAAAAAACGCGGCGTG TCTTTCACCCACCGATCCCCGAAACGCGCGTTGCTACTGCAACATGTACC GCAATCATGCGATCTCGGTCACATGCTGAAAACGTATGCGCGACCCTGTT GCATTCGACCTCCGCAGTGCTGAGCTATGTGTCGAGGCATCACATCCAGC GCTTTTGGTTGGATTCTTGGTGCTGCCGCTGTTATTCTGCCTTCGAGAGC AACGTATGCATGCGTACTCCACATGTCCATGCTACACGTGTTTCGAACTT ACGCGCGCGGACGCCCCAGGAGGTTTTGTTCGTGGACGATGAGATAGTGG TCTGTAACAAGCCAAGTGATCTTCTCTGCGTTCCGGGGCGGATCGAGAAG GACTCTCTTGCCACAAGGTTCGTCCAGTTAGTTATATGTAGCTCGATTCT CGCGCATCAGACCTACAGCAGTATTAGGTGTGTACCGGATCCTTGTAATT GCCACGCCAATGTTGCGGACGAAGTGCTGTTTGTATGCTAATCATGCAAG AGCTCAAGATGGCGCTGCACATGGAATTTGTCGCCAGCGTCAAGGACGTG ATTGTTTCAGTAGTAGTGGCAGATTTTTAGGTGCTGTGGGTGCAATCCGG AGTTTTTGGTACCAAACGAAGCCCAAGGAGGCCCAGCGAAACTTCTATCC CGAATCTTGGTGGACTGCCTTTGGAAATAGGGAGGCGTGAAGTGCTGAAA AAGGTCGTTCATTATATCGCTAATTTCCCACTGACCACTCGTGCCTAGGC CTCTTTAGTCGAGTATATTCAAGTCGAATAATGAAATGCACCGTTTGGGA GGCCGACGTTCCATTTTATGTTCCGGCTGTCACTTGCGGGTGCTTTTGAA GGGCTGCCCTGGAGCTGGGACACTACCGGGTGGACAGAATGATCGTGCAC CGGCTAGACATGGCGACTTCTGGCTGCGTGATCATGGCCCGCACGGATGC AGCTCTCAAGGACCTCAACCGGCAGGTGTACTATTTTTTTATATATTCAT GGGAAGTCGGTTGTGAGAATGCCAAACTCCGCATCTTCTTCTGCACGCGG CGCAAGAGTGAGTCTCTCGTGTGGCCAAGGACCTATTCCGTCGCGCGCAC TGAGAAGTACGTTTGTTTTTGACCGAATCCCCATGATATCCACTTCCTTC TATCTTCAATTTTTGAATGCATGTGCTCTGTACGCGCCGCGTGTGGATGG ATGCATCGTGTGCTGCTGACCGCGTGTGCTGCCACCTGTGTGTAAACCAC CCCTCCGTCTGTCTTCTCCATTACCGCGTTGAATGCTAGTTTCGAGAGCG CCAAGTGCGGAAGCGCTACGTCGCGATGGTGCACGGTGTCCTCTCGGCGG ACGAAGGGGAGGTCGACCTGCCGCTTTGCAGAAATAGGGGCTGCCCGCCG CTCCACATGGTCAATTTCGAGCACGGGAAGCCGTCGCTCACAAAATGGTA AGTGCGAGGAAGTCCCGCGATTGACAATAGTAGCGATTGTGCGATGAACG ACGTGACAGACGGGGGAGGTTCATTGGTACAGCTAACCTAGCATTACTAA AAAGTGGAGGTCCTTCGAGTCGTAGCTACAGATAATTTGGCGCACTGTAT TAATCACTTGAGGAGTAATTGTGAGCTGCTCGCGTGGTCGCGCAGCACCT GTGAGAACCTCTGCCTGTGATGGATAGAGGTGCATGTTTTTACCGCCTTA GTTTTTCACGGGCTGTGTAACGCATGCGATGGGATAGGACCTGGCTTCAT CAACCACGTGGCAAACGCAAGATATAACGTGATGATGACCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCTCCCTCCAACAATGCTTCCTATGCGTGACGA CGGCGTTTCTCTGTGATGTGTTTGCTCTTCAACAACACGCATCCGACGTT CACAAGGCGAGTCCTGGATAGGGCTGCAGACCGGACGAGAGTGGAGCTCA TTCCCGTATCGGGCCGTTCGCACCAACTGGTGAGCCGGAGGAAGAGCGAT TGACACCGCAGACTCATACACATATTTCCCGATATCGAACTTTTGTAGAC GTGGTCGCCTCTGATGCCATGTTTCACCCACCGTCTTTTTTTTCATGGCT GCTTCTTCCAACAAGGGCTACCTTGCGGGAAACCTTCTGGCCGAATTTTC GACACATCCCATGCCTACCAACCAGGAAGATGACTGGCGTCCCATCTTCG CTCTTCCCTCTTTCCGTCCTCCTGGACAGCGACTTCATATGAATGCAATA GGTCATCCAATCCTGGGCGACCACTTCTACGGCACCAAGGACTCTCTCGC TCTCGCGGACCGGTGCCTGCTGCACGCGCACACGCTGTGCCTTAGACACC CGAAAACGGGGGAGAGGACCATGTTTACCGCTCCTTGCGAATTTTGAACT TTGGAGCTTGAGCGCGGTTTGTTCGCCCAGGGTCCCCCTGACTTAAAGGG TGTGTGAAGGAAAGCAGCCCACCCAGGCCCCGTTGTTGTTGGTTTCCTGG TTGGGCTTGTACCTGGTGTTGTGTGCGTTCAACGTGGTGATACCTTCTGG TTGGGATTGTATTATTTTTCAAGTCCTACCCGAATGCCAACGGTTCCCGC AATTTGCGTGTGTGCAAGCTATGTAGTGTCGTCCGTGCTTCTTCCCGACG CATACTTGCGCGCATTTGTAGAGCTCGTGTACCGAATCGGCACTCCTGCT TCATGGTTTCGTCCGCTGCCGTTGGGAAATCGTCGGGGGCCTCTTCAGAC TATGCAGGGTTCATAATTTCTACGCACCGCTGTCCATACAAATACAACCA ATTTGCACTCATCTCTCTTGCGTTGGTGTTGGGGCGTGCGTTGTCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig106:3975..7420+

>mRNA_E-fasciculatus_F_contig106.476.1 ID=mRNA_E-fasciculatus_F_contig106.476.1|Name=mRNA_E-fasciculatus_F_contig106.476.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:3975..7420+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTCGTAGGGCACTTCCAGCATGCGTCCTCTCCTCCTCGCCGAGTCG
TTTGCGTTGCCTGGCCGTGCTGACGGCCGCGTGGGGGTCCCACGGCTTTC
GATCAATCAGCAGTGGCAACGGCGGCACGCGCGTCCGTGCCGCTACGGCT
GCCACGAATGAAGTAGGGGAGGTGCAGGTGGAGGAGAGGCCATGGCTTGG
CAATGGCCCGGATCCGATGGCAAGCACAGGAAAGGCTCGACCAGGCACGA
GCGCTTCCCTGGGAGCAGCTGCTGTAGGGGAGGCGGGAGGAAAGGGCAAG
GGCGTCGCGCCCGAGGAGATGTGGCTCAACGGCCCGTTCAATGCTCCCGT
GCCGCCAGGACCACTGATGCCTCGTAGGGCACTTCCAGCATGCGTCCTCT
CCTCCTCGCCGAGTCGTTTGCGTTGCCTGGCCGTGCTGACGGCCGCGTGG
GGGTCCCACGGCTTTCGATCAATCAGCAGTGGCAACGGCGGCACGCGCGT
CCGTGCCGCTACGGCTGCCACGAATGAAGTAGGGGAGGTGCAGGTGGAGG
AGAGGCCATGGCTTGGCAATGGCCCGGATCCGATGGCAAGCACAGGAAAG
GCTCGACCAGGCACGAGCGCTTCCCTGGGAGCAGCTGCTGTAGGGGAGGC
GGGAGGAAAGGGCAAGGGCGTCGCGCCCGAGGAGATGTGGCTCAACGGCC
CGTTCAATGCTCCCGTGCCGCCAGGACCACTGGAGGTTTTGTTCGTGGAC
GATGAGATAGTGGTCTGTAACAAGCCAAGTGATCTTCTCTGCGTTCCGGG
GCGGATCGAGAAGGACTCTCTTGCCACAAGGAGGTTTTGTTCGTGGACGA
TGAGATAGTGGTCTGTAACAAGCCAAGTGATCTTCTCTGCGTTCCGGGGC
GGATCGAGAAGGACTCTCTTGCCACAAGGGCTGCCCTGGAGCTGGGACAC
TACCGGGTGGACAGAATGATCGTGCACCGGCTAGACATGGCGACTTCTGG
CTGCGTGATCATGGCCCGCACGGATGCAGCTCTCAAGGACCTCAACCGGC
AGGGCTGCCCTGGAGCTGGGACACTACCGGGTGGACAGAATGATCGTGCA
CCGGCTAGACATGGCGACTTCTGGCTGCGTGATCATGGCCCGCACGGATG
CAGCTCTCAAGGACCTCAACCGGCAGTTTCGAGAGCGCCAAGTGCGGAAG
CGCTACGTCGCGATGGTGCACGGTGTCCTCTCGGCGGACGAAGGGGAGGT
CGACCTGCCGCTTTGCAGAAATAGGGGCTGCCCGCCGCTCCACATGGTCA
ATTTCGAGCACGGGAAGCCGTCGCTCACAAAATGTTTCGAGAGCGCCAAG
TGCGGAAGCGCTACGTCGCGATGGTGCACGGTGTCCTCTCGGCGGACGAA
GGGGAGGTCGACCTGCCGCTTTGCAGAAATAGGGGCTGCCCGCCGCTCCA
CATGGTCAATTTCGAGCACGGGAAGCCGTCGCTCACAAAATGGCGAGTCC
TGGATAGGGCTGCAGACCGGACGAGAGTGGAGCTCATTCCCGTATCGGGC
CGTTCGCACCAACTGGCGAGTCCTGGATAGGGCTGCAGACCGGACGAGAG
TGGAGCTCATTCCCGTATCGGGCCGTTCGCACCAACTGCGACTTCATATG
AATGCAATAGGTCATCCAATCCTGGGCGACCACTTCTACGGCACCAAGGA
CTCTCTCGCTCTCGCGGACCGGTGCCTGCTGCACGCGCACACGCTGTGCC
TTAGACACCCGAAAACGGGGGAGAGGACCATGTTTACCGCTCCTTGCGAA
TTTTGACGACTTCATATGAATGCAATAGGTCATCCAATCCTGGGCGACCA
CTTCTACGGCACCAAGGACTCTCTCGCTCTCGCGGACCGGTGCCTGCTGC
ACGCGCACACGCTGTGCCTTAGACACCCGAAAACGGGGGAGAGGACCATG
TTTACCGCTCCTTGCGAATTTTGA
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