mRNA_E-fasciculatus_F_contig106.475.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig106.475.1
Unique NamemRNA_E-fasciculatus_F_contig106.475.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig106.475.1 vs. uniprot
Match: D8LR36_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 8.180e-107
Identity = 180/207 (86.96%), Postives = 187/207 (90.34%), Query Frame = 1 
Query:  118 MVLRRSLACAFAGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSATIAGAAPRAPLVARRRSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKINPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAPSFLQLSVAMIMSLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAIEALEEEQ 738
            MV RRSLACA   LVLLGIVDGF+APAFIP ATAGARVK PVASS TIAGAA RAP VARR SAL MTANKAPD+T I NAAPLTFAAGCSAVA AVA+I+PHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMR SSEFASLLGKL PS+LQLSVAMIMSLGTSSLVIG AN  QL I+GI+LGITLYNAIVLEPSAIEALEEEQ
Sbjct:    1 MVRRRSLACA---LVLLGIVDGFIAPAFIPPATAGARVKLPVASSGTIAGAARRAPFVARRSSALTMTANKAPDRTAIANAAPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204
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BLAST of mRNA_E-fasciculatus_F_contig106.475.1 vs. uniprot
Match: A0A6H5LKX2_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 2.840e-104
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 1 
Query:  118 MVLRRSLACAFAGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSA---TIAGAAPRAPLVARRRSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKINPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAPSFLQLSVAMIMSLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAIEALEEEQ 738
            MVLR SLACA   LVLLGIVDGF+APAFIP ATAGARVK PVASSA   TIAGAAPRAPLV RR  AL MTANKAPD+T+I NA PLTFAAGCSAVA AVA+I+PHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMR SSEFASLLGKL PS+LQLSVAMIMSLGTSSLVIG AN  QL I+GI+LGITLYNAIVLEPSA+EALEEEQ
Sbjct:    1 MVLRGSLACA---LVLLGIVDGFIAPAFIPPATAGARVKLPVASSAPTATIAGAAPRAPLVDRRSRALTMTANKAPDQTVIANAVPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQ 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig106.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR36_ECTSI8.180e-10786.96DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LKX2_9PHAE2.840e-10485.24DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig106contigE-fasciculatus_F_contig106:243..3825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-06_004500.1
Exons7
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.1274886-CDS-E-fasciculatus_F_contig106:242..3411622927557.1274886-CDS-E-fasciculatus_F_contig106:242..341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 243..341 -
1695995594.303722-CDS-E-fasciculatus_F_contig106:242..3411695995594.303722-CDS-E-fasciculatus_F_contig106:242..341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 243..341 -
1622927557.1425903-CDS-E-fasciculatus_F_contig106:570..6401622927557.1425903-CDS-E-fasciculatus_F_contig106:570..640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 571..640 -
1695995594.3215694-CDS-E-fasciculatus_F_contig106:570..6401695995594.3215694-CDS-E-fasciculatus_F_contig106:570..640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 571..640 -
1622927557.156724-CDS-E-fasciculatus_F_contig106:1419..15621622927557.156724-CDS-E-fasciculatus_F_contig106:1419..1562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 1420..1562 -
1695995594.3383973-CDS-E-fasciculatus_F_contig106:1419..15621695995594.3383973-CDS-E-fasciculatus_F_contig106:1419..1562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 1420..1562 -
1622927557.1720314-CDS-E-fasciculatus_F_contig106:2385..24691622927557.1720314-CDS-E-fasciculatus_F_contig106:2385..2469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 2386..2469 -
1695995594.3542917-CDS-E-fasciculatus_F_contig106:2385..24691695995594.3542917-CDS-E-fasciculatus_F_contig106:2385..2469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 2386..2469 -
1622927557.1895537-CDS-E-fasciculatus_F_contig106:2684..27731622927557.1895537-CDS-E-fasciculatus_F_contig106:2684..2773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 2685..2773 -
1695995594.363921-CDS-E-fasciculatus_F_contig106:2684..27731695995594.363921-CDS-E-fasciculatus_F_contig106:2684..2773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 2685..2773 -
1622927557.2000225-CDS-E-fasciculatus_F_contig106:3546..36931622927557.2000225-CDS-E-fasciculatus_F_contig106:3546..3693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 3547..3693 -
1695995594.3731458-CDS-E-fasciculatus_F_contig106:3546..36931695995594.3731458-CDS-E-fasciculatus_F_contig106:3546..3693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 3547..3693 -
1622927557.2151272-CDS-E-fasciculatus_F_contig106:3719..38251622927557.2151272-CDS-E-fasciculatus_F_contig106:3719..3825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 3720..3825 -
1695995594.3847191-CDS-E-fasciculatus_F_contig106:3719..38251695995594.3847191-CDS-E-fasciculatus_F_contig106:3719..3825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig106 3720..3825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig106.475.1prot_E-fasciculatus_F_contig106.475.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig106 243..3825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig106.475.1

>prot_E-fasciculatus_F_contig106.475.1 ID=prot_E-fasciculatus_F_contig106.475.1|Name=mRNA_E-fasciculatus_F_contig106.475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=246bp
PHTPTYTQHQHPGRQKEIQAPAPGRCLLLEYFAAVFNSVMVLRRSLACAF
AGLVLLGIVDGFVAPAFIPAATAGARVKSPVASSATIAGAAPRAPLVARR
RSALAMTANKAPDKTIITNAAPLTFAAGCSAVAGAVAKINPHAAAFVQLV
CLSIWLGMSVYATFIWPVITGLNMRHSSEFASLLGKLAPSFLQLSVAMIM
SLGTSSLVIGRANGVQLGIIGISLGITLYNAIVLEPSAIEALEEEQ
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mRNA from alignment at E-fasciculatus_F_contig106:243..3825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig106.475.1 ID=mRNA_E-fasciculatus_F_contig106.475.1|Name=mRNA_E-fasciculatus_F_contig106.475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3583bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:243..3825- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCACACCCCCACATACACACAACACCAGCACCCCGGGAGACAGAAAGA
AATCCAGGCACCAGCACCAGGCCGGTGTCTTCTCCTTGAGTACTTCGCTG
CTGTTTGTTGCAAGCAAACGCAGTGCTGCGAGTCAACTCTGTCATGGTTC
TCAGGAGGAGCCTCGCGTGTGCCTTTGCTGGTCTGGTTCTCCTTGGCATC
GTCGATGGATTCGTCGCGCCTGCTTTCATCCCGGCAGCGACAGCGGGGGC
ACGGGTCAAGTCACCGGTGGCAAGCTCAGGTAAACCAACGTGTTCTGGCG
CGGGGAGAGTTAGTAGTGAAAGGAGGGGAGGGGGGGCATGTTCATGTGAA
AGATGGAAATGTTCCCGTTCACGACCGATCGGTCGATGACCACACCACAA
GTTCAAACTTCAAGCCGGCGTGGGTGCTTGCTACAATCTGTTGCAGGTCT
GTAGACTTCCTTTCTAAGCCGAACACGTGGCCACCTCCCTTTCTGACGGG
CTTGGTGCCTACTGCTGGCAGAGAGCGACAGAGAGGGTGTGAGAGCGACG
TACCAGATAGAATTGTGCCGGCGAAGTCGTGTTGCCACAGGTATCAGAAC
TGAACCTGAACTGAACCAGCGGTCTTGACACACCAGTCACACCAGCACAC
CAGGTTCCTTACCCCGTGTTGCCTCACACGCGTTGCAATTTGTTAATCTG
GTGAAAGTTCAGAAGCGTGGGGCAAAACATAGGTTTCCATTCGTCAATAT
GGTGGCGTCGGACCAAGCGCTTGTAGGTTCTTAATTTTTTCTTCAGAGGA
TCAGAAAGAGCCAGCCCAGATTTCCTACTCGCCACGGAAACGACGTTGTA
AAAGGCAGCGGTGAAACTGACCGTGGCGTGCTCGACCTTGTCGATTGAAA
GCCTTGCACACCCGCAGTCAAAGCGCCAAACGCTATTTGGCCACAACATC
AGTGTTGCAGTGGCTCACCCCCTCGAAAGGCATCAACAATGTCCCCGGCT
CCTTACGGTATTCACTCAACTGAAACTGTGGGTTCTGGTTCAGCACCAAC
AGCAACCATAGCCGGAGCGGCACCGAGGGCTCCGTTGGTCGCCAGGAGAA
GAAGCGCTCTAGCAATGACTGCCAACAAGGCACCGGACAAGGTACGCGTG
TTGTTGTATACGCGGCGAATATATCGGTATGTGTCTCAGGCGTCTGTTAC
GTTCGTGGTAGGTTGAACTGGTATAGGTCAATTCGACGAACGCATACCCG
GAGAGTTTCAGCGCGGTCTCACCCCTCCTCTGTGTCTGCATCTCTCTCCA
TCGTGTGTGCTTCTCTGGTTGCCGTGATGCGCATCGTCACGGCACCGAGG
GCGCAGACCATCATAACCAACGCCGCGCCCTTAACCTTCGCCGCGGGGTG
CTCGGCCGTCGCCGGCGCGGTTGCTAAGATAAACCCACACGTGAGTGCGA
GGATGGGCCCCGCTCCCCGTGGTATGGATTCATCTTATGTATGCAGATGC
TTTCTGAACTAAGGGCTCTCGTAGTACCTACAGAGGGCATCGCCGCTGCA
TGCTGCTGGAGTGTACGCTTCACATGTCACGCGGGTGTTGTGATTCGTTG
GTATCGTTTCGGCAACGGCTCTCGCCCTCCTCCGACAACAGATCTGGCGC
AGATCCATACCAGCTATGCTATGTTGGCACGCAGCAGCACCGTGGGTTTG
TTTACCTTAACGTTTACTCGGCATCGAAAAAGTGATATGGTAGGCGTTTG
TGCCGACCCACTCCCCTCCATTTGTCTCCATACACATGCTCGCGTAGATA
GGTGCAGGGGTATCGAACCAACGTGCATGTATGTGTAGGCCCTGTTTTAG
ATTGCCTCAAGCCTCAATGTGCCACTGCCAGTTATCTAGGGCATCCCTAG
TATGTTGTGTATAGCCGGTAAAGAGTCTCACCAACTTTCGCATCGATCCA
CGGATAGGATTTTTTGCTAAGGCGAGTTCAAGGCACTGCCTGCACGGCCG
CTCCTGATAGTTTGCACCTGGTGAAAGGTTTCAAGGCACTGCCTGCACCG
CCGCTCCTGATAGTTTGCACCTGGTGAAAGGTTTACCAAATTTCTCACGC
CCGTCAAGTATTGCACGCCGTTTAGACCATTGTATCGCTTGGAGACGTTT
GGGAAGCTGCGGTTCTGGCGGCATGCACATACAGTACCGTAGCGTTGTTG
CATCACACTAAAGTACCCAGTTCCTGTTTCTATCACTGCTACGCGGCGTC
GTGTGTGAGACAGGCCGCCGCGTTTGTTCAGCTCGTGTGCCTCTCTATCT
GGCTCGGAATGAGCGTCTACGCCACCTTCATCTGGCCGGTCATCACAGGC
TTGAACATGCGGCACTCGTCCGAGTTCGCATCTTTGCTCGGGAAGCTGGC
ACCATCGTGAGTCGACACGTCTGTTGGTTTTTGTCATGCGGGTGTGCCCC
GCACATGCCGTTTTTCTGGTTTGGGCATGCTTTTGTATCTTGCGCCGTAT
TATCCTCTTCTTCTCACCGACCAGAGGCGTGGAACGCGTACGATACCCCG
CCCGCTCGCGTCAATTTACCCGCAGTAAGCGAGTCTGGCTTCTTTGAATG
GGTTTTAAGGTAGATTTGTATGGTTCAGAGCTCTACCTTTTGCCTTGTGT
CCCATGTCTCAGCGTAAGTCTTTGGATGAGAGGGCCGGCACTTACTGACG
CAAAAGACAATAAGACGACACGCAAGAGTTCTAGTACTACCTATCTTGAC
TGCGATAACCCTTTCATCAGGTTGGTCTGTCAAGGACAATGAACAGCGAT
GTGTTGCGTAACTGACTACGCTGTGGATGAGCAGCTTTCTCTCGCCGACA
ACAAAGCATGCGAACAGAAATTGTTCGAGTGCCCTCAGATGTTCATCTGC
CCAGCGTCAGATCAGATTGGAGAAGCATGGCGCTTTCAGTACTCGAGTTG
ACATCAATCATAATTGAATCTCCCCCCCGGGCCCCACCCCCTGCCCCTCC
CCGTATTTCCACTGCCAAAATAACACCTCGTCGGGTGTGGTGCTACTCTT
CACCTACGCTGCGAAACCGACGCTACCTATGCTGTGGTTGCCCTCGTCCC
ATCGTTCCGGCGGGACGCGCGTCTGGGGCATATCCATGCTTTGCGTGGGT
GCGTTGCTTCCTTTTCGTTTGCGCCCTGAGAACAGTTTCCTTCAGCTATC
CGTGGCGATGATCATGAGCCTGGGAACGTCGAGTCTCGTGATTGGACGCG
CAAACGTGAGAGAGTCCCCTGCGTATGGATATCGCACGGATCGCACGGGC
CGCTCGAATGTCTGCACGAACAGGACGACGAGTCGGACGTTGTTGGTGGT
TGTCACATGTTGTTTTCCCGGTTGTTTGCAGTTGCCGTGACCATGTANNN
NNNNCGTCTGTCAGCCAACCGGACCCCCCCCCTCGCCCTCCACGCGCGCG
CGCCATCCCCCTCCTTGACACACACGCGCCGTAGGGGGTGCAGCTTGGTA
TCATCGGGATATCCCTCGGCATCACTTTATACAACGCCATCGTGCTGGAG
CCGTCGGCAATAGAGGCTCTTGAGGAGGAACAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig106:243..3825-

>mRNA_E-fasciculatus_F_contig106.475.1 ID=mRNA_E-fasciculatus_F_contig106.475.1|Name=mRNA_E-fasciculatus_F_contig106.475.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1476bp|location=Sequence derived from alignment at E-fasciculatus_F_contig106:243..3825- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCACACCCCCACATACACACAACACCAGCACCCCGGGAGACAGAAAGA
AATCCAGGCACCAGCACCAGGCCGGTGTCTTCTCCTTGAGTACTTCGCTG
CTGTTTCCGCACACCCCCACATACACACAACACCAGCACCCCGGGAGACA
GAAAGAAATCCAGGCACCAGCACCAGGCCGGTGTCTTCTCCTTGAGTACT
TCGCTGCTGTTTTCAACTCTGTCATGGTTCTCAGGAGGAGCCTCGCGTGT
GCCTTTGCTGGTCTGGTTCTCCTTGGCATCGTCGATGGATTCGTCGCGCC
TGCTTTCATCCCGGCAGCGACAGCGGGGGCACGGGTCAAGTCACCGGTGG
CAAGCTCAGTCAACTCTGTCATGGTTCTCAGGAGGAGCCTCGCGTGTGCC
TTTGCTGGTCTGGTTCTCCTTGGCATCGTCGATGGATTCGTCGCGCCTGC
TTTCATCCCGGCAGCGACAGCGGGGGCACGGGTCAAGTCACCGGTGGCAA
GCTCAGCAACCATAGCCGGAGCGGCACCGAGGGCTCCGTTGGTCGCCAGG
AGAAGAAGCGCTCTAGCAATGACTGCCAACAAGGCACCGGACAAGCAACC
ATAGCCGGAGCGGCACCGAGGGCTCCGTTGGTCGCCAGGAGAAGAAGCGC
TCTAGCAATGACTGCCAACAAGGCACCGGACAAGACCATCATAACCAACG
CCGCGCCCTTAACCTTCGCCGCGGGGTGCTCGGCCGTCGCCGGCGCGGTT
GCTAAGATAAACCCACACACCATCATAACCAACGCCGCGCCCTTAACCTT
CGCCGCGGGGTGCTCGGCCGTCGCCGGCGCGGTTGCTAAGATAAACCCAC
ACGCCGCCGCGTTTGTTCAGCTCGTGTGCCTCTCTATCTGGCTCGGAATG
AGCGTCTACGCCACCTTCATCTGGCCGGTCATCACAGGCTTGAACATGCG
GCACTCGTCCGAGTTCGCATCTTTGCTCGGGAAGCTGGCACCATCGCCGC
CGCGTTTGTTCAGCTCGTGTGCCTCTCTATCTGGCTCGGAATGAGCGTCT
ACGCCACCTTCATCTGGCCGGTCATCACAGGCTTGAACATGCGGCACTCG
TCCGAGTTCGCATCTTTGCTCGGGAAGCTGGCACCATCTTTCCTTCAGCT
ATCCGTGGCGATGATCATGAGCCTGGGAACGTCGAGTCTCGTGATTGGAC
GCGCAAACTTTCCTTCAGCTATCCGTGGCGATGATCATGAGCCTGGGAAC
GTCGAGTCTCGTGATTGGACGCGCAAACGGGGTGCAGCTTGGTATCATCG
GGATATCCCTCGGCATCACTTTATACAACGCCATCGTGCTGGAGCCGTCG
GCAATAGAGGCTCTTGAGGAGGAACAGGGGGTGCAGCTTGGTATCATCGG
GATATCCCTCGGCATCACTTTATACAACGCCATCGTGCTGGAGCCGTCGG
CAATAGAGGCTCTTGAGGAGGAACAG
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