mRNA_E-fasciculatus_F_contig10028.44.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 1.420e-166
Identity = 243/259 (93.82%), Postives = 251/259 (96.91%), Query Frame = 1

Query:    1 RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRLPGGVGYSDLPSRLRATWYTYHKASKFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREMAKQAAGSKSGTLFGSGRAGAEALRMVEGVNKLKEERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAREGGMLGHASIHGGACFTNRKG 777
            RHGNINLSVEEEEDIHMIRDGI+++AGLHGDVAF AHQVHKWFTRRILRLPGGVGY +LPSRLR TWYTYHK  KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQRE+ KQAAG KSGTLFG+GR GAEALRMVEGVNKLK+ERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAR+GGMLGHASIHGGACFTNRKG
Sbjct:  422 RHGNINLSVEEEEDIHMIRDGIVNEAGLHGDVAFRAHQVHKWFTRRILRLPGGVGYCELPSRLRVTWYTYHK--KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREIVKQAAGGKSGTLFGTGRGGAEALRMVEGVNKLKDERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQARDGGMLGHASIHGGACFTNRKG 678

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BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 2.440e-160
Identity = 240/260 (92.31%), Postives = 250/260 (96.15%), Query Frame = 1

Query:    1 RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRLPGGVGYSDLPSRLRATWYTYHKAS-KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREMAKQAAGSKSGTLFGSGRAGAEALRMVEGVNKLKEERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAREGGMLGHASIHGGACFTNRKG 777
            RHGNINLSVEEEEDIHMIRDGI+++AGLHG +AF AHQVHKWFTRRILRL GGVGY DLPSRLR TWYTYHKAS KFHHSSATGDDNQHRKDMELQRLNAEPRM+LEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQRE+AK AAG+KSGTLFG+ R GAEALRMVEGVNKLKEERRRAR+AVAKAEARLSRL+KDMTISRHKGLEEDMKE MKQAREGGMLGHASIHGGACFTNRKG
Sbjct:  118 RHGNINLSVEEEEDIHMIRDGIVNEAGLHGVLAFRAHQVHKWFTRRILRLRGGVGYCDLPSRLRVTWYTYHKASVKFHHSSATGDDNQHRKDMELQRLNAEPRMILEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREIAKHAAGAKSGTLFGTDRGGAEALRMVEGVNKLKEERRRAREAVAKAEARLSRLDKDMTISRHKGLEEDMKEVMKQAREGGMLGHASIHGGACFTNRKG 377

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LKR2_ECTSI	1.420e-166	93.82	Sodium/hydrogen exchanger family protein n=1 Tax=E...	[more]
A0A6H5L6F4_9PHAE	2.440e-160	92.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	488.4
Seed ortholog evalue	2e-135
Seed eggNOG ortholog	2880.D8LKR2
EggNOG free text desc.	potassium:proton antiporter activity
EggNOG OGs	COG0025@1,KOG1965@2759
COG Functional cat.	P
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Sodium/hydrogen exchanger family protein
Ec32 ortholog	Ec-07_004480.1
Exons	6
Model size	777
Cds size	777
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig10028.44.1	prot_E-fasciculatus_F_contig10028.44.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig10028 317..3821 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927504.8571749-CDS-E-fasciculatus_F_contig10028:316..420	1622927504.8571749-CDS-E-fasciculatus_F_contig10028:316..420	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 317..420 +
1695995567.4201505-CDS-E-fasciculatus_F_contig10028:316..420	1695995567.4201505-CDS-E-fasciculatus_F_contig10028:316..420	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 317..420 +
1622927504.8667443-CDS-E-fasciculatus_F_contig10028:809..927	1622927504.8667443-CDS-E-fasciculatus_F_contig10028:809..927	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 810..927 +
1695995567.432059-CDS-E-fasciculatus_F_contig10028:809..927	1695995567.432059-CDS-E-fasciculatus_F_contig10028:809..927	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 810..927 +
1622927504.8763113-CDS-E-fasciculatus_F_contig10028:2067..2226	1622927504.8763113-CDS-E-fasciculatus_F_contig10028:2067..2226	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 2068..2226 +
1695995567.4463892-CDS-E-fasciculatus_F_contig10028:2067..2226	1695995567.4463892-CDS-E-fasciculatus_F_contig10028:2067..2226	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 2068..2226 +
1622927504.8858972-CDS-E-fasciculatus_F_contig10028:2824..2955	1622927504.8858972-CDS-E-fasciculatus_F_contig10028:2824..2955	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 2825..2955 +
1695995567.4548807-CDS-E-fasciculatus_F_contig10028:2824..2955	1695995567.4548807-CDS-E-fasciculatus_F_contig10028:2824..2955	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 2825..2955 +
1622927504.8971307-CDS-E-fasciculatus_F_contig10028:3231..3337	1622927504.8971307-CDS-E-fasciculatus_F_contig10028:3231..3337	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 3232..3337 +
1695995567.4654546-CDS-E-fasciculatus_F_contig10028:3231..3337	1695995567.4654546-CDS-E-fasciculatus_F_contig10028:3231..3337	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 3232..3337 +
1622927504.9085495-CDS-E-fasciculatus_F_contig10028:3662..3821	1622927504.9085495-CDS-E-fasciculatus_F_contig10028:3662..3821	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 3663..3821 +
1695995567.4765754-CDS-E-fasciculatus_F_contig10028:3662..3821	1695995567.4765754-CDS-E-fasciculatus_F_contig10028:3662..3821	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10028 3663..3821 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig10028:317..3821+
coding sequence from alignment at E-fasciculatus_F_contig10028:317..3821+

protein sequence of mRNA_E-fasciculatus_F_contig10028.44.1

>prot_E-fasciculatus_F_contig10028.44.1 ID=prot_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRL
PGGVGYSDLPSRLRATWYTYHKASKFHHSSATGDDNQHRKDMELQRLNAE
PRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDES
GMMSDFGQREMAKQAAGSKSGTLFGSGRAGAEALRMVEGVNKLKEERRRA
RQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAREGGMLGHASIHG
GACFTNRKG

mRNA from alignment at E-fasciculatus_F_contig10028:317..3821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig10028.44.1 ID=mRNA_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3505bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10028:317..3821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGGCAACATCAACCTTTCCGTGGAAGAAGAGGAAGATATCCACAT
GATACGGGACGGTATTATCCACAAGGCCGGCCTTCACGGGGACGTGGCCT
TCGGGTGAGTTGTCGATTTTTTGCTACTGCTACTGCTACTGCTACTGCTA
CTGCTGTGCATGTGTACATGTGCATGTGTACCTTCAAGGCGAGTTGTGCT
CACGGTCGTTTATCGGGGTCCCTTGTTTTTTGTTGTTCGCGTGATGCTTT
TGCCGCTTTCGATGCCTGCAAAGGTGGTGTTGTGCTTTCGTGCGCCTTCT
CTTGATTATTTTTCGTACTTTTTTTTCGATTTTTTTTGGGGGGGGGAATC
AGAGGAAGCAGTGCCTGTTCGTTGCACTTGTTGGATCTTCCGGGACGTTT
CGTGTATTCTAAGGCGGCATTCTCAGTTGCTGCAGCCTTCAAACCTTAGC
CTTGACGATGGCCGTTCCATGTTGCACAACACCTGCTTCACAGGGCTCAC
CAGGTACACAAGTGGTTCACCCGAAGGATTCTGCGTCTCCCCGGCGGGGT
GGGGTACAGCGACCTGCCCAGCAGGCTTCGCGCCACCTGGTACACCTACC
ACAAGGCGAGTGTCGCTACAGCAATACCATGGTACTGTACATAGACAGTA
GCAGACAACGACACCGAAGGACATGAAAGGGTAACACCTGCCACAAGGCA
AATACAGTTGCAGACAGGTATCTATTTAGTAGCAGACAGGGACAGTGCGG
TGAGTTAAAAACAACGACAACGACAACGAAGAGCACCAAAGGGTAGAGTA
CAATAGATAACGTATGCATACAATAGATGACTAGCCAATAATCAGTGTGA
TGGAGGCGTCGGTCTGGCGGTCACGTTTGCTTCTGCCATTGCCGTAGGAG
ATGCTGCTGAGAGGTCACCGTCACCGCCGCGAATCCCACCATCGTCCTGT
CCTGTCCTCCCCTTGGGATGAATGAGTTTGGTTCCCGGTCGGTGTGGGGG
GAGGGGGCTGTTCGTGCAAGGATACAGATCTACTCGATACGGAAGATACG
GCTCATGTCTTACAATACAATAGTCCATTCCGCTATACTGCTGTAGGGCC
GAACGATTACCCAACTTTCTCTACCCCAGGAAACGCAGTAAGGGTACCTA
CTACTGTACTTGGTAGGCCACGGTGATTGCACGATGACGTACTCGCTAGT
TCATCCTGCAATGGTTATGTCGCGAGGAACATATTTTATGTTGCTGCAAA
GTGAAATCAAGCACAATACATGTATGATAGGCTTACACCGGCGCAGTCGG
TACAAGTCATGTGCCCCAAGACGTGTTTGTCACTTCTGTGCAACACCCAA
TAACGTACGCCGGTCAGTCGCGTGAGAGAGTGCCGAAATGGTGTCCGCTT
TTCCCCTCGTTTCGTCTTCGTCTTCGTCTTGGAGTTTCTTCTTCTTCTTC
TTCTTCTTCGATGCTCTCGTTGTTTCTGTGCCCCCTACAGACAGTGAGTA
GAGCAGGCGAGAAGTGATAAAGACAGGATATGTAGGGGGAACGTTTTTGA
GCCAGCTTTGGCCAAGTAGGAAGGAATCTTCGGCCATCGGCGATCGGTCC
TGTGGGAACAATTGTCCGTAGTCAATGGCCCAACAGCTAAGGCATGCACA
CATCATTGAGTACACACACGCTTCGGAGTTTCCTGCAGATCCATGTTCCG
CCAAAATCACGAACCTCCTTCTTGACATGTACTTTTTTTCTTTTCTCCCA
GAAATTTCACCACTCGTCCGCAACGGGAGACGACAACCAGCACCGCAAGG
ACATGGAGCTGCAACGCCTCAACGCGGAGCCGCGCATGATGCTAGAGGCC
GAGGCCTGGAGCAACCTCAACGCCGGAGACGACCCGGACACGTTGCTCCA
CCCGAACCAGGTGCGTGCACACAGCGTGCGTTTTTTTTCACGATCCTCGT
CTCTCTTGTTGTTGTTGCTGCTTCTGCTGTTGTTGTCGTCACTGATGTTA
TCATATATTTTTTCAGCCACGCCTGGGACAGCGTGGACACACGCACTACA
TTTTCTTCACGACTTTGTTGTTGTTGATGATGATGATGTGACAACGATGG
TGTTGTTGTTGTCGGCGGCGGCGGCGTCGTACCTGCTGGCGTGTGTCATT
GTTTTTTTTTTTTTCCACGCCTGGGACTGGATGACACACCACGGCACCCC
CCTAGCCGATCTTGCAGCCTTAACTGTGAACGATCTATTATACTACTCCT
GCTGCTGCTGCTGCTGCTTCGTCGGCATTCTTCACGATACAGCAGTAGTG
GCCAAGAACGTCGCTCGCCTCATGCTGCTCTTGAGGGTGGGGTCAGGGAA
ATCGCAAGATCACGGTGGTGCTGCACCGCACCCGTCGTGCATCAGGATTC
ATGAATGTTGAGCCCACCTTCTCAGTCTCCCTACCCTTTCTTGTTTTTGT
GTGCTGTTCTTGAAATCTCTTTCGTCTCTCTTTTTTTTTTTCTGCTGTCG
TGTTTCAGACACCAGTGTCCCACACCCTCCGGAAGCACCTGGACAACGTG
GGGATGCTGGGGTTTCAAGACGAGTCGGGGATGATGTCCGACTTCGGGCA
GAGGGAGATGGCCAAGCAAGCCGCGGGGTCCAAGTCTGGGTACGACGCCT
TGCAGAAGTAGCAGTGCGCTTGCAGTCGTTGTTCACTTCTTTGCCTTTGG
TTGATGTTGCTGGCGCATTACGTACGTCCTCTTGTCTGTCCAGCCGTTAG
TACTACTGCTGTTCATTTGTGTTCTGTCGTGTTTCGTGGCTCTGTTGGTT
CTTGTCCCCTCCGTAACATCTAGCGATCCGCGATTCGTTCTCTCAATTGC
GAGTTTCATTTCTTTTTCCTGGTTATCATGCCCGCCGCTATCGATCGCGC
GTGTCTTCCGCGAAGGACTCTGTTCGGGAGCGGCAGGGCTGGGGCAGAGG
CACTCCGTATGGTGGAGGGGGTGAATAAGCTCAAGGAAGAGAGGCGACGA
GCTCGGCAGGCAGTCGCCAAGGTTCGTTGGCGTCTGTCCCCCCTCCCATT
GACAGCGTTGCCAACAATCTACCTTAACCGCATGTATAGTAGTAGCGGCC
CGTCGAGGTTCGTCAGCGTCTCTCCCATGAACAGCCAAACCACTTCTATT
TGTACATGTAGAACCTATCGTCGCATGGAATGATGAGTTGCAGACAACGT
ATGCCTCAACCAAAAGGTCACGATACGCCAATGCAATGGTTTTACAGGGC
GCATCACGCCATGCTGCTGAGAAGTACATACCCACCGCCTTTCACGCAAG
CGAAACGACCCACGAACCCAAAAACTTACCGAAACACCGACCTCAGGCGG
AGGCTCGGCTCTCCCGGCTCAACAAAGACATGACCATATCCAGGCACAAG
GGTTTGGAGGAAGACATGAAGGAGTACATGAAACAAGCGAGGGAGGGGGG
CATGCTGGGGCACGCTTCTATCCACGGGGGGGCTTGCTTCACCAACAGGA
AGGGC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10028:317..3821+

>mRNA_E-fasciculatus_F_contig10028.44.1 ID=mRNA_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10028:317..3821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCACGGCAACATCAACCTTTCCGTGGAAGAAGAGGAAGATATCCACAT
GATACGGGACGGTATTATCCACAAGGCCGGCCTTCACGGGGACGTGGCCT
TCGGAGGCACGGCAACATCAACCTTTCCGTGGAAGAAGAGGAAGATATCC
ACATGATACGGGACGGTATTATCCACAAGGCCGGCCTTCACGGGGACGTG
GCCTTCGGGGCTCACCAGGTACACAAGTGGTTCACCCGAAGGATTCTGCG
TCTCCCCGGCGGGGTGGGGTACAGCGACCTGCCCAGCAGGCTTCGCGCCA
CCTGGTACACCTACCACAAGGCGAGTGGCTCACCAGGTACACAAGTGGTT
CACCCGAAGGATTCTGCGTCTCCCCGGCGGGGTGGGGTACAGCGACCTGC
CCAGCAGGCTTCGCGCCACCTGGTACACCTACCACAAGGCGAGTAAATTT
CACCACTCGTCCGCAACGGGAGACGACAACCAGCACCGCAAGGACATGGA
GCTGCAACGCCTCAACGCGGAGCCGCGCATGATGCTAGAGGCCGAGGCCT
GGAGCAACCTCAACGCCGGAGACGACCCGGACACGTTGCTCCACCCGAAC
CAGAAATTTCACCACTCGTCCGCAACGGGAGACGACAACCAGCACCGCAA
GGACATGGAGCTGCAACGCCTCAACGCGGAGCCGCGCATGATGCTAGAGG
CCGAGGCCTGGAGCAACCTCAACGCCGGAGACGACCCGGACACGTTGCTC
CACCCGAACCAGACACCAGTGTCCCACACCCTCCGGAAGCACCTGGACAA
CGTGGGGATGCTGGGGTTTCAAGACGAGTCGGGGATGATGTCCGACTTCG
GGCAGAGGGAGATGGCCAAGCAAGCCGCGGGGTCCAAGTCTGGACACCAG
TGTCCCACACCCTCCGGAAGCACCTGGACAACGTGGGGATGCTGGGGTTT
CAAGACGAGTCGGGGATGATGTCCGACTTCGGGCAGAGGGAGATGGCCAA
GCAAGCCGCGGGGTCCAAGTCTGGGACTCTGTTCGGGAGCGGCAGGGCTG
GGGCAGAGGCACTCCGTATGGTGGAGGGGGTGAATAAGCTCAAGGAAGAG
AGGCGACGAGCTCGGCAGGCAGTCGCCAAGGACTCTGTTCGGGAGCGGCA
GGGCTGGGGCAGAGGCACTCCGTATGGTGGAGGGGGTGAATAAGCTCAAG
GAAGAGAGGCGACGAGCTCGGCAGGCAGTCGCCAAGGCGGAGGCTCGGCT
CTCCCGGCTCAACAAAGACATGACCATATCCAGGCACAAGGGTTTGGAGG
AAGACATGAAGGAGTACATGAAACAAGCGAGGGAGGGGGGCATGCTGGGG
CACGCTTCTATCCACGGGGGGGCTTGCTTCACCAACAGGAAGGGCGCGGA
GGCTCGGCTCTCCCGGCTCAACAAAGACATGACCATATCCAGGCACAAGG
GTTTGGAGGAAGACATGAAGGAGTACATGAAACAAGCGAGGGAGGGGGGC
ATGCTGGGGCACGCTTCTATCCACGGGGGGGCTTGCTTCACCAACAGGAA
GGGC