mRNA_E-fasciculatus_F_contig16131.4191.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16131.4191.1
Unique NamemRNA_E-fasciculatus_F_contig16131.4191.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16131.4191.1 vs. uniprot
Match: D7FH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH60_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.720e-62
Identity = 109/149 (73.15%), Postives = 120/149 (80.54%), Query Frame = 1 
Query:    7 GDARSNHRCTSREGETMRVFEAATALPFMVLRLVASASGEADRCDRVVVEVSTPEHATYSGTFYQACTVGTSLEGAPLFKTDGGLCLQFVDGGSADXXXXXXXXXXXXXHVGAHAAADSEPPDDSLDFDMSDVAEEAEPVFRRSLTATC 453
            G+A  +HRCTSREGETMRVF AATALPF+VL LV+SASG+AD C+RVVVEVSTPEHAT+SG FYQ   VGTSLEG PL KTDGGLCLQFV+GGSA              HVGAHAAAD EP D+SLDFDMSDV+EE EPVFRRS+ ATC
Sbjct:   27 GNAHPSHRCTSREGETMRVFVAATALPFVVLGLVSSASGQADGCERVVVEVSTPEHATHSGRFYQ---VGTSLEGTPLLKTDGGLCLQFVEGGSA----REEEQPPLLLHVGAHAAADGEPRDESLDFDMSDVSEEEEPVFRRSIAATC 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16131.4191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH60_ECTSI3.720e-6273.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16131contigE-fasciculatus_F_contig16131:189..2504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000890.1
Hectar predicted targeting categoryother localisation
Exons4
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16131.4191.1prot_E-fasciculatus_F_contig16131.4191.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16131 189..2504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.3478882-CDS-E-fasciculatus_F_contig16131:188..3211622928079.3478882-CDS-E-fasciculatus_F_contig16131:188..321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 189..321 -
1695995815.144331-CDS-E-fasciculatus_F_contig16131:188..3211695995815.144331-CDS-E-fasciculatus_F_contig16131:188..321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 189..321 -
1622928079.3634427-CDS-E-fasciculatus_F_contig16131:691..8101622928079.3634427-CDS-E-fasciculatus_F_contig16131:691..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 692..810 -
1695995815.1547375-CDS-E-fasciculatus_F_contig16131:691..8101695995815.1547375-CDS-E-fasciculatus_F_contig16131:691..810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 692..810 -
1622928079.378737-CDS-E-fasciculatus_F_contig16131:1801..18901622928079.378737-CDS-E-fasciculatus_F_contig16131:1801..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 1802..1890 -
1695995815.1631222-CDS-E-fasciculatus_F_contig16131:1801..18901695995815.1631222-CDS-E-fasciculatus_F_contig16131:1801..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 1802..1890 -
1622928079.3926532-CDS-E-fasciculatus_F_contig16131:2383..25041622928079.3926532-CDS-E-fasciculatus_F_contig16131:2383..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 2384..2504 -
1695995815.1718888-CDS-E-fasciculatus_F_contig16131:2383..25041695995815.1718888-CDS-E-fasciculatus_F_contig16131:2383..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16131 2384..2504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16131.4191.1

>prot_E-fasciculatus_F_contig16131.4191.1 ID=prot_E-fasciculatus_F_contig16131.4191.1|Name=mRNA_E-fasciculatus_F_contig16131.4191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
RKGDARSNHRCTSREGETMRVFEAATALPFMVLRLVASASGEADRCDRVV
VEVSTPEHATYSGTFYQACTVGTSLEGAPLFKTDGGLCLQFVDGGSADEE
EEEEEHPPLLLHVGAHAAADSEPPDDSLDFDMSDVAEEAEPVFRRSLTAT
CEQ*
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mRNA from alignment at E-fasciculatus_F_contig16131:189..2504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16131.4191.1 ID=mRNA_E-fasciculatus_F_contig16131.4191.1|Name=mRNA_E-fasciculatus_F_contig16131.4191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2316bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16131:189..2504- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAAGGGAGATGCCCGCTCCAACCACCGCTGTACATCGAGGGAGGGAGA
GACAATGAGGGTGTTCGAAGCTGCCACTGCTCTGCCCTTCATGGTCTTGA
GGCTTGTTGCATCTGCGTCAGGTGCGCGCTTGCGAACGTCCGTCCAAAAA
AAGGGGGGGTCCAGTAAGTACCCTTGGCAGGGTTGTTCGTTAAAATAATC
GTGTTGGATAAATTATGCCATTGGGGACCATGCAGCGGGCCCTTTAAAAA
AGAAACTATGCCTAACCCACGGTGCCAACCACGGGGAGGGGGTTCGTGAA
GACTAATCTAGAGATAATGTCAATCGACGTTGATCTATTTCGTAATGACT
GCAGCAAACTTGCGTGCGTGTGACACAGACGGACAAGAGCGGATCCCAAA
AGTGACTGACTGGGTTGGTCGCTCTTTTCGTTCGTTCTTAGACTAGAGGC
GACAAAGTGATGCATGAACGCGGCATTCAACACAAAACGACGCTGGTTGT
GGCCGCAGCTCACGCGGGCCTTAAAAACAAAATTCCCGCCCTGTCTTCTT
CACCCCCTGAACACCATTCATCGGTGGTATCTATGCTCGACGAATTTGAC
CGCCCGCGCTGCAGGGGAAGCAGACCGCTGTGACAGAGTGGTGGTCGAGG
TGTCAACGCCGGAGCATGCCACATACTCGGGTACATTCTACCAGGCATGT
ACAGTACTGTTCTTCTATCTGGGACTAACGTAACGGTCGGGGGGCACTTT
GGGGGCGAAATCATGAGGTACAATACCTCTTAGTCCGGTGTCGGTGATCA
TGAGACGTGGCCAACAGGCTTTTACGTGAGTGTGTCTGTCTCACTAACCG
AAAGCATAGGGTGTAAGATGAGGTGATGATCCCTCTACCGTGGCACCGCT
CCTGGCCAGAAGCGATTGTTGTGCCCCCGAAGACGGGGTTAGGTTGACGA
AAAATGCTTACACAGCAGTGGGGGACCCTCAATACCACCATCGGTGTGTA
CCCGACGAACCGACCGGCGTGCGATTCACTGTTCAATGTGCAGAATGCCT
TGGGTGGTTCAGTCTATGCAAAGCAAAATCACCGGTGCCATTCAGAGCCA
CCGGCGCTACTTAACCGGCGCTATTGAAGCCCGTCAGCCGTGTATAAGCT
CACGGACCAGACACCACATGATTATTTACGGTCTACCCGGACGTGGGGGT
GCGTCGAGGTCGACACCCCTTTTGCCAAATGTCGGATGCCCGCGCCCCTT
GTGGAGACCTTGTCAAGGTCGGACACCTTGTAAAACCCAACCAAGACCTC
AAAAGGCTAGACATTTGAGGTGTTTTCGACCTTGACAAGGTCGCCACACG
GGGCACGGGCATACGACATACTGTATTGGCAAGGGGGGTTGGGCATCCAC
CTGTGCAACTCCTAAGCCCCGCTGTGCGCATTCTGTACAGCCTGTTTGTT
CCGATTTTATGGCGGCATGCGCATTCCACTGCTGTTTGGCGGTCGCTGCC
TCAGTAATGTCGGAAAGCTCTTGTTTTGAGAAGCAACAACAGCAGCACCC
AGGTACGACGGGTGCCTCCGTCCTGGCTAGTACACGAGGGGTGGCACGGA
CCATGTGCTTTGTTTTTGTCAACAGAACTGTCTTAGGTCGACCCTGCTCT
TGTCATTTTGGTTTTGCTGTCGTCCACTCGAACGCGATCCTCAGGTTGGC
ACGTCGTTGGAGGGCGCCCCGCTGTTCAAGACCGACGGCGGGCTTTGCCT
TCAATTCGTCGACGGCGGCTCCGCTGACGAAGAAGAGGAAGAGGAAGAGC
ACCCCCCCCTCTTGTGAGTGAGTGTCCATCCACTCCTGGTGCCCGACTGT
CTCTCGAGCAACGTCTCGAGAAAGCTACCTCCGTGTTCGATCGCCCTTGG
ACCGAGTTTTTTTTTTTTCCGTGGTTCTCTCATTTAACTTACAACTTCCA
ATCCCATTTTGCACACTACCTCGCAGCTCACGTGTTGTCTAACGGATACC
GTCCTAAACTTTGCACTATACCACGATCCTGTTGATCTGTAAGTAGAATG
ACGGCCAAGTCTAAAGTATAATGACATCAAATCACCTTTTTCCGTACGAT
TGCGACAGGTATAGACAGCAGCCCGTTGCCAGCAGCAGCTCTTGCCGTCA
TAAATTTCCTGCACCCCTCGCTTCCTTTCTCAGGCTCCACGTAGGCGCGC
ACGCAGCCGCGGACAGCGAACCTCCCGATGACAGCCTCGATTTCGACATG
TCTGACGTGGCGGAGGAGGCAGAACCAGTTTTTCGCCGGTCTCTCACGGC
AACATGTGAGCAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16131:189..2504-

>mRNA_E-fasciculatus_F_contig16131.4191.1 ID=mRNA_E-fasciculatus_F_contig16131.4191.1|Name=mRNA_E-fasciculatus_F_contig16131.4191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16131:189..2504- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAAGGGAGATGCCCGCTCCAACCACCGCTGTACATCGAGGGAGGGAGA
GACAATGAGGGTGTTCGAAGCTGCCACTGCTCTGCCCTTCATGGTCTTGA
GGCTTGTTGCATCTGCGTCAGCGAAAGGGAGATGCCCGCTCCAACCACCG
CTGTACATCGAGGGAGGGAGAGACAATGAGGGTGTTCGAAGCTGCCACTG
CTCTGCCCTTCATGGTCTTGAGGCTTGTTGCATCTGCGTCAGGGGAAGCA
GACCGCTGTGACAGAGTGGTGGTCGAGGTGTCAACGCCGGAGCATGCCAC
ATACTCGGGTACATTCTACCAGGCATGTACAGGGAAGCAGACCGCTGTGA
CAGAGTGGTGGTCGAGGTGTCAACGCCGGAGCATGCCACATACTCGGGTA
CATTCTACCAGGCATGTACAGTTGGCACGTCGTTGGAGGGCGCCCCGCTG
TTCAAGACCGACGGCGGGCTTTGCCTTCAATTCGTCGACGGCGGCTCCGC
TGACGAAGAAGAGGAAGAGGAAGAGCACCCCCCCCTCTTGTTGGCACGTC
GTTGGAGGGCGCCCCGCTGTTCAAGACCGACGGCGGGCTTTGCCTTCAAT
TCGTCGACGGCGGCTCCGCTGACGAAGAAGAGGAAGAGGAAGAGCACCCC
CCCCTCTTGCTCCACGTAGGCGCGCACGCAGCCGCGGACAGCGAACCTCC
CGATGACAGCCTCGATTTCGACATGTCTGACGTGGCGGAGGAGGCAGAAC
CAGTTTTTCGCCGGTCTCTCACGGCAACATGTGAGCAGTAAGCTCCACGT
AGGCGCGCACGCAGCCGCGGACAGCGAACCTCCCGATGACAGCCTCGATT
TCGACATGTCTGACGTGGCGGAGGAGGCAGAACCAGTTTTTCGCCGGTCT
CTCACGGCAACATGTGAGCAGTAA
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