mRNA_E-fasciculatus_F_contig16097.4172.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16097.4172.1 vs. uniprot
Match: D8LJE0_ECTSI (Putative Del transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE0_ECTSI) HSP 1 Score: 231 bits (588), Expect = 3.590e-63 Identity = 271/452 (59.96%), Postives = 279/452 (61.73%), Query Frame = 1
Query: 1 QVGSESRRSRLRRPSFDGMSPPSTLASTRWVSPSDTPYTANADVVTTDXXXXXXXXXXXXXXXXXXXXXXXXDGPKAAAGISSSFMLQEGPSDAMSDQGSPVDPRQVMREFPDPGSYDASSSSSNSV-----ERWGRKRRRSVPRYNDDNDAWLAHQGAGDGQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVSLXXXXXXXXXXXXXXXXXXXXDPLSMKECLDEYMETYTEQWNSWREGGMGDFRPPAFLSPGLGAAFGSSPTSPTFFASXXXXXXXXXXXXXNAFRSSNDWGGDEAAADG 1341
+VGSESRRSRLRRPSF+GMSPPSTLASTRWVSPSDTPY NADV T XXXXXXXXXXX +SSSFM EGPSD MSDQGSPVDPRQVMREFPDPGSYDA SS ERW RKRRRSVPRY++D+DAWLAHQG GD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX XXXXXXXXXXXX RW SL DP SMKECLDEYMETYTEQWNSWR+GG GDFRPPAFLSPGLGAAFGSSPTSPTFFAS + RSS DWG DEA ADG
Sbjct: 675 EVGSESRRSRLRRPSFEGMSPPSTLASTRWVSPSDTPYATNADVATNGCSGGNAAKAPTPAXXXXXXXXXXXX--XXXXXLSSSFMAPEGPSDVMSDQGSPVDPRQVMREFPDPGSYDAPSSXXXXXXXXXXERWARKRRRSVPRYDNDDDAWLAHQGDGD-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRARNRSVGVAVAGTTMTTNAGSCRGGVSTPNTRPGASAXXXXXXXXXRGGVVARALNAAPPSRARNNDAVGRKQGGARXXXXXXXXXXXXEGAMMDGDAQGGAVRWFSLGGGGAAVAVTPEESPLAPPPDPSSMKECLDEYMETYTEQWNSWRDGGTGDFRPPAFLSPGLGAAFGSSPTSPTFFASPPPLPPVASSSAFS--RSSQDWGSDEAGADG 1117
BLAST of mRNA_E-fasciculatus_F_contig16097.4172.1 vs. uniprot
Match: A0A6H5L5C3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C3_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.250e-60 Identity = 229/419 (54.65%), Postives = 236/419 (56.32%), Query Frame = 1
Query: 1 QVGSESRRSRLRRPSFDGMSPPSTLASTRWVSPSDTPYTANADVVTTDXXXXXXXXXXXXXXXXXXXXXXXXDGPKAAAGISSSFMLQEGPSDAMSDQGSPVDPRQVMREFPDPGSYDASSSSSNSVERWGRKRRRSVPRYNDDND---AWLAHQGAGDGQEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVSLXXXXXXXXXXXXXXXXXXXXDPLSMKECLDEYMETYTEQWNSWREGGMGDFRPPAFLSPGLGAAFGSSPTSPTFFAS 1248
+VGSESRRSR RRPSFDGMSPPSTLASTRWVSPSDTP+ ANADVVT XXXXXXXXXXXXXXXX +SSSFM+ EGPSDAMSDQGSPVDPRQVMREFPDPGSYDASSSS NSVERW RKRRRSVPRY++DND AWLAHQ GDG XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX RW SL DP S+KECLDEYMETYTEQWNSWREGG GDFRPPAFLSPGLG AFGS PTSPTFFAS
Sbjct: 807 EVGSESRRSRPRRPSFDGMSPPSTLASTRWVSPSDTPFAANADVVTDGGNGXXXXXXXXXXXXXXXX-------------LSSSFMVPEGPSDAMSDQGSPVDPRQVMREFPDPGSYDASSSS-NSVERWVRKRRRSVPRYDNDNDDDGAWLAHQVDGDGXXXXXXXXXAFSPTQLTAAKSAGVAASKMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRARNRSVGVAVAGMTTTTYAGSWRGGALTPNTRPGAASAXXXXXGSRDGVVARALNAAPPSRARNNDAVGRKQRRARVGGDGGGKAGGEGAMMDGDAQMGAV--------RWFSLGRGGAAVAVTPEESPLAPPPDPSSVKECLDEYMETYTEQWNSWREGGTGDFRPPAFLSPGLGTAFGSGPTSPTFFAS 1203 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16097.4172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16097.4172.1 >prot_E-fasciculatus_F_contig16097.4172.1 ID=prot_E-fasciculatus_F_contig16097.4172.1|Name=mRNA_E-fasciculatus_F_contig16097.4172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=447bp QVGSESRRSRLRRPSFDGMSPPSTLASTRWVSPSDTPYTANADVVTTDGGback to top mRNA from alignment at E-fasciculatus_F_contig16097:10..2514+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16097.4172.1 ID=mRNA_E-fasciculatus_F_contig16097.4172.1|Name=mRNA_E-fasciculatus_F_contig16097.4172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2505bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16097:10..2514+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16097:10..2514+ >mRNA_E-fasciculatus_F_contig16097.4172.1 ID=mRNA_E-fasciculatus_F_contig16097.4172.1|Name=mRNA_E-fasciculatus_F_contig16097.4172.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2682bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16097:10..2514+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |