mRNA_E-fasciculatus_F_contig16078.4158.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16078.4158.1
Unique NamemRNA_E-fasciculatus_F_contig16078.4158.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.270e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 135
            YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP
Sbjct:  358 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 402
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.270e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 135
            YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP
Sbjct:   27 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 71
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A4Q5ZI15_9DELT (Uncharacterized protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZI15_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAP 135
            Y +  PG+HT ++ A DEAGNVDP PAV TW VD A P   + SAP
Sbjct:  292 YTTLAPGTHTFSVRAKDEAGNVDPTPAVRTWLVDLASPAAPMLSAP 337
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: F8CLT6_MYXFH (OmpA domain-containing protein n=3 Tax=Myxococcaceae TaxID=31 RepID=F8CLT6_MYXFH)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   19 GSHTVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAP 135
            G HT+A+ AVD AGNVDP PAV TW+VDA  P T++ S P
Sbjct:  856 GEHTLAVYAVDAAGNVDPTPAVRTWTVDATAPETTIVSGP 895
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: UPI001F1BC852 (Ig-like domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F1BC852)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 135
            Y S   G HT+A+ AVD AGNVDP PA +TW+VD   P T++ S P
Sbjct:  669 YTSLSQGPHTLAVRAVDTAGNVDPTPATYTWTVDTVAPDTTIVSGP 714
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A2V6VDH4_9BACT (Ig-like domain-containing protein (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6VDH4_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 8.180e-6
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAP 135
            Y++   GSHT  + AVD AGNVDP PA +TW++D   P T++T+AP
Sbjct:  806 YSALAAGSHTFQVRAVDTAGNVDPTPASFTWTIDTTAPDTTITAAP 851
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: UPI001C24EADC (Ig-like domain-containing protein n=1 Tax=Citreicoccus inhibens TaxID=2849499 RepID=UPI001C24EADC)

HSP 1 Score: 50.1 bits (118), Expect = 8.190e-6
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 GSHTVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAP 135
            GSHT+ + AVD AGNVDP PA +TW+VD   P TS TS P
Sbjct:  694 GSHTLQVRAVDAAGNVDPTPASYTWTVDTTAPDTSFTSTP 733
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A2T8F5D2_9ACTN (Uncharacterized protein n=2 Tax=Nocardioides gansuensis TaxID=2138300 RepID=A0A2T8F5D2_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 8.190e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAP 135
            Y+S   GSHT  + AVD  G VDP+PAV+TW++D   P T +TS P
Sbjct: 6380 YSSLATGSHTFRVRAVDSGGAVDPQPAVFTWTIDQTEPETIITSGP 6425
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A848LS83_9DELT (OmpA family protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LS83_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 GSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 135
            GSHT+ + AVD AGNVDP PA +TW+VD   P TS+ S P
Sbjct:  751 GSHTLEVRAVDAAGNVDPTPATYTWTVDTVAPDTSIVSGP 790
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BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Match: A0A0H4WQC5_9DELT (Internalin, putative n=2 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WQC5_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   19 GSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 135
            GSHT+ + AVD AGNVDP PAV+TW++D   P T+L+  P
Sbjct:  999 GSHTLQVRAVDAAGNVDPTPAVYTWTIDTIAPDTTLSGGP 1038
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16078.4158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK9_ECTSI5.270e-21100.00OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K857_9PHAE5.270e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q5ZI15_9DELT5.980e-656.52Uncharacterized protein n=1 Tax=Myxococcaceae bact... [more]
F8CLT6_MYXFH5.980e-662.50OmpA domain-containing protein n=3 Tax=Myxococcace... [more]
UPI001F1BC8525.980e-654.35Ig-like domain-containing protein n=1 Tax=Myxococc... [more]
A0A2V6VDH4_9BACT8.180e-652.17Ig-like domain-containing protein (Fragment) n=1 T... [more]
UPI001C24EADC8.190e-662.50Ig-like domain-containing protein n=1 Tax=Citreico... [more]
A0A2T8F5D2_9ACTN8.190e-652.17Uncharacterized protein n=2 Tax=Nocardioides gansu... [more]
A0A848LS83_9DELT1.120e-560.00OmpA family protein n=1 Tax=Pyxidicoccus fallax Ta... [more]
A0A0H4WQC5_9DELT1.530e-557.50Internalin, putative n=2 Tax=Myxococcus hansupus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16078contigE-fasciculatus_F_contig16078:1690..1824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue8.7e-18
Seed eggNOG ortholog2880.D8LBK9
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.9049864-CDS-E-fasciculatus_F_contig16078:1689..18241622928074.9049864-CDS-E-fasciculatus_F_contig16078:1689..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16078 1690..1824 +
1695995812.855234-CDS-E-fasciculatus_F_contig16078:1689..18241695995812.855234-CDS-E-fasciculatus_F_contig16078:1689..1824Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16078 1690..1824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16078.4158.1prot_E-fasciculatus_F_contig16078.4158.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16078 1690..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16078.4158.1

>prot_E-fasciculatus_F_contig16078.4158.1 ID=prot_E-fasciculatus_F_contig16078.4158.1|Name=mRNA_E-fasciculatus_F_contig16078.4158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
YASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP
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mRNA from alignment at E-fasciculatus_F_contig16078:1690..1824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16078.4158.1 ID=mRNA_E-fasciculatus_F_contig16078.4158.1|Name=mRNA_E-fasciculatus_F_contig16078.4158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16078:1690..1824+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGCCTCGGAACTGCCGGGGTCGCACACGGTGGCCATCGCGGCGGTGGA
CGAGGCGGGCAACGTCGACCCCGAGCCGGCGGTGTGGACATGGTCTGTCG
ACGCGCGTCCAAGGACGTCCCTGACAAGCGCCCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16078:1690..1824+

>mRNA_E-fasciculatus_F_contig16078.4158.1 ID=mRNA_E-fasciculatus_F_contig16078.4158.1|Name=mRNA_E-fasciculatus_F_contig16078.4158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16078:1690..1824+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACGCCTCGGAACTGCCGGGGTCGCACACGGTGGCCATCGCGGCGGTGGA
CGAGGCGGGCAACGTCGACCCCGAGCCGGCGGTGTGGACATGGTCTGTCG
ACGCGCGTCCAAGGACGTCCCTGACAAGCGCCCCATACGCCTCGGAACTG
CCGGGGTCGCACACGGTGGCCATCGCGGCGGTGGACGAGGCGGGCAACGT
CGACCCCGAGCCGGCGGTGTGGACATGGTCTGTCGACGCGCGTCCAAGGA
CGTCCCTGACAAGCGCCCCA
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