mRNA_E-fasciculatus_F_contig16062.4150.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16062.4150.1
Unique NamemRNA_E-fasciculatus_F_contig16062.4150.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: D8LQY3_ECTSI (NAD dependent malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY3_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 4.290e-126
Identity = 179/186 (96.24%), Postives = 183/186 (98.39%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFYRV+MDNFAEMA+VV TPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRAD+SYLGLNQERLEGDEYL VVDEFVAA KARWPKALIQFEDFRTEYASKLLERYRY+HLCFNDDIQ
Sbjct:  110 LFYRVVMDNFAEMASVVYTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADKSYLGLNQERLEGDEYLHVVDEFVAAVKARWPKALIQFEDFRTEYASKLLERYRYKHLCFNDDIQ 295
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: D8LQY1_ECTSI (Malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY1_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 1.060e-125
Identity = 180/186 (96.77%), Postives = 184/186 (98.92%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFYRV+MDNFAEMA+VV TPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRAD+SYLGLNQERLEGDEYLQVVDEFVAA KARWPKALIQFEDFRTEYASKLLERYRY+HLCFNDDIQ
Sbjct:  165 LFYRVVMDNFAEMASVVYTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADKSYLGLNQERLEGDEYLQVVDEFVAAVKARWPKALIQFEDFRTEYASKLLERYRYKHLCFNDDIQ 350
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A097IUL3_9PHAE (Malic enzyme n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUL3_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 4.870e-120
Identity = 176/186 (94.62%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFYRVLMDNFAEMA+VV TPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPS +VDAIVVTDGSRILGLGDLGMNGMGIS+GKLDLYVAAAGFHPARVLPCVIDVGTNNK+LR D+SYLGLNQERLEGDEYLQVVDEFVAAAKARWPK LIQFEDFRTEYASKLLERYRY+HLCFNDDIQ
Sbjct:  170 LFYRVLMDNFAEMASVVYTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSQKVDAIVVTDGSRILGLGDLGMNGMGISVGKLDLYVAAAGFHPARVLPCVIDVGTNNKELREDKSYLGLNQERLEGDEYLQVVDEFVAAAKARWPKVLIQFEDFRTEYASKLLERYRYEHLCFNDDIQ 355
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A097IUF5_9PHAE (Malic enzyme n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUF5_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 9.210e-120
Identity = 175/186 (94.09%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFY VL++NFAEMA+VV TPTVGWACLNFSRMFR+ARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLR D+SYLG+NQERLEG+EYLQVVDEFVAAAKARWPK LIQFEDFRTEYASKLLERYRYQHLCFNDDIQ
Sbjct:  170 LFYSVLVNNFAEMASVVYTPTVGWACLNFSRMFRVARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLREDKSYLGINQERLEGEEYLQVVDEFVAAAKARWPKVLIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 355
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A097IUJ4_9PHAE (Malic enzyme n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUJ4_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 8.920e-118
Identity = 171/186 (91.94%), Postives = 180/186 (96.77%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LF+RVLMDNFAEMA+VV TPTVGWACLN+SRMFR+ARGMYFS++DRGHM SIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNN+KLR D+SYLGLNQ RLEGDEYLQ+VDEFVAA KARWPKALIQFEDFRTEYASKLLERYRY HLCFNDDIQ
Sbjct:  183 LFFRVLMDNFAEMASVVYTPTVGWACLNYSRMFRVARGMYFSSRDRGHMTSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNEKLRKDKSYLGLNQARLEGDEYLQIVDEFVAAIKARWPKALIQFEDFRTEYASKLLERYRYDHLCFNDDIQ 368
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A6H5L1D4_9PHAE (malic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D4_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 7.610e-116
Identity = 167/193 (86.53%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADE-------SYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFYRVL+DNFAEMA+VV TPTVGWACLN SRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVV  GSRILGLGD+GMNGMGISIGKLDLYVAAAGFHPARVLPC+ID+GTN+KKL AD+       +YLGLNQER +GDEYLQVVDEFVAA KARWPKALIQ EDFRTEYASKLLERYRY+HLCFNDD+Q
Sbjct:   57 LFYRVLLDNFAEMASVVYTPTVGWACLNLSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVMGGSRILGLGDVGMNGMGISIGKLDLYVAAAGFHPARVLPCLIDLGTNSKKLLADDRLQRSAKAYLGLNQERPDGDEYLQVVDEFVAAVKARWPKALIQVEDFRTEYASKLLERYRYKHLCFNDDVQ 249
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A0A0V8F1_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A0A0V8F1_SACJA)

HSP 1 Score: 353 bits (905), Expect = 8.550e-116
Identity = 169/186 (90.86%), Postives = 177/186 (95.16%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            L+YRVLMDNFAEMA+VV TPTVGWACLNFSRMFR+ARGMYFS++D+GHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNN KLR D+SYLGLNQ R+EGDEYLQVVDEFVAA KARWP  LIQFEDFRTEYA KLLERYRY HLCFNDDIQ
Sbjct:  186 LYYRVLMDNFAEMASVVYTPTVGWACLNFSRMFRVARGMYFSSRDKGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNPKLRKDKSYLGLNQPRIEGDEYLQVVDEFVAAVKARWPNVLIQFEDFRTEYAYKLLERYRYDHLCFNDDIQ 371
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A097IUJ1_9PHAE (Malic enzyme n=3 Tax=Sargassum TaxID=3015 RepID=A0A097IUJ1_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.260e-112
Identity = 162/186 (87.10%), Postives = 177/186 (95.16%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            L+YRVL+DNF EMA+VV TPTVGWAC+NFSRMFR+ARGMYFS++D+GHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCV+DVGTNN KL  D++YLGLNQ RLEG+EYLQV+DEFVAA KARWPK +IQFEDFRTEYASKLLERYR+ HLCFNDDIQ
Sbjct:  191 LYYRVLLDNFEEMASVVYTPTVGWACMNFSRMFRVARGMYFSSRDKGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVVDVGTNNDKLLEDKNYLGLNQRRLEGEEYLQVMDEFVAAVKARWPKVIIQFEDFRTEYASKLLERYRHHHLCFNDDIQ 376
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: A0A097IUI6_9PHAE (Malic enzyme n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUI6_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 1.370e-108
Identity = 160/186 (86.02%), Postives = 172/186 (92.47%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            L+YRVLMDNF+EMAAVV TPTVGWACLNFSRMFR+ARGMYFS+ D G MVS+AYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKL LYVAAAGFHP++VLPCVIDVGTNN+KLR D +YLGL+Q RLEGDEYL+VVDEFVAA K RWPK +IQFEDFRTEYA KLLERYR  HLCFNDDIQ
Sbjct:  181 LYYRVLMDNFSEMAAVVYTPTVGWACLNFSRMFRVARGMYFSSHDSGQMVSLAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLALYVAAAGFHPSKVLPCVIDVGTNNEKLRKDPNYLGLDQPRLEGDEYLKVVDEFVAAVKTRWPKVMIQFEDFRTEYAMKLLERYRSDHLCFNDDIQ 366
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BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Match: UPI000C75C0E3 (NAD-dependent malic enzyme 62 kDa isoform, mitochondrial-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75C0E3)

HSP 1 Score: 275 bits (702), Expect = 2.100e-89
Identity = 126/186 (67.74%), Postives = 153/186 (82.26%), Query Frame = 1 
Query:    1 LFYRVLMDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNWPSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLPCVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKALIQFEDFRTEYASKLLERYRYQHLCFNDDIQ 558
            LFY +LM+NF EMA ++ TPTV WAC NFS ++R  RGMYFSA DRG M S+ YNWPS +VDA+VVTDGSR+LGLGDLG+ G+GISIGKLDLYVAA GFHP R+LP VID GTNN  L  D +YLGL Q R++G+EY +++DEF+AA K RWPKALIQFEDF++++A  LLERYR ++L FNDDIQ
Sbjct:  126 LFYSILMENFQEMAPIIYTPTVAWACKNFSHLYRRPRGMYFSANDRGEMASMVYNWPSDDVDAVVVTDGSRVLGLGDLGIGGLGISIGKLDLYVAAGGFHPRRILPAVIDTGTNNPDLLKDPAYLGLKQARMDGEEYYELIDEFMAAVKLRWPKALIQFEDFQSKHAINLLERYREEYLMFNDDIQ 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16062.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQY3_ECTSI4.290e-12696.24NAD dependent malate dehydrogenase n=1 Tax=Ectocar... [more]
D8LQY1_ECTSI1.060e-12596.77Malate dehydrogenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A097IUL3_9PHAE4.870e-12094.62Malic enzyme n=2 Tax=Scytosiphonaceae TaxID=2891 R... [more]
A0A097IUF5_9PHAE9.210e-12094.09Malic enzyme n=1 Tax=Punctaria latifolia TaxID=900... [more]
A0A097IUJ4_9PHAE8.920e-11891.94Malic enzyme n=1 Tax=Desmarestia viridis TaxID=623... [more]
A0A6H5L1D4_9PHAE7.610e-11686.53malic domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A0A0V8F1_SACJA8.550e-11690.86Malate dehydrogenase n=2 Tax=Saccharina TaxID=3093... [more]
A0A097IUJ1_9PHAE1.260e-11287.10Malic enzyme n=3 Tax=Sargassum TaxID=3015 RepID=A0... [more]
A0A097IUI6_9PHAE1.370e-10886.02Malic enzyme n=1 Tax=Dictyopteris undulata TaxID=1... [more]
UPI000C75C0E32.100e-8967.74NAD-dependent malic enzyme 62 kDa isoform, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16062contigE-fasciculatus_F_contig16062:562..2787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.3
Seed ortholog evalue2.6e-97
Seed eggNOG ortholog2880.D8LQY1
KEGG rclassRC00105
KEGG koko:K00028,ko:K00029,ko:K13117
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00355
EggNOG free text desc.malate dehydrogenase (decarboxylating) (NAD ) activity
EggNOG OGsCOG0281@1,KOG1257@2759
EC1.1.1.39,1.1.1.40,3.6.4.13
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size558
Cds size540
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16062.4150.1prot_E-fasciculatus_F_contig16062.4150.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16062 562..2769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.0382142-CDS-E-fasciculatus_F_contig16062:561..6451622928074.0382142-CDS-E-fasciculatus_F_contig16062:561..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 562..645 -
1695995812.4205978-CDS-E-fasciculatus_F_contig16062:561..6451695995812.4205978-CDS-E-fasciculatus_F_contig16062:561..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 562..645 -
1622928074.0534756-CDS-E-fasciculatus_F_contig16062:994..11001622928074.0534756-CDS-E-fasciculatus_F_contig16062:994..1100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 995..1100 -
1695995812.4319673-CDS-E-fasciculatus_F_contig16062:994..11001695995812.4319673-CDS-E-fasciculatus_F_contig16062:994..1100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 995..1100 -
1622928074.069391-CDS-E-fasciculatus_F_contig16062:2044..22321622928074.069391-CDS-E-fasciculatus_F_contig16062:2044..2232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 2045..2232 -
1695995812.4479713-CDS-E-fasciculatus_F_contig16062:2044..22321695995812.4479713-CDS-E-fasciculatus_F_contig16062:2044..2232Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 2045..2232 -
1622928074.0848615-CDS-E-fasciculatus_F_contig16062:2607..27691622928074.0848615-CDS-E-fasciculatus_F_contig16062:2607..2769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 2608..2769 -
1695995812.4629476-CDS-E-fasciculatus_F_contig16062:2607..27691695995812.4629476-CDS-E-fasciculatus_F_contig16062:2607..2769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16062 2608..2769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.105915-UTR-E-fasciculatus_F_contig16062:2769..27871622928074.105915-UTR-E-fasciculatus_F_contig16062:2769..2787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16062 2770..2787 -
1695995812.4798338-UTR-E-fasciculatus_F_contig16062:2769..27871695995812.4798338-UTR-E-fasciculatus_F_contig16062:2769..2787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16062 2770..2787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16062.4150.1

>prot_E-fasciculatus_F_contig16062.4150.1 ID=prot_E-fasciculatus_F_contig16062.4150.1|Name=mRNA_E-fasciculatus_F_contig16062.4150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MDNFAEMAAVVCTPTVGWACLNFSRMFRIARGMYFSAKDRGHMVSIAYNW
PSHEVDAIVVTDGSRILGLGDLGMNGMGISIGKLDLYVAAAGFHPARVLP
CVIDVGTNNKKLRADESYLGLNQERLEGDEYLQVVDEFVAAAKARWPKAL
IQFEDFRTEYASKLLERYRYQHLCFNDDIQ
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mRNA from alignment at E-fasciculatus_F_contig16062:562..2787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16062.4150.1 ID=mRNA_E-fasciculatus_F_contig16062.4150.1|Name=mRNA_E-fasciculatus_F_contig16062.4150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16062:562..2787- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTTCTACCGTGTGCTTATGGACAACTTCGCCGAGATGGCTGCGGTTGT
GTGCACCCCGACGGTAGGCTGGGCCTGCCTGAACTTCTCCCGCATGTTCC
GGATAGCGAGGGGCATGTACTTCTCGGCCAAGGACCGCGGGCACATGGTC
TCCATCGCCTACAACTGGCCCAGCCACGAGGTGATGGTGTACTATACTTA
TTGTAGTTGCGGCAGCAGGGGCATTGGTCGTGGGTCGTTGTGGTTGTTGC
TGGTGTTGCAGAAGGGTTTAGGGTTGCTAGGCGTTGGCTGGTTGTGGTTG
TTGCTGGATGGTGCTGCTGTATTTGCCAATTTTGGAAGCATCGGTTTGCC
CAATAATCCAGTAGCCGCGATCACCACCATCGCCACACACAAGAACAACC
AACAACAGCAGCAATATGACCGCCGCCGCCACCACCATCGCCACCAACAA
CAACAACAACCACCACCACCACCACCATCACCACCACCACCACCACCATC
ACCAATACGAACTAATCGGAACGCGGCTGGCCGGCCACCACCTGCTCCCA
TGCAGGTGGACGCGATCGTCGTCACGGACGGCTCGAGGATACTCGGCCTC
GGAGACCTGGGCATGAACGGCATGGGCATCTCGATCGGAAAGCTCGACCT
GTACGTGGCGGCCGCGGGCTTCCACCCGGCCCGCGTGCTCCCCTGCGTTA
TCGACGTCGGGACCAACAACAAGAAGCTACGGGCGGACGAGAGGTGACGA
CTGAGCGTAAGCTTATGCCTATGCCAAATCCTAAGCGTAAGCGTTAAGCG
CAGGCGTACGCGTTAAGCGTGAACGTTTAGTGTTAAGCGTAGACGAATGC
GTAACCGTAGGTGTATGCCTAAGCCTAAGCCTGAGAGTTGAGCTCAAGCG
TTTAAGCATGAGCGAATGTGTGAGAGTAACAGTAGGCGTAAGCGTAAGCG
CAACCGAACCGTAGGTGTGCGCTTTCTCTGCCTGGCGTAGGTGTGTACCC
GTCACGGTCGCTCCCAGTGTGTCTGATTCCGCCTACCGTACTGAACAGTC
TTGGCCTCTCGCCCGAACAGCCACAGCACGGTCGGGGGCTACGCGGAGGA
GAGTTTTCTTCCCCCCGTGGTGCGGCCGTACGTGCGTGTCCTAGATTTGA
CTTCGACCGCGGTGGCCGGCTGACCTTTTGACGAAGTAAAACCAACCTCG
TCATATTGTTGGGCGCGTGCCAACCAGCACGATCACATACGCTCGTAGCT
GATGATGGATAGGATAGAATGTGCAATCGTTTCTTCTCCATGGACGTCCC
CTGAAGGGGGGGGGGGTGAAGGGCCCAACAGAATACGTCCGGCCCCCGGT
TTCAGAGTACCGTGGGTGCGCACCCTCAAGGGCTTAAACAATGTATTCCG
ATCTGCGTGTCCCCTTTCGTTTCACCGCCGCACCGAATCAGTAGTCGTCG
ATACGCACGCATGGCGGACTCGAAATATGTATCAAATTTCATGGCTATTG
GTGGTGGTGCCCGTGCTGCCGCTACTTGTGCTCGTTGCGTGCTACTTGTT
ATCGTGTGATGCCTGTTTGGCTGCTGCTGCTGCTGTTGTTTCACTTGTTG
CTGCTGTTGATTTTGGTGCTGTTGCTTCCCTGTGTCGGACCGTACCCGTG
TCTGTTTGTCTCTATTGTTGTTGTTTTTTCTGGACAGCTACCTCGGTCTG
AACCAGGAGAGGCTAGAGGGAGACGAGTACCTCCAGGTGGTGGACGAGTT
CGTTGCCGCGGCGAAGGCCAGGTGGCCGAAGGCCTTGATTCAGGTAAAAT
GCTGTTGCTGCTGCTGCTGCTGTACATTGTTGCGTTATGTTGTTTTGTTG
TTGCTCTTGTCATGGAATGTTGCCGTTGTTTTCGAATTTCGCAAATTATG
TTTTTTCATCTGGTGCTTCCTGCCTGTTGCCGCATGTTGTCGACGTGGTT
GTTGTGCAGTCAATCGACGGTTCACGTTGCCGATGTTGTATGTTGTCGTC
GTGCAGTCCGTCCATGATATGGCGATGATAGGTGTGGTTGTACGCACATG
TTTTGTGGTTCTCGTTGGCACCTCAACCTACCCCATGTCCGTCGCGCGCC
GTGTTCTCGTCTCTTTTTGCTACCGTTTTCTTTTTTGCCCAGTTTGAAGA
CTTCCGGACGGAATATGCCAGCAAGCTCCTCGAGCGCTACCGCTACCAGC
ACCTCTGCTTCAACGATGACATACAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16062:562..2787-

>mRNA_E-fasciculatus_F_contig16062.4150.1 ID=mRNA_E-fasciculatus_F_contig16062.4150.1|Name=mRNA_E-fasciculatus_F_contig16062.4150.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16062:562..2787- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAACTTCGCCGAGATGGCTGCGGTTGTGTGCACCCCGACGGTAGG
CTGGGCCTGCCTGAACTTCTCCCGCATGTTCCGGATAGCGAGGGGCATGT
ACTTCTCGGCCAAGGACCGCGGGCACATGGTCTCCATCGCCTACAACTGG
CCCAGCCACGAGATGGACAACTTCGCCGAGATGGCTGCGGTTGTGTGCAC
CCCGACGGTAGGCTGGGCCTGCCTGAACTTCTCCCGCATGTTCCGGATAG
CGAGGGGCATGTACTTCTCGGCCAAGGACCGCGGGCACATGGTCTCCATC
GCCTACAACTGGCCCAGCCACGAGGTGGACGCGATCGTCGTCACGGACGG
CTCGAGGATACTCGGCCTCGGAGACCTGGGCATGAACGGCATGGGCATCT
CGATCGGAAAGCTCGACCTGTACGTGGCGGCCGCGGGCTTCCACCCGGCC
CGCGTGCTCCCCTGCGTTATCGACGTCGGGACCAACAACAAGAAGCTACG
GGCGGACGAGAGGTGGACGCGATCGTCGTCACGGACGGCTCGAGGATACT
CGGCCTCGGAGACCTGGGCATGAACGGCATGGGCATCTCGATCGGAAAGC
TCGACCTGTACGTGGCGGCCGCGGGCTTCCACCCGGCCCGCGTGCTCCCC
TGCGTTATCGACGTCGGGACCAACAACAAGAAGCTACGGGCGGACGAGAG
CTACCTCGGTCTGAACCAGGAGAGGCTAGAGGGAGACGAGTACCTCCAGG
TGGTGGACGAGTTCGTTGCCGCGGCGAAGGCCAGGTGGCCGAAGGCCTTG
ATTCAGCTACCTCGGTCTGAACCAGGAGAGGCTAGAGGGAGACGAGTACC
TCCAGGTGGTGGACGAGTTCGTTGCCGCGGCGAAGGCCAGGTGGCCGAAG
GCCTTGATTCAGTTTGAAGACTTCCGGACGGAATATGCCAGCAAGCTCCT
CGAGCGCTACCGCTACCAGCACCTCTGCTTCAACGATGACATACAGTTTG
AAGACTTCCGGACGGAATATGCCAGCAAGCTCCTCGAGCGCTACCGCTAC
CAGCACCTCTGCTTCAACGATGACATACAG
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