mRNA_E-fasciculatus_F_contig1606.4147.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1606.4147.1
Unique NamemRNA_E-fasciculatus_F_contig1606.4147.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1606.4147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1606contigE-fasciculatus_F_contig1606:15955..16453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1606.4147.1prot_E-fasciculatus_F_contig1606.4147.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1606 16044..16397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.6913238-UTR-E-fasciculatus_F_contig1606:15954..160431622928073.6913238-UTR-E-fasciculatus_F_contig1606:15954..16043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1606 15955..16043 +
1695995812.340886-UTR-E-fasciculatus_F_contig1606:15954..160431695995812.340886-UTR-E-fasciculatus_F_contig1606:15954..16043Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1606 15955..16043 +
1622928073.899709-UTR-E-fasciculatus_F_contig1606:16397..164531622928073.899709-UTR-E-fasciculatus_F_contig1606:16397..16453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1606 16398..16453 +
1695995812.363891-UTR-E-fasciculatus_F_contig1606:16397..164531695995812.363891-UTR-E-fasciculatus_F_contig1606:16397..16453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1606 16398..16453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.8859859-CDS-E-fasciculatus_F_contig1606:16043..163971622928073.8859859-CDS-E-fasciculatus_F_contig1606:16043..16397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1606 16044..16397 +
1695995812.3518093-CDS-E-fasciculatus_F_contig1606:16043..163971695995812.3518093-CDS-E-fasciculatus_F_contig1606:16043..16397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1606 16044..16397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1606.4147.1

>prot_E-fasciculatus_F_contig1606.4147.1 ID=prot_E-fasciculatus_F_contig1606.4147.1|Name=mRNA_E-fasciculatus_F_contig1606.4147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
MIFCLGISPRRQCFAPRRNTQGEDPLPGGRRPHPASSNPILPSSANPMVS
RIQQGQFFLQYNVFFRYLVYGNSHLRSFFDVELVRLEIKYPHLHLYDFFG
LANGMGQLLWCTCMSIV*
back to top

mRNA from alignment at E-fasciculatus_F_contig1606:15955..16453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1606.4147.1 ID=mRNA_E-fasciculatus_F_contig1606.4147.1|Name=mRNA_E-fasciculatus_F_contig1606.4147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=499bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1606:15955..16453+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCATTAGGAAGACCGGAGACCGTCCCTCCCACCCAACTTCAATAAGGCC
AGTTACTTTCCTGTTTGACTGTCCTTTCTTGTCACTATAATGATCTTTTG
CCTAGGCATCTCGCCGCGGCGCCAATGTTTCGCGCCGCGGCGAAATACCC
AGGGCGAGGACCCCCTGCCGGGCGGCAGGAGGCCTCATCCGGCCTCATCC
AATCCAATACTTCCATCAAGTGCTAATCCAATGGTGTCAAGAATACAACA
GGGACAATTCTTTCTCCAATACAACGTGTTTTTTCGGTACTTGGTCTATG
GAAACTCGCATCTTCGATCTTTTTTTGATGTTGAATTGGTTCGTTTGGAG
ATAAAGTATCCGCATCTACATTTGTACGACTTCTTTGGATTAGCTAATGG
AATGGGGCAATTACTGTGGTGTACTTGTATGAGCATTGTATGAGCGTTAT
TTGAACATATATTTTGAACATATATTTTGAGTGTTTTTTGGATATGGAT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1606:15955..16453+

>mRNA_E-fasciculatus_F_contig1606.4147.1 ID=mRNA_E-fasciculatus_F_contig1606.4147.1|Name=mRNA_E-fasciculatus_F_contig1606.4147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1606:15955..16453+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCTTTTGCCTAGGCATCTCGCCGCGGCGCCAATGTTTCGCGCCGCG
GCGAAATACCCAGGGCGAGGACCCCCTGCCGGGCGGCAGGAGGCCTCATC
CGGCCTCATCCAATCCAATACTTCCATCAAGTGCTAATCCAATGGTGTCA
AGAATACAACAGGGACAATTCTTTCTCCAATACAACGTGTTTTTTCGGTA
CTTGGTCTATGGAAACTCGCATCTTCGATCTTTTTTTGATGTTGAATTGG
TTCGTTTGGAGATAAAGTATCCGCATCTACATTTGTACGACTTCTTTGGA
TTAGCTAATGGAATGGGGCAATTACTGTGGTGTACTTGTATGAGCATTGT
ATGAATGATCTTTTGCCTAGGCATCTCGCCGCGGCGCCAATGTTTCGCGC
CGCGGCGAAATACCCAGGGCGAGGACCCCCTGCCGGGCGGCAGGAGGCCT
CATCCGGCCTCATCCAATCCAATACTTCCATCAAGTGCTAATCCAATGGT
GTCAAGAATACAACAGGGACAATTCTTTCTCCAATACAACGTGTTTTTTC
GGTACTTGGTCTATGGAAACTCGCATCTTCGATCTTTTTTTGATGTTGAA
TTGGTTCGTTTGGAGATAAAGTATCCGCATCTACATTTGTACGACTTCTT
TGGATTAGCTAATGGAATGGGGCAATTACTGTGGTGTACTTGTATGAGCA
TTGTATGA
back to top