mRNA_E-fasciculatus_F_contig16059.4146.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16059.4146.1
Unique NamemRNA_E-fasciculatus_F_contig16059.4146.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16059.4146.1 vs. uniprot
Match: D7FJT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT0_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 4.100e-91
Identity = 147/173 (84.97%), Postives = 152/173 (87.86%), Query Frame = 1 
Query:    1 MEDSEVCPASKLSGTRRCTLAGSTQRPPFSPLSPVHHSCTAPEEACREGEKRRKSEAQETPQVEARTGGDLSALEHEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEALVTPQAPTTQRAMAGRVETAKTG 519
            ME++ V PA + SGTRR TLAGS QRPPFSPLSPVHHSCTAPEE CREGE R KSEAQETP  EARTGGDLSALE EEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEA    QA  TQ++M GR E AKTG
Sbjct:    1 MEETSVPPAYQPSGTRRYTLAGSAQRPPFSPLSPVHHSCTAPEEGCREGEGRWKSEAQETPLAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEAFALSQASATQKSMTGRDEAAKTG 173
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BLAST of mRNA_E-fasciculatus_F_contig16059.4146.1 vs. uniprot
Match: A0A6H5L3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R7_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.800e-80
Identity = 138/173 (79.77%), Postives = 142/173 (82.08%), Query Frame = 1 
Query:    1 MEDSEVCPASKLSGTRRCTLAGSTQRPPFSPLSPVHHSCTAPEEACREGEKRRKSEAQETPQVEARTGGDLSALEHEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEALVTPQAPTTQRAMAGRVETAKTG 519
            MED +V      S TRR TL+GS QRPPFSPLSPVH SC APEE CREGE R  SEAQET   EARTGGDLSALE EEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWL QLQERSEQLL V+GRERRL LTLVRNEAL   QA  T +AMAGR E AKTG
Sbjct:    1 MEDKDV------SRTRRYTLSGSAQRPPFSPLSPVHRSCIAPEEGCREGEGRWNSEAQETQPAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLLQLQERSEQLLVVIGRERRLFLTLVRNEALALSQASATHKAMAGRDEAAKTG 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16059.4146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT0_ECTSI4.100e-9184.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3R7_9PHAE2.800e-8079.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16059contigE-fasciculatus_F_contig16059:1558..2551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010290.1
Exons2
Model size519
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.6427133-CDS-E-fasciculatus_F_contig16059:1557..18871622928073.6427133-CDS-E-fasciculatus_F_contig16059:1557..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16059 1558..1887 +
1695995812.312036-CDS-E-fasciculatus_F_contig16059:1557..18871695995812.312036-CDS-E-fasciculatus_F_contig16059:1557..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16059 1558..1887 +
1622928073.653475-CDS-E-fasciculatus_F_contig16059:2362..25511622928073.653475-CDS-E-fasciculatus_F_contig16059:2362..2551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16059 2363..2551 +
1695995812.3251112-CDS-E-fasciculatus_F_contig16059:2362..25511695995812.3251112-CDS-E-fasciculatus_F_contig16059:2362..2551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16059 2363..2551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16059.4146.1prot_E-fasciculatus_F_contig16059.4146.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16059 1558..2551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16059.4146.1

>prot_E-fasciculatus_F_contig16059.4146.1 ID=prot_E-fasciculatus_F_contig16059.4146.1|Name=mRNA_E-fasciculatus_F_contig16059.4146.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp
MEDSEVCPASKLSGTRRCTLAGSTQRPPFSPLSPVHHSCTAPEEACREGE
KRRKSEAQETPQVEARTGGDLSALEHEEWVKVSWKKGECREEIKLIAEAS
GLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEA
LVTPQAPTTQRAMAGRVETAKTG
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mRNA from alignment at E-fasciculatus_F_contig16059:1558..2551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16059.4146.1 ID=mRNA_E-fasciculatus_F_contig16059.4146.1|Name=mRNA_E-fasciculatus_F_contig16059.4146.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=994bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16059:1558..2551+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGACAGCGAAGTATGTCCTGCAAGCAAGTTGTCTGGAACGAGACG
ATGCACTCTGGCCGGCAGCACACAACGTCCGCCCTTCAGCCCATTGTCTC
CGGTGCACCACTCGTGCACCGCCCCCGAGGAGGCTTGCCGCGAGGGTGAA
AAACGGCGGAAATCAGAAGCACAGGAGACACCACAGGTAGAGGCGCGAAC
GGGAGGAGACTTGAGTGCGCTGGAGCACGAGGAGTGGGTGAAGGTCTCTT
GGAAGAAAGGAGAGTGCAGGGAGGAGATTAAGCTCATTGCAGAGGCGTCG
GGCCTTGCTTTCGATGACGCTCGAATCGTGGTGAGGATGGCAACAATACA
AGACACAAAAACCGAGGGATGCCGGCATGGGTTGGGATTGAGTCATACAT
GTGCCGAATCGAGAACACCCACATTCAAAGCTTGCTTCCGTAGTGACCAT
ACGCCATCACCCTGACAATTATCAGGAGCGGGCAGTATTTCTATGATGAC
ACGTGTACCAGAAAAGTACAGTACCGATGTAGCAAGAGAATGAACATTCG
ATTGTCGATTCTTATCCAACAGAATCGTAAGCACGAGTCTCAATTCCCAA
AACGCAAAACGCATGCTTACATCAATCTACACGCCCTGTGAAATCTTAAT
CTTCACAAACTGAGAGCGTCCAATTCTGAACATCACGACCGCGTCAAAGC
TCCGATTTCTTAGTTCGGGCATATACTATCCATCCATGCGGCTGGGCGCA
ACAAGTTGAAAGACATGACAATTTTTCAATTTTTCCTCTCTTCGTTTTGG
AGCAGGCCTTGCGTCTCTACAACCACTTCAACTGGCTCCCCCAGCTCCAA
GAACGGTCGGAACAGCTCTTGGCAGTGGTAGGCCGGGAACGGCGTCTATC
GCTGACCCTCGTCAGAAACGAAGCCCTTGTTACACCTCAAGCACCTACTA
CCCAAAGAGCAATGGCCGGTCGGGTCGAGACAGCTAAAACAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16059:1558..2551+

>mRNA_E-fasciculatus_F_contig16059.4146.1 ID=mRNA_E-fasciculatus_F_contig16059.4146.1|Name=mRNA_E-fasciculatus_F_contig16059.4146.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16059:1558..2551+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGACAGCGAAGTATGTCCTGCAAGCAAGTTGTCTGGAACGAGACG
ATGCACTCTGGCCGGCAGCACACAACGTCCGCCCTTCAGCCCATTGTCTC
CGGTGCACCACTCGTGCACCGCCCCCGAGGAGGCTTGCCGCGAGGGTGAA
AAACGGCGGAAATCAGAAGCACAGGAGACACCACAGGTAGAGGCGCGAAC
GGGAGGAGACTTGAGTGCGCTGGAGCACGAGGAGTGGGTGAAGGTCTCTT
GGAAGAAAGGAGAGTGCAGGGAGGAGATTAAGCTCATTGCAGAGGCGTCG
GGCCTTGCTTTCGATGACGCTCGAATCGTGATGGAAGACAGCGAAGTATG
TCCTGCAAGCAAGTTGTCTGGAACGAGACGATGCACTCTGGCCGGCAGCA
CACAACGTCCGCCCTTCAGCCCATTGTCTCCGGTGCACCACTCGTGCACC
GCCCCCGAGGAGGCTTGCCGCGAGGGTGAAAAACGGCGGAAATCAGAAGC
ACAGGAGACACCACAGGTAGAGGCGCGAACGGGAGGAGACTTGAGTGCGC
TGGAGCACGAGGAGTGGGTGAAGGTCTCTTGGAAGAAAGGAGAGTGCAGG
GAGGAGATTAAGCTCATTGCAGAGGCGTCGGGCCTTGCTTTCGATGACGC
TCGAATCGTGGCCTTGCGTCTCTACAACCACTTCAACTGGCTCCCCCAGC
TCCAAGAACGGTCGGAACAGCTCTTGGCAGTGGTAGGCCGGGAACGGCGT
CTATCGCTGACCCTCGTCAGAAACGAAGCCCTTGTTACACCTCAAGCACC
TACTACCCAAAGAGCAATGGCCGGTCGGGTCGAGACAGCTAAAACAGGTG
CCTTGCGTCTCTACAACCACTTCAACTGGCTCCCCCAGCTCCAAGAACGG
TCGGAACAGCTCTTGGCAGTGGTAGGCCGGGAACGGCGTCTATCGCTGAC
CCTCGTCAGAAACGAAGCCCTTGTTACACCTCAAGCACCTACTACCCAAA
GAGCAATGGCCGGTCGGGTCGAGACAGCTAAAACAGGT
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