mRNA_E-fasciculatus_F_contig16029.4131.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16029.4131.1
Unique NamemRNA_E-fasciculatus_F_contig16029.4131.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16029.4131.1 vs. uniprot
Match: A0A6H5K1L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L1_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.370e-62
Identity = 106/144 (73.61%), Postives = 116/144 (80.56%), Query Frame = 1 
Query:  112 QPLLQRRATLNYAISSPFGSSDAKVVQEHTLQTLLDNRHQXXXXXXXXXXXGGICYTESDCITGFPMIPGDLTVKTTFLVTPVEDGGHAERVRVRVGVVVEEIELPQRLQFLSKRVGKIVGNGGRKQAEKWLGEMIKAGSPGED 543
            Q LLQRRATLNYAI+SPF SSDAKVVQEHTL   LD+RHQ           GGICYTE DCITGFPM+PGDL+VK TFLVT V+DGGH ERV VRV VVV+E ELP+RL+FLSKRV  IVG+GGRKQAEKWLGEM+K GSP  D
Sbjct:   61 QLLLQRRATLNYAITSPFDSSDAKVVQEHTL---LDDRHQEGGG-------GGICYTERDCITGFPMVPGDLSVKPTFLVTRVDDGGHTERVHVRVEVVVKETELPKRLRFLSKRVSDIVGDGGRKQAEKWLGEMVKEGSPVAD 194
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16029.4131.1 vs. uniprot
Match: D8LD38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD38_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 4.920e-55
Identity = 91/113 (80.53%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:  208 TLLDNRHQXXXXXXXXXXXGGICYTESDCITGFPMIPGDLTVKTTFLVTPVEDGGHAERVRVRVGVVVEEIELPQRLQFLSKRVGKIVGNGGRKQAEKWLGEMIKAGSPGEDA 546
            TLLD+RHQ           GGICYTESDCITGFPM+PGDL+VKTTFLVTPVEDGGH ERVRVRVGVVVEEIELP+RL+FLSKRV KIVGNGGRKQAEKWLGEM+K GSP  DA
Sbjct:   98 TLLDDRHQKGGGG------GGICYTESDCITGFPMVPGDLSVKTTFLVTPVEDGGHEERVRVRVGVVVEEIELPKRLRFLSKRVSKIVGNGGRKQAEKWLGEMVKEGSPAADA 204
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16029.4131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1L1_9PHAE1.370e-6273.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD38_ECTSI4.920e-5580.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16029contigE-fasciculatus_F_contig16029:2283..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000340.1
Exons1
Model size549
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.8922455-CDS-E-fasciculatus_F_contig16029:2282..28311622928071.8922455-CDS-E-fasciculatus_F_contig16029:2282..2831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16029 2283..2831 -
1695995811.5780315-CDS-E-fasciculatus_F_contig16029:2282..28311695995811.5780315-CDS-E-fasciculatus_F_contig16029:2282..2831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16029 2283..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16029.4131.1prot_E-fasciculatus_F_contig16029.4131.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16029 2283..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16029.4131.1

>prot_E-fasciculatus_F_contig16029.4131.1 ID=prot_E-fasciculatus_F_contig16029.4131.1|Name=mRNA_E-fasciculatus_F_contig16029.4131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=183bp
QQQQQQQQQQQQQQQQPQAEQDQRHQQHQDRTPQPRPQPLLQRRATLNYA
ISSPFGSSDAKVVQEHTLQTLLDNRHQQDGGGGGGGSSGGICYTESDCIT
GFPMIPGDLTVKTTFLVTPVEDGGHAERVRVRVGVVVEEIELPQRLQFLS
KRVGKIVGNGGRKQAEKWLGEMIKAGSPGEDA*
back to top

mRNA from alignment at E-fasciculatus_F_contig16029:2283..2831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16029.4131.1 ID=mRNA_E-fasciculatus_F_contig16029.4131.1|Name=mRNA_E-fasciculatus_F_contig16029.4131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=549bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16029:2283..2831- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
ACAAGCGGAGCAAGATCAGCGGCATCAGCAACACCAAGACCGTACTCCTC
AGCCGCGACCCCAGCCCTTGCTGCAGCGCAGGGCCACGCTGAACTACGCC
ATCTCGTCGCCGTTCGGCTCCTCCGACGCCAAGGTCGTGCAGGAGCACAC
GCTGCAGACGCTGCTCGACAACCGCCACCAGCAGGACGGCGGCGGCGGCG
GCGGCGGCAGCAGTGGCGGGATCTGCTACACGGAAAGCGACTGCATCACG
GGTTTTCCCATGATTCCGGGGGACCTCACCGTAAAGACGACGTTCCTGGT
TACCCCGGTGGAAGACGGGGGGCACGCGGAGCGCGTTCGCGTGAGGGTAG
GAGTTGTCGTGGAGGAGATCGAACTCCCGCAACGGTTACAGTTTTTGAGC
AAGCGGGTCGGCAAGATCGTTGGAAACGGCGGGAGAAAGCAGGCAGAGAA
GTGGCTAGGGGAGATGATCAAGGCCGGGTCACCGGGGGAAGACGCATGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16029:2283..2831-

>mRNA_E-fasciculatus_F_contig16029.4131.1 ID=mRNA_E-fasciculatus_F_contig16029.4131.1|Name=mRNA_E-fasciculatus_F_contig16029.4131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16029:2283..2831- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
ACAAGCGGAGCAAGATCAGCGGCATCAGCAACACCAAGACCGTACTCCTC
AGCCGCGACCCCAGCCCTTGCTGCAGCGCAGGGCCACGCTGAACTACGCC
ATCTCGTCGCCGTTCGGCTCCTCCGACGCCAAGGTCGTGCAGGAGCACAC
GCTGCAGACGCTGCTCGACAACCGCCACCAGCAGGACGGCGGCGGCGGCG
GCGGCGGCAGCAGTGGCGGGATCTGCTACACGGAAAGCGACTGCATCACG
GGTTTTCCCATGATTCCGGGGGACCTCACCGTAAAGACGACGTTCCTGGT
TACCCCGGTGGAAGACGGGGGGCACGCGGAGCGCGTTCGCGTGAGGGTAG
GAGTTGTCGTGGAGGAGATCGAACTCCCGCAACGGTTACAGTTTTTGAGC
AAGCGGGTCGGCAAGATCGTTGGAAACGGCGGGAGAAAGCAGGCAGAGAA
GTGGCTAGGGGAGATGATCAAGGCCGGGTCACCGGGGGAAGACGCATGAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCA
CAAGCGGAGCAAGATCAGCGGCATCAGCAACACCAAGACCGTACTCCTCA
GCCGCGACCCCAGCCCTTGCTGCAGCGCAGGGCCACGCTGAACTACGCCA
TCTCGTCGCCGTTCGGCTCCTCCGACGCCAAGGTCGTGCAGGAGCACACG
CTGCAGACGCTGCTCGACAACCGCCACCAGCAGGACGGCGGCGGCGGCGG
CGGCGGCAGCAGTGGCGGGATCTGCTACACGGAAAGCGACTGCATCACGG
GTTTTCCCATGATTCCGGGGGACCTCACCGTAAAGACGACGTTCCTGGTT
ACCCCGGTGGAAGACGGGGGGCACGCGGAGCGCGTTCGCGTGAGGGTAGG
AGTTGTCGTGGAGGAGATCGAACTCCCGCAACGGTTACAGTTTTTGAGCA
AGCGGGTCGGCAAGATCGTTGGAAACGGCGGGAGAAAGCAGGCAGAGAAG
TGGCTAGGGGAGATGATCAAGGCCGGGTCACCGGGGGAAGACGCATGA
back to top