mRNA_E-fasciculatus_F_contig1602.4127.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1602.4127.1
Unique NamemRNA_E-fasciculatus_F_contig1602.4127.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 1.780e-201
Identity = 359/416 (86.30%), Postives = 369/416 (88.70%), Query Frame = 1 
Query:  196 SSRPAVPETAVKAAPRSDKLPKKKRKAVASADTKGVGNLHKSNWATLAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PRAEMGSXXXXXXXXXTTPNFFSVSRNTTVSGASSTAGVSGKAGKKRKRTAGAG-GIGSPAESTNGSAPNHVTGGKQGGRPGANNSTKWPRSNVLNLAFQAQKEXXXXXXXXXXXXXXXXXXXXKGRGKRGGSEQALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAAGKMRGRKGFVDQQGP 1434
            SSRPAVPETA KA PRSDKLPKKKRKAVASAD KGVGNLHKSNWA LAAG XXXXXXXXXXXXXXXXXXXXXXXXX      PRAE+GS         TTPNFFSV+RNT VSG+SST GVSGKAGKKR RTAGAG GIG+   STNG APNHVTGG +   PGAN STK PRSNVLNLAFQAQKE XXXXXXXXXXXX       KGRGKRGGSEQALTAAEKAQYV+LDCEMVGVGPGGCRSALARCCLVDWDG+TIYDKHVTPNERVTDFRTFVSGVKANHLKGG+RLRQCQEEVAAILKDKVL+GHALTNDLKA    LMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYK+ARFEWEKSLSAAGKMRGRK FVDQQGP
Sbjct:   48 SSRPAVPETAGKATPRSDKLPKKKRKAVASADPKGVGNLHKSNWAMLAAGGXXXXXXXXXXXXXXXXXXXXXXXXXQQGSERPRAEIGSSNSNVMAT-TTPNFFSVNRNTAVSGSSSTTGVSGKAGKKRIRTAGAGVGIGALTASTNGHAPNHVTGGTREEHPGANKSTKRPRSNVLNLAFQAQKEEXXXXXXXXXXXXAKHTGGVKGRGKRGGSEQALTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKA----LMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKLARFEWEKSLSAAGKMRGRKSFVDQQGP 458
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A6H5KQ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ94_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.680e-89
Identity = 208/257 (80.93%), Postives = 213/257 (82.88%), Query Frame = 1 
Query:  202 RPAVPETAVKAAPRSDKLPKKKRKAVASADTKGVGNLHKSNWATLAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PRAEMGSXXXXXXXXXTTPNFFSVSRNTTVSGASSTAGVSGKAGKKRKRTAGAGG-IGSPAESTNGSAPNHVTGGKQGGRPGANNSTKWPRSNVLNLAFQAQKEXXXXXXXXXXXXXXXXXXXXKGRGKRGGSEQALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTI 963
            RPA PETA KAAPRSD LPKKKRKAVASADTKGVGNLHKSNWA LAAG  XXXXXXXXXXXXXXXXXXXXXX        PRAE+GS         TTP FFSV+RNT VSGAS+TAGVSGKAGKKRKRT GAG  IGSP  STNG APNHVTGGKQ  RPG N STK PRSNVLNLAFQAQKEXXXXXXXXXXXXX       KGRGKRGGSE ALTAAEKAQYV+LDCEMVGVGPGGCRSALARCCLVDWDGNT+
Sbjct:   50 RPAAPETAEKAAPRSDMLPKKKRKAVASADTKGVGNLHKSNWAMLAAGGAXXXXXXXXXXXXXXXXXXXXXXAKQQGSKRPRAEIGSRNSNGMAT-TTPKFFSVNRNTAVSGASTTAGVSGKAGKKRKRTTGAGAAIGSPTASTNGRAPNHVTGGKQEERPGTNKSTKRPRSNVLNLAFQAQKEXXXXXXXXXXXXXAKHPGGVKGRGKRGGSEPALTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 305
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.670e-60
Identity = 107/184 (58.15%), Postives = 132/184 (71.74%), Query Frame = 1 
Query:  829 SEQALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSL 1380
            S   +T  EK+ YV LDCEMVGVG GG RSALAR  LVD+DG  IYD+HV P ER+TDFRT+VSGVKA HLK  L L++C  +VA ++K K+++GHAL NDL+     LM+ HP    RDTA YR Y ++HGK GGKLRPR LK L+ + L   IQ G+H+ A+DA+AAM LY+  R EWEK L
Sbjct:   90 SADDMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQV----LMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKHDSADDARAAMLLYRAQRTEWEKEL 269
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A836CG98_9STRA (RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG98_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.700e-59
Identity = 111/192 (57.81%), Postives = 134/192 (69.79%), Query Frame = 1 
Query:  862 QYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGG--LRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAA--GKMRGRKGFVDQ 1425
            QYV+LDCEMVG G  G  SALA+CC+ DW GNT+Y  +V P ERVTDFRTFVSG++A HLKG   + L +CQ+ VAAI K ++++GHAL NDLKA    LM+SHP    RDTATYRPY++ +    GKL PRSLK L+ E L R IQ G+H+PAEDA AAMDL+K+   EWE SL     GK  G    V Q
Sbjct:   46 QYVALDCEMVGTGVSGRHSALAQCCITDWHGNTLYCSYVRPPERVTDFRTFVSGIRATHLKGADAVTLLECQKAVAAITKGRIIVGHALHNDLKA----LMLSHPKNMIRDTATYRPYKRPN--RAGKLAPRSLKHLALEFLGREIQGGEHSPAEDAIAAMDLFKLKWAEWETSLKQGRVGKKAGASKPVRQ 231
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.190e-53
Identity = 95/185 (51.35%), Postives = 131/185 (70.81%), Query Frame = 1 
Query:  835 QALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAA 1389
            Q +   + ++ V++DCEMVGVG  G RS LARC +VD+DGN +YD+HV P E+VTDFRT VSG+++  L+  +   +CQ++V AILKDK+L+GHAL NDL+A    LM++HP    RDT  YRPY +     G KL P++L+ L+QE LD+ IQTG+H+  EDA+  ++LYK A   WEK+L AA
Sbjct:   66 QTIDWIDTSKIVAMDCEMVGVGLSGTRSVLARCSIVDFDGNVVYDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQA----LMLTHPKPMIRDTTKYRPYMRRKVN-GTKLLPKALRHLAQEVLDKTIQTGEHDSVEDARTTLELYKKAMVPWEKALKAA 245
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.310e-52
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 1 
Query:  853 EKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAA 1389
            + +  V++DCEMVGVG  G RS LARC +VD+DGN +YDKHV P ERVTDFRT VSG+++ HL+  +   QCQ+EVA I +DK+L+GHAL ND++A    LM++HP    RDT  YRPY +     G KL P+SLK L+ E L + IQTG+H+  EDA+ +++LYK A   WEK++ A+
Sbjct:   61 DTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQA----LMLTHPKGMIRDTTKYRPYMRRKVN-GTKLFPKSLKNLALEVLKKTIQTGEHDSVEDARTSLELYKHAMAPWEKAIKAS 234
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A024GQY3_9STRA (RNA exonuclease 4 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GQY3_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.680e-52
Identity = 93/176 (52.84%), Postives = 128/176 (72.73%), Query Frame = 1 
Query:  853 EKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSL 1380
            +K+  +++DCEMVGVG  G + ALARC ++D+DGN ++D+ V+P E+VTD+RT VSG++    K  +   QC +EV A+LKDK+++GHAL ND +A    LM+SHP R TRDTA YRPY + + K G KL PRSLK L+ E L R IQ G+H+  EDA+AA++LYK  +F+WEK L
Sbjct:   89 KKSDILAMDCEMVGVGTDGRQDALARCSIIDFDGNVLFDRTVSPVEKVTDYRTRVSGIRPRSFKNAISFSQCLKEVGALLKDKIVVGHALKNDFQA----LMLSHPKRQTRDTARYRPYMR-YRKNGTKLLPRSLKTLAAEFLKRSIQEGEHDSVEDARAALELYKRQQFDWEKYL 259
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BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A6U3UEZ7_9STRA (RNA exonuclease 4 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UEZ7_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.340e-51
Identity = 99/203 (48.77%), Postives = 133/203 (65.52%), Query Frame = 1 
Query:  820 RGGSEQALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLK----GGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTG--QHNPAEDAKAAMDLYKIARFEWEKSLSAAGKMRGRK 1410
            R  +E+ +   EKA+YV+LDCEMVG+G  G  S LAR  LVDW GN + D  V   +RVTDFRT VSG+KA H+K      +  + C+ +V AILK+K+L+GHAL ND  A    LMM+HP    RDTA Y+P+  + G+ GGKLRPR L+ L+++ L R IQ     H+  +DAKAAMDLYK+ R +WEK + +  K + +K
Sbjct:  148 RQAAEEKIPPEEKAKYVALDCEMVGIGTDGKTSCLARASLVDWYGNVLLDTFVLVPDRVTDFRTHVSGIKAKHIKETNQNAMTPKDCRMKVGAILKNKILVGHALRNDFAA----LMMNHPAADIRDTAKYKPFMVSRGRNGGKLRPRKLRDLTKQFLKRDIQVQGESHDSIDDAKAAMDLYKVVRVQWEKDIQSRLKGKNKK 346
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A485LPN0_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPN0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.240e-50
Identity = 91/185 (49.19%), Postives = 127/185 (68.65%), Query Frame = 1 
Query:  835 QALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAA 1389
            Q +   + A  V++DCEMVGVG GG RS LARC +V +DG  +YD+HV P E+VTDFRT VSG+++  L+  +   +CQ +V  +LKDK+L+GHA+ NDL+A    LM++HP    RDT  YRPY +     G KL P++L+ L+QE LD+ IQTG+H+  EDA+  ++LYK A   WEK+L A+
Sbjct:   83 QTIDWIDTALIVAMDCEMVGVGVGGTRSVLARCSIVGFDGTVLYDEHVKPLEKVTDFRTHVSGIRSKSLRNAIPFAKCQNDVGELLKDKILVGHAVRNDLQA----LMLTHPKPMLRDTTKYRPYMRRRMN-GTKLLPKALRHLAQEVLDKTIQTGEHDSVEDARTTLELYKRAMVPWEKALKAS 262
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Match: A0A7S1YYA6_TRICV (RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYA6_TRICV)

HSP 1 Score: 184 bits (466), Expect = 7.440e-50
Identity = 91/184 (49.46%), Postives = 127/184 (69.02%), Query Frame = 1 
Query:  838 ALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTIYDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIGHALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTG--QHNPAEDAKAAMDLYKIARFEWEKSLS 1383
            A+   E+++YV++DCEMVG+G  G  SALAR  LVDWDG  + D  V   +RVTDFRT+VSGV++  ++  +    C+E+VA ILK KVL+GH+L NDL A    L++ HP    RDTA+YRPY K  G+ GGK+RPR L+ L++E+L   IQ    +H+  +DA+AAM+LYK AR  WE+ ++
Sbjct:   60 AVPEPERSRYVAVDCEMVGIGSAGRTSALARTSLVDWDGKVLLDTFVRVPDRVTDFRTWVSGVRSKDIRNAMEPEDCREKVAEILKGKVLVGHSLKNDLSA----LLLDHPRGDRRDTASYRPYMKPSGRGGGKMRPRRLRDLAEEYLGISIQGEGEEHSSIDDARAAMELYKFARTRWEREVA 239
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1602.4127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ6_ECTSI1.780e-20186.30RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KQ94_9PHAE2.680e-8980.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7U6T2_9STRA3.670e-6058.15RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A836CG98_9STRA5.700e-5957.81RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6G0X6W8_9STRA3.190e-5351.35RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A1V9YXD8_9STRA1.310e-5252.51RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta... [more]
A0A024GQY3_9STRA4.680e-5252.84RNA exonuclease 4 n=2 Tax=Albugo candida TaxID=653... [more]
A0A6U3UEZ7_9STRA4.340e-5148.77RNA exonuclease 4 n=3 Tax=Ditylum brightwellii Tax... [more]
A0A485LPN0_9STRA6.240e-5049.19RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A7S1YYA6_TRICV7.440e-5049.46RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chine... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1602contigE-fasciculatus_F_contig1602:2362..5910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score634.8
Seed ortholog evalue3.1e-179
Seed eggNOG ortholog2880.D8LAZ6
KEGG koko:K18327
EggNOG free text desc.exonuclease activity
EggNOG OGsCOG0847@1,KOG2249@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExonuclease
Ec32 orthologEc-27_005830.1
Exons4
Model size2102
Cds size1374
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1602.4127.1prot_E-fasciculatus_F_contig1602.4127.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1602 2425..5245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.4198937-UTR-E-fasciculatus_F_contig1602:2361..24241622928071.4198937-UTR-E-fasciculatus_F_contig1602:2361..2424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 2362..2424 +
1695995811.398853-UTR-E-fasciculatus_F_contig1602:2361..24241695995811.398853-UTR-E-fasciculatus_F_contig1602:2361..2424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 2362..2424 +
1622928071.5237753-UTR-E-fasciculatus_F_contig1602:5245..59101622928071.5237753-UTR-E-fasciculatus_F_contig1602:5245..5910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 5246..5910 +
1695995811.4563007-UTR-E-fasciculatus_F_contig1602:5245..59101695995811.4563007-UTR-E-fasciculatus_F_contig1602:5245..5910Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1602 5246..5910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928071.4358265-CDS-E-fasciculatus_F_contig1602:2424..33231622928071.4358265-CDS-E-fasciculatus_F_contig1602:2424..3323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 2425..3323 +
1695995811.4106464-CDS-E-fasciculatus_F_contig1602:2424..33231695995811.4106464-CDS-E-fasciculatus_F_contig1602:2424..3323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 2425..3323 +
1622928071.4548807-CDS-E-fasciculatus_F_contig1602:3888..40751622928071.4548807-CDS-E-fasciculatus_F_contig1602:3888..4075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 3889..4075 +
1695995811.4195218-CDS-E-fasciculatus_F_contig1602:3888..40751695995811.4195218-CDS-E-fasciculatus_F_contig1602:3888..4075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 3889..4075 +
1622928071.4721878-CDS-E-fasciculatus_F_contig1602:4503..46681622928071.4721878-CDS-E-fasciculatus_F_contig1602:4503..4668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 4504..4668 +
1695995811.4283407-CDS-E-fasciculatus_F_contig1602:4503..46681695995811.4283407-CDS-E-fasciculatus_F_contig1602:4503..4668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 4504..4668 +
1622928071.4879317-CDS-E-fasciculatus_F_contig1602:5122..52451622928071.4879317-CDS-E-fasciculatus_F_contig1602:5122..5245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 5123..5245 +
1695995811.4410317-CDS-E-fasciculatus_F_contig1602:5122..52451695995811.4410317-CDS-E-fasciculatus_F_contig1602:5122..5245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1602 5123..5245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1602.4127.1

>prot_E-fasciculatus_F_contig1602.4127.1 ID=prot_E-fasciculatus_F_contig1602.4127.1|Name=mRNA_E-fasciculatus_F_contig1602.4127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=458bp
MTVKKGSSTAKVASSADTTLWEQLLSRRGGTQPTATTTGAAGAASSRPAV
PETAVKAAPRSDKLPKKKRKAVASADTKGVGNLHKSNWATLAAGGGATAA
VSNGHPTTDKSKKKRAKQQQGSKRPRAEMGSSNSNSMATTTTPNFFSVSR
NTTVSGASSTAGVSGKAGKKRKRTAGAGGIGSPAESTNGSAPNHVTGGKQ
GGRPGANNSTKWPRSNVLNLAFQAQKEEAAAAAATVAAGGAKHNGGGKGR
GKRGGSEQALTAAEKAQYVSLDCEMVGVGPGGCRSALARCCLVDWDGNTI
YDKHVTPNERVTDFRTFVSGVKANHLKGGLRLRQCQEEVAAILKDKVLIG
HALTNDLKAWIDALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKL
LSQEHLDRPIQTGQHNPAEDAKAAMDLYKIARFEWEKSLSAAGKMRGRKG
FVDQQGP*
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mRNA from alignment at E-fasciculatus_F_contig1602:2362..5910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1602.4127.1 ID=mRNA_E-fasciculatus_F_contig1602.4127.1|Name=mRNA_E-fasciculatus_F_contig1602.4127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3549bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1602:2362..5910+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCTCGCACCTCTCCTTTCCTGCTGGCTCACTTGTGAGAGCTAGCTCGC
CACCACAACAACCATGACGGTAAAGAAAGGCTCCTCGACCGCGAAGGTCG
CTTCGTCAGCTGACACCACCCTGTGGGAGCAGCTCTTATCGCGAAGAGGT
GGTACACAGCCTACTGCTACTACTACTGGTGCCGCTGGTGCCGCAAGCTC
GAGGCCTGCTGTCCCCGAGACAGCAGTGAAGGCGGCACCTCGTTCCGACA
AGCTGCCCAAGAAGAAGCGCAAAGCTGTGGCCTCGGCAGATACTAAAGGA
GTGGGAAACTTGCATAAAAGCAACTGGGCCACGCTGGCTGCTGGAGGCGG
CGCCACCGCTGCGGTAAGCAATGGGCACCCAACCACCGACAAAAGCAAGA
AGAAGAGGGCGAAACAGCAGCAGGGTAGCAAGCGGCCGCGAGCTGAGATG
GGGTCTAGCAACAGCAACAGCATGGCCACCACCACCACGCCCAACTTCTT
CTCCGTCAGCCGGAATACTACCGTCTCCGGAGCCAGCAGCACCGCCGGGG
TCAGCGGCAAGGCCGGCAAGAAGCGTAAACGGACCGCCGGCGCCGGCGGC
ATAGGCTCGCCCGCCGAGAGTACCAACGGCAGTGCTCCCAACCATGTCAC
CGGAGGCAAGCAGGGGGGGCGCCCAGGGGCGAACAACAGCACCAAGTGGC
CGCGCTCCAACGTCCTTAACCTCGCCTTCCAGGCACAAAAGGAAGAGGCT
GCCGCCGCTGCCGCTACCGTCGCCGCGGGCGGAGCGAAGCACAACGGCGG
AGGCAAGGGGCGAGGGAAGAGGGGTGGATCTGAGCAGGCGTTGACGGCGG
CAGAAAAGGCGCAGTACGTGTCCCTGGATTGCGAGATGGTTGGCGTCGGG
CCTGGGGGCTGCCGGAGCGCGCTCGCGCGATGTTGCCTCGTGGACTGGGA
CGGAAACACCATGTGAGTCGCGGCACCTTGGTGTTTGGCTTCGTGAAATA
GGGTTGCGTAGACCCTGGGGTAACGGGAGGGACATGCGTGTGCATGGATG
TGTTGCGTTATTATGTGGTTGCGGAGTCCGCTAGGTCGTGACACGACTGC
TGTAGCTGTTGATGGAAGCCAAGCTGGCGAGCGTGCATCTGCATGTACCT
CGTCTACTTCTTTGTTTCTTTGTTTGCTCTGTCTTTGCTCTGTCTTGTGA
GTTCCTTGGCCACCTTTGACGTACCCTTGGTTCCGATACTTGTTGCCAGA
TGCCGGCCTCTATAACTTGCGCTTCTGCTGTTCAGATCTTCTTGTACAAG
TTGGTATGGGGTGGGATTCGATTCGAAGCGTGTTAATTCCACGGCACCCC
CAAAGCCACCACGCACTATTTAGTATGATACTCTTGCCACGCATTTTCTG
CATGTCCAGGCAACCTTGACCACCGCTGCGAAGGATATGACCCCCCCCCC
TCTCCGAACCGATTCCGCGTCACGACTTTCTGATCTTGGCCGCGCACGCC
CCCTGTTGTTGTGTTCCCCTGGACCAGCTACGACAAGCACGTGACCCCCA
ACGAGCGCGTTACAGACTTCCGAACCTTCGTTAGCGGCGTCAAGGCGAAC
CACCTCAAGGGAGGGCTGCGCCTGCGGCAGTGCCAGGAGGAAGTGGCGGC
GATTTTGAAGGACAAGGTTCTCATCGGCCACGCGCTGACCAACGATCTCA
AGGCATGGATTGATGTCTGAATGAGAGAGCACCTAGTAGGCCTGAGTAGC
TGAGTACCGTAGTGCCATAAAAGGTTCGCGTCTGCTTTGTTTTGTGTGTT
GTTCGCACGACCGCTGGATTGTTGATTGCTTTGGGAATCTTTCGCGAGCA
TGTGGTTGGTATTCGATTCGGTAGGTTTTTGTCGGTAGCTGCAAAAAAGG
CACGTATATACTCGCCTTCCCTCCCTGCAGATGAAAGAAAGAATGCGTGA
TGTTGTAAAACCTCCGTTTCCCTTGAGCTTGTCGCCCTCTTGCCCATAAG
AGAGAAAGACAACCAGCCACCCGTAAAAACGTTGTCGGTAGGCCTTGCGT
GAGCGCTGCTTTGCATCGCACTCGACTTTCCACCGACACACCCCAACTTT
CAGTTTTTTTTTGCGATGCCATGGCGCTTTGATCTCCCTCAGGCTTTGAT
GATGAGCCACCCCCCGCGTTCTACGCGAGACACGGCGACGTATCGGCCGT
ACCAGAAGGCGCACGGCAAGGCCGGCGGCAAGCTGCGCCCAAGGTCCCTC
AAGCTGCTCTCCCAGGAACACCTCGACCGTCCCATTCAGACAGGCCAGCA
CAACCCAGTGAGTAAATGGATGCATACGTGTTCCGTTGTGATCATATCAC
CGCTGTCCGGGTATCGTCGGCGTTGCCTGTGTGTTGTTTGTTTAGCTGTC
AGCCGCGGTCTCGAAAGGGTTTGCTACATGGAGGGTAACACACTTCTTGC
TGTTGGGAGACCACCGTAACTAGAAACAGACATGCACATTGGCACAGGTG
CGGACAAAAACAAGCCTGCATATTTCTCGACTCTAGTTCAATTCGCCGGT
CACCCTGGTTGGTATTGTTGTCTTCACATTCGCAGCCGTTCCGGTCTCTG
CGAATATCCGAAGCCGTCGACCTGACGCGGCGGCTTACGCCACCATAGGT
CAAGAACCCCAAAACTACATCGCGAAAGAACACCACACGTGATTTTGCCC
TTCTTGCCATTGCTGTATTCAAAGTATTTGTGCTTCCCTCTCCTTTCGTG
CTGGGCCACAGGCGGAGGATGCCAAGGCCGCCATGGACCTGTACAAAATA
GCGCGCTTCGAGTGGGAGAAGTCGCTCTCGGCGGCAGGAAAAATGCGAGG
CCGAAAGGGCTTCGTGGACCAGCAAGGGCCCTAAGATCTTCGGGGCGCGG
TAGTAGGCGTTCTAGCGAAGGCAGGGGGGCATTCCTTTTTTCCCGGCATG
TGAAGCGAGTTGTTTTTCTGCGTGAGGCGAGTGGGTCCCCTGAGGAGCAA
CGAGGTTTGACACAAGTGTACCGTAGGTGACATGGCACAAGATACCACAC
CCCCTGGAGCCATTTTCAAACCCTCAGTACTCCACGACGAAGAAGATGCT
GCAATCAAACGATACGTCGTTGGAAAGCTCTCGACGAGACAGTACCAACG
CCGCCATTTTTCGGCACCGTCACTCTTTGTCCTGCCGAGTAACTTTGAAA
TCCGGGCCAGGGGGTGTGGTATCGTATGCAACCAACGGTAGCGTGTATTT
GGGAACATGGCGCGGACGACGTGACCCTGTTTGACTCGGCGTAAGTTGGG
GTCGCCGCCGACATGTGCGCAGGAGACGATGGCCCGGGACTGCTCTATCG
TGTGCTGGACTGTTTTTTGCGTATGCGTGTGTATGTCCTGGCGTGGATTC
TCGAAAATGAAAGTTGTATCGAACGCTGGCATTGTCGGCTTGTCGATGAT
GGCCCGCACATAGTACGCTGCTGCATGTGCAACTAGAGTTGTGCGCGTTG
CCTCGTAGCGACGCTGCCAGCCACGCCTGAAGTGCACCTAAAAGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1602:2362..5910+

>mRNA_E-fasciculatus_F_contig1602.4127.1 ID=mRNA_E-fasciculatus_F_contig1602.4127.1|Name=mRNA_E-fasciculatus_F_contig1602.4127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2748bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1602:2362..5910+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGGTAAAGAAAGGCTCCTCGACCGCGAAGGTCGCTTCGTCAGCTGA
CACCACCCTGTGGGAGCAGCTCTTATCGCGAAGAGGTGGTACACAGCCTA
CTGCTACTACTACTGGTGCCGCTGGTGCCGCAAGCTCGAGGCCTGCTGTC
CCCGAGACAGCAGTGAAGGCGGCACCTCGTTCCGACAAGCTGCCCAAGAA
GAAGCGCAAAGCTGTGGCCTCGGCAGATACTAAAGGAGTGGGAAACTTGC
ATAAAAGCAACTGGGCCACGCTGGCTGCTGGAGGCGGCGCCACCGCTGCG
GTAAGCAATGGGCACCCAACCACCGACAAAAGCAAGAAGAAGAGGGCGAA
ACAGCAGCAGGGTAGCAAGCGGCCGCGAGCTGAGATGGGGTCTAGCAACA
GCAACAGCATGGCCACCACCACCACGCCCAACTTCTTCTCCGTCAGCCGG
AATACTACCGTCTCCGGAGCCAGCAGCACCGCCGGGGTCAGCGGCAAGGC
CGGCAAGAAGCGTAAACGGACCGCCGGCGCCGGCGGCATAGGCTCGCCCG
CCGAGAGTACCAACGGCAGTGCTCCCAACCATGTCACCGGAGGCAAGCAG
GGGGGGCGCCCAGGGGCGAACAACAGCACCAAGTGGCCGCGCTCCAACGT
CCTTAACCTCGCCTTCCAGGCACAAAAGGAAGAGGCTGCCGCCGCTGCCG
CTACCGTCGCCGCGGGCGGAGCGAAGCACAACGGCGGAGGCAAGGGGCGA
GGGAAGAGGGGTGGATCTGAGCAGGCGTTGACGGCGGCAGAAAAGGCGCA
GTACGTGTCCCTGGATTGCGAGATGGTTGGCGTCGGGCCTGGGGGCTGCC
GGAGCGCGCTCGCGCGATGTTGCCTCGTGGACTGGGACGGAAACACCATA
TGACGGTAAAGAAAGGCTCCTCGACCGCGAAGGTCGCTTCGTCAGCTGAC
ACCACCCTGTGGGAGCAGCTCTTATCGCGAAGAGGTGGTACACAGCCTAC
TGCTACTACTACTGGTGCCGCTGGTGCCGCAAGCTCGAGGCCTGCTGTCC
CCGAGACAGCAGTGAAGGCGGCACCTCGTTCCGACAAGCTGCCCAAGAAG
AAGCGCAAAGCTGTGGCCTCGGCAGATACTAAAGGAGTGGGAAACTTGCA
TAAAAGCAACTGGGCCACGCTGGCTGCTGGAGGCGGCGCCACCGCTGCGG
TAAGCAATGGGCACCCAACCACCGACAAAAGCAAGAAGAAGAGGGCGAAA
CAGCAGCAGGGTAGCAAGCGGCCGCGAGCTGAGATGGGGTCTAGCAACAG
CAACAGCATGGCCACCACCACCACGCCCAACTTCTTCTCCGTCAGCCGGA
ATACTACCGTCTCCGGAGCCAGCAGCACCGCCGGGGTCAGCGGCAAGGCC
GGCAAGAAGCGTAAACGGACCGCCGGCGCCGGCGGCATAGGCTCGCCCGC
CGAGAGTACCAACGGCAGTGCTCCCAACCATGTCACCGGAGGCAAGCAGG
GGGGGCGCCCAGGGGCGAACAACAGCACCAAGTGGCCGCGCTCCAACGTC
CTTAACCTCGCCTTCCAGGCACAAAAGGAAGAGGCTGCCGCCGCTGCCGC
TACCGTCGCCGCGGGCGGAGCGAAGCACAACGGCGGAGGCAAGGGGCGAG
GGAAGAGGGGTGGATCTGAGCAGGCGTTGACGGCGGCAGAAAAGGCGCAG
TACGTGTCCCTGGATTGCGAGATGGTTGGCGTCGGGCCTGGGGGCTGCCG
GAGCGCGCTCGCGCGATGTTGCCTCGTGGACTGGGACGGAAACACCATCT
ACGACAAGCACGTGACCCCCAACGAGCGCGTTACAGACTTCCGAACCTTC
GTTAGCGGCGTCAAGGCGAACCACCTCAAGGGAGGGCTGCGCCTGCGGCA
GTGCCAGGAGGAAGTGGCGGCGATTTTGAAGGACAAGGTTCTCATCGGCC
ACGCGCTGACCAACGATCTCAAGGCATGGATTGATCTACGACAAGCACGT
GACCCCCAACGAGCGCGTTACAGACTTCCGAACCTTCGTTAGCGGCGTCA
AGGCGAACCACCTCAAGGGAGGGCTGCGCCTGCGGCAGTGCCAGGAGGAA
GTGGCGGCGATTTTGAAGGACAAGGTTCTCATCGGCCACGCGCTGACCAA
CGATCTCAAGGCATGGATTGATGCTTTGATGATGAGCCACCCCCCGCGTT
CTACGCGAGACACGGCGACGTATCGGCCGTACCAGAAGGCGCACGGCAAG
GCCGGCGGCAAGCTGCGCCCAAGGTCCCTCAAGCTGCTCTCCCAGGAACA
CCTCGACCGTCCCATTCAGACAGGCCAGCACAACCCAGCTTTGATGATGA
GCCACCCCCCGCGTTCTACGCGAGACACGGCGACGTATCGGCCGTACCAG
AAGGCGCACGGCAAGGCCGGCGGCAAGCTGCGCCCAAGGTCCCTCAAGCT
GCTCTCCCAGGAACACCTCGACCGTCCCATTCAGACAGGCCAGCACAACC
CAGCGGAGGATGCCAAGGCCGCCATGGACCTGTACAAAATAGCGCGCTTC
GAGTGGGAGAAGTCGCTCTCGGCGGCAGGAAAAATGCGAGGCCGAAAGGG
CTTCGTGGACCAGCAAGGGCCCTAAGCGGAGGATGCCAAGGCCGCCATGG
ACCTGTACAAAATAGCGCGCTTCGAGTGGGAGAAGTCGCTCTCGGCGGCA
GGAAAAATGCGAGGCCGAAAGGGCTTCGTGGACCAGCAAGGGCCCTAA
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