mRNA_E-fasciculatus_F_contig16009.4123.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16009.4123.1
Unique NamemRNA_E-fasciculatus_F_contig16009.4123.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: D8LG87_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG87_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.480e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            +YDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA
Sbjct:  169 KYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 213
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: A0A6H5KSI6_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.730e-21
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            +YDKYTARELFRMMGCS+RLYRDAFEPMLLVGLFAPGEQCSAAGA
Sbjct:  233 KYDKYTARELFRMMGCSDRLYRDAFEPMLLVGLFAPGEQCSAAGA 277
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: R7QAT1_CHOCR (Amine oxidase (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAT1_CHOCR)

HSP 1 Score: 79.3 bits (194), Expect = 3.880e-16
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            ++DK TA+ELFR  GCSER+Y++AFEPMLLVGLFAPGEQCSAAGA
Sbjct:  139 KFDKMTAKELFRYYGCSERVYKEAFEPMLLVGLFAPGEQCSAAGA 183
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: A0A1Y1IKJ4_KLENI (Amine oxidase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKJ4_KLENI)

HSP 1 Score: 79.3 bits (194), Expect = 3.950e-16
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            +YDK TARELF+M GCSER+Y DAF PMLLVGLFAPGEQCSAA A
Sbjct:  284 KYDKLTARELFKMYGCSERVYTDAFNPMLLVGLFAPGEQCSAAAA 328
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: A0A6P0JVF7_9CYAN (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0JVF7_9CYAN)

HSP 1 Score: 78.6 bits (192), Expect = 6.310e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            RYDK TARELFR  G SERLY++AFEPMLLVGLFAPGEQCSAA A
Sbjct:  149 RYDKMTARELFRQYGVSERLYKEAFEPMLLVGLFAPGEQCSAAAA 193
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: L8M1I3_9CYAN (Amino_oxidase domain-containing protein n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8M1I3_9CYAN)

HSP 1 Score: 78.6 bits (192), Expect = 7.250e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            RYDK TARELFR  G SERLY++AFEPMLLVGLFAPGEQCSAA A
Sbjct:  149 RYDKITARELFRQYGVSERLYKEAFEPMLLVGLFAPGEQCSAAAA 193
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: A0A0D6AN55_9CHRO (Pro-zeta-carotene desaturase n=1 Tax=Geminocystis sp. NIES-3709 TaxID=1617448 RepID=A0A0D6AN55_9CHRO)

HSP 1 Score: 78.6 bits (192), Expect = 7.260e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            RYDK TARELFR  G SERLYR++FEPMLLVGLFAPGEQCSAA A
Sbjct:  149 RYDKVTARELFRQYGVSERLYRESFEPMLLVGLFAPGEQCSAAAA 193
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: A0A2V3ITH7_9FLOR (15-cis-phytoene desaturase, chloroplastic/chromoplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH7_9FLOR)

HSP 1 Score: 78.6 bits (192), Expect = 7.340e-16
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            ++DK TA+ELF+  GCSER+Y++AFEPMLLVGLFAPGEQCSAAGA
Sbjct:  195 KFDKMTAKELFKQYGCSERVYKEAFEPMLLVGLFAPGEQCSAAGA 239
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: B8LS23_PICSI (Amino_oxidase domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LS23_PICSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.370e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAA 129
            +YDK TARELFR  GCSER+Y+DAF PMLLVGLFAPGEQCSAA
Sbjct:  222 KYDKLTARELFRQFGCSERVYQDAFNPMLLVGLFAPGEQCSAA 264
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BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Match: UPI000349D2CD (FAD-dependent oxidoreductase n=1 Tax=Geminocystis herdmanii TaxID=669359 RepID=UPI000349D2CD)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA 135
            RYDK TARELF+  G SERLY+D+FEPMLLVGLFAPGEQCSAA A
Sbjct:  149 RYDKVTARELFKQYGVSERLYKDSFEPMLLVGLFAPGEQCSAAAA 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16009.4123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG87_ECTSI3.480e-2197.78Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KSI6_9PHAE9.730e-2195.56Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
R7QAT1_CHOCR3.880e-1680.00Amine oxidase (Fragment) n=1 Tax=Chondrus crispus ... [more]
A0A1Y1IKJ4_KLENI3.950e-1682.22Amine oxidase n=1 Tax=Klebsormidium nitens TaxID=1... [more]
A0A6P0JVF7_9CYAN6.310e-1684.44FAD-dependent oxidoreductase (Fragment) n=1 Tax=Ka... [more]
L8M1I3_9CYAN7.250e-1684.44Amino_oxidase domain-containing protein n=1 Tax=Xe... [more]
A0A0D6AN55_9CHRO7.260e-1684.44Pro-zeta-carotene desaturase n=1 Tax=Geminocystis ... [more]
A0A2V3ITH7_9FLOR7.340e-1677.7815-cis-phytoene desaturase, chloroplastic/chromopl... [more]
B8LS23_PICSI7.370e-1683.72Amino_oxidase domain-containing protein n=1 Tax=Pi... [more]
UPI000349D2CD1.360e-1582.22FAD-dependent oxidoreductase n=1 Tax=Geminocystis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16009contigE-fasciculatus_F_contig16009:2280..2414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog2880.D8LG87
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.6426113-CDS-E-fasciculatus_F_contig16009:2279..24141622928070.6426113-CDS-E-fasciculatus_F_contig16009:2279..2414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16009 2280..2414 +
1695995810.9990273-CDS-E-fasciculatus_F_contig16009:2279..24141695995810.9990273-CDS-E-fasciculatus_F_contig16009:2279..2414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16009 2280..2414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16009.4123.1prot_E-fasciculatus_F_contig16009.4123.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16009 2280..2414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16009.4123.1

>prot_E-fasciculatus_F_contig16009.4123.1 ID=prot_E-fasciculatus_F_contig16009.4123.1|Name=mRNA_E-fasciculatus_F_contig16009.4123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
RYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGA
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mRNA from alignment at E-fasciculatus_F_contig16009:2280..2414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16009.4123.1 ID=mRNA_E-fasciculatus_F_contig16009.4123.1|Name=mRNA_E-fasciculatus_F_contig16009.4123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16009:2280..2414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTATGACAAGTACACGGCTCGAGAACTGTTCCGAATGATGGGGTGCTC
CGAAAGGCTGTACAGGGATGCCTTCGAGCCCATGCTGCTGGTCGGCCTAT
TTGCACCCGGGGAGCAGTGCAGCGCGGCAGGTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16009:2280..2414+

>mRNA_E-fasciculatus_F_contig16009.4123.1 ID=mRNA_E-fasciculatus_F_contig16009.4123.1|Name=mRNA_E-fasciculatus_F_contig16009.4123.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16009:2280..2414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTATGACAAGTACACGGCTCGAGAACTGTTCCGAATGATGGGGTGCTC
CGAAAGGCTGTACAGGGATGCCTTCGAGCCCATGCTGCTGGTCGGCCTAT
TTGCACCCGGGGAGCAGTGCAGCGCGGCAGGTGCGAGGTATGACAAGTAC
ACGGCTCGAGAACTGTTCCGAATGATGGGGTGCTCCGAAAGGCTGTACAG
GGATGCCTTCGAGCCCATGCTGCTGGTCGGCCTATTTGCACCCGGGGAGC
AGTGCAGCGCGGCAGGTGCG
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