mRNA_E-fasciculatus_F_contig16005.4121.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: D8LIM6_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM6_ECTSI) HSP 1 Score: 135 bits (339), Expect = 3.080e-37 Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 1 MGSLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVKRNDRLVVL 213
MGSLEWFKEVGPLIEKTGETPPMECIQNAGDL YVPANWRHMTLNIGESIGVGGQAVY GE + D L +L
Sbjct: 1 MGSLEWFKEVGPLIEKTGETPPMECIQNAGDLFYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDGLELL 71
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A6H5K503_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K503_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.750e-33 Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 1
Query: 1 MGSLEWFKEVGPLIEKTGETPPMECIQ---NAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVKRNDRLVVL 213
MGSLEWFKEVGPLIEKTGETPPMECIQ NAGDL+YVPANWRHMTLNIGESIGVGGQAVY GE + D L +L
Sbjct: 314 MGSLEWFKEVGPLIEKTGETPPMECIQAMCNAGDLIYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDGLELL 387
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A7S2RCI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCI2_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.770e-15 Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 7 SLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVKRNDRLVVL 213
S +WF++V P + ETP ++C+Q G+++Y+PA W+H+TLNIGE IGVGGQA Y + + D LV L
Sbjct: 120 SWDWFRQVLPKVPP--ETPLLQCVQRPGEVLYLPAGWKHLTLNIGEVIGVGGQAPYSTQARLRDALVGL 186
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A7S2RCS8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCS8_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.440e-15 Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 7 SLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVKRNDRLVVL 213
S +WF++V P + ETP ++C+Q G+++Y+PA W+H+TLNIGE IGVGGQA Y + + D LV L
Sbjct: 120 SWDWFRQVLPKVPP--ETPLLQCVQRPGEVLYLPAGWKHLTLNIGEVIGVGGQAPYSTQARLRDALVGL 186
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A7S1KZW4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1KZW4_ALECA) HSP 1 Score: 61.6 bits (148), Expect = 6.550e-10 Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 7 SLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVK 189
S +WF+ V P + + P+EC+Q G++MY+P W H+T+N GE+IG+G QAV+ V+
Sbjct: 7 SRQWFERVYPTLP--ADLLPVECMQEPGEVMYLPGAWAHLTVNSGEAIGLGAQAVWKQSVE 65
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: UPI0003F08594 (uncharacterized protein LOC102807379 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08594) HSP 1 Score: 58.9 bits (141), Expect = 2.730e-8 Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 7 SLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQ 165
SL+WF EV P +E GE P+ECIQ AG+++ P ++ H TLNIG+++ +G Q
Sbjct: 282 SLDWFNEVYPHLE--GEEKPIECIQEAGEILSQPESFYHSTLNIGDTVAIGIQ 332
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A482SJA5_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJA5_9ARCH) HSP 1 Score: 57.4 bits (137), Expect = 4.160e-8 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 64 PMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQAVYGGEVKRNDR 201
P+EC+Q+ GD++Y+P W HMT+NIGE+I +GGQ + NDR
Sbjct: 134 PLECMQHPGDILYLPPMWSHMTMNIGETIAIGGQQY----LSENDR 175
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A7E6EXN7_OCTVU (uncharacterized protein LOC115213383 isoform X1 n=5 Tax=Octopus TaxID=6643 RepID=A0A7E6EXN7_OCTVU) HSP 1 Score: 57.8 bits (138), Expect = 6.960e-8 Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 10 LEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQ 165
LEWF + P ++++ + P+ECIQ AG+++Y+P ++ H TLNIG+++ +G Q
Sbjct: 281 LEWFDTIYPTLDESNK--PIECIQEAGEILYLPESYYHSTLNIGDTVAIGIQ 330
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A8B6G5K5_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6G5K5_MYTGA) HSP 1 Score: 55.5 bits (132), Expect = 3.040e-7 Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 10 LEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQ 165
LEWF V P I K E P+EC+Q AG+++Y+P + H T+NIG+++ +G Q
Sbjct: 2 LEWFDMVYPKI-KAEEDKPIECVQAAGEILYLPEGFYHGTINIGDTVAIGIQ 52
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Match: A0A812BU08_SEPPH (Hypothetical protein n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BU08_SEPPH) HSP 1 Score: 55.8 bits (133), Expect = 3.340e-7 Identity = 21/52 (40.38%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 10 LEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIGVGGQ 165
LEWF + P ++++ P+ECIQ AG++ Y+P ++ H T+NIG+++ +G Q
Sbjct: 332 LEWFNSIYPKLDESNR--PLECIQEAGEIFYLPESFYHGTINIGDTVAIGMQ 381 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16005.4121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16005.4121.1 >prot_E-fasciculatus_F_contig16005.4121.1 ID=prot_E-fasciculatus_F_contig16005.4121.1|Name=mRNA_E-fasciculatus_F_contig16005.4121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp MGSLEWFKEVGPLIEKTGETPPMECIQNAGDLMYVPANWRHMTLNIGESIback to top mRNA from alignment at E-fasciculatus_F_contig16005:263..808- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16005.4121.1 ID=mRNA_E-fasciculatus_F_contig16005.4121.1|Name=mRNA_E-fasciculatus_F_contig16005.4121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16005:263..808- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16005:263..808- >mRNA_E-fasciculatus_F_contig16005.4121.1 ID=mRNA_E-fasciculatus_F_contig16005.4121.1|Name=mRNA_E-fasciculatus_F_contig16005.4121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16005:263..808- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |