mRNA_E-fasciculatus_F_contig160.4111.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig160.4111.1 vs. uniprot
Match: D8LQT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT9_ECTSI) HSP 1 Score: 1996 bits (5171), Expect = 0.000e+0 Identity = 1317/2023 (65.10%), Postives = 1378/2023 (68.12%), Query Frame = 3
Query: 1041 GAYVGLSYRTTDDGAEKRNTGEKNCSPDACRAGNFTSTSAVGSADSIVVTSVDGDSGCSAGGRSGADRLDS-ANDGTAAAAVGGDDANDDELTGELCHKSHCTASCWFACPCACHTATMVEAELSSIATEKGNDKATDRRRATDTSARSKGQGQGRDVVLLPAAEPERNGADNGARVAVIAADTVKRAFLATSESGAGPRKIHFGTAARYPSLGQPTGGDVRAADSGSGSVKDIGGTRWYDASSAEAITRPRVKGFQLSRRARDPTLARAESAATAVIAIAERRARAPFSSVSVEGSGNHSPCTTTRSGGDSTEASQKGGRQTALSEVGGPGERMVTEKVGES-QAAATAAAAGVPAAVFDGEVEMVTEIPGGTPAGNVATAPREPAAAAQTEEEDVAHKKPPVLPARQQPQDKAVTSXXXXXXXXXXXXPLLSSGEPQARATGAXXXXXPQDLPQXXXXXXXXXXXXX----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-AWGEDGVTETSSSSXXX-------------------------------------------------CNSVGSNSS----YSSGDSQWEEE-IDGVWRGFLTVSRRVPGGKFAPLERKGVGDKNRAAVERARLQRERERNVGYYDVRRSLTEERAPSAVNFAAQAEATARERHRINLRRAKVQKRVGTRLLHRAWASECEDIETREGGVSRAGEARGRSVDDPTRRRTPGFRYVEESTLSAPAARQLAEREARDRKRHDWLEVNIHQKWVETSREGGGSDGGGEFGRATGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLARATRTGRLGDAHVPIMAVGVARKEAVGPRGERPEVAAEMDREDEGEEGGVLVLDVPDDVTTRGRRRVPGGVLSYAPRWASEKEAGEPRDGEVLDIKPEAGRDVLGPRRDKGHRYLRFETQAGRGRGDGSITPTAAGGLXXXXXXXXXXXXXVAAEGDVLVLSPRDPTDVRPKAAVNLDKQVPRWSEGEEGXXXXXXXXXXXXXXXGDVLLLNPDHGAVRKKTTAAPAFDKQLGWREWQAADDLDGRERREAWRWGGEXXXXXXXXXXXXXXXXXXXXXPRLVTLVDIAKQQGQQERLEEDGNDYDDDSLFPPPLEMAYRNADYDTDPGIAMTRPRAAGGTADMRRSTGRGGSADGCGGGRGLGSPAAAQEGDELILSPRWSFLATRPSQAAEWRRGSTTPRFLEDLSGGPAAATVEEGEGSPRLDLAGVEAARAKLSRWRGSAAVPPSDVDMSKIQSRPSSLFGIPERHVRHAALPGAAAAAGFTDDELRDDRLMEGQRLQLHVGSGSTVAPPPRPRLVQGVRFDGARSSRPPTL-SPLLSAIPPPGTGANTSTISXXXXXXXXXXXXXXXXXXXXXXXAPPPVVQATATRRQLFSHRRGGGHGKVASGDTQQPGAFVIGPGGARIPW-SDDGGGDDDGGRSVG-VRATNSGKS---SRASKAALLAETNFRRNLAA-ERIPRGGGXXXXXXXXXXGRGIELEGRVGGGRGRVPKPGTST 6905
GA VGLS R TD GA KR T E +CS + CRAGNFTST+AVG ADSI T VDGD+GCSA GRS ADR DS A+DGTAA AV GDD +DD+ TGE+ KS C ASCWFACPCACHT+T+V+ ELSSIATEKGNDK TDRRR T ARSKGQGQG++VVLLPAAEP NGADNGARVA +AAD VKRAFLATSESGAGPRKIHFGTAARYP LGQPTGG RAAD+GSGSVKDI G R YD SS EAITRPRVKGFQ SRRARDPT+ARAES ATAVIAIAERR+RAP S+V V GSG TR GGDSTEASQKG RQTAL EVGGPGE V E+ GE QAA A AAGVPAAV DGE E VT GGTPAG TAPREPAAAAQTEE+D AH+KPPVLPA QQP+D+AV S PLLSSGEP A TGA QDLPQXXXXXXXXXXXXX GS SIV GD+FLSHRSKVRAVVFPRPHTHQARKRPAGPRG+EREGG+PGPGEYHV GGA DGWGGA KGPLVAPKR K KARVVVETRKVKEACRGGPGEY+IQ RR GS KGRLRS SRRP FR GR S GSGKKRN GS TQREDRSR G R PRRLAWAEDNVPR RDRG G YHSESR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PR+ G + GRRR D E+ S XXX C YSSGD QWEEE IDGVWRGFLTVSRRVPGG+FAPLERKGVGDKNRAAVERARLQRERERNVGYYDVRRSLTEER PSAVNFAAQAEA ARERHR +LR+AKVQKR+G LLHRAW SECED+ETRE GVSR GEARGRSVDDPTRRRTPGFRYVEE+ L PAARQ AEREAR+RKRHDW+EVNIHQKWVET R GGGSDGGG+FGR TGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLAR TRTGRLGDA VP+MAVGVARKEAVGPRGERPEVAAEMDREDEGEEGGVLVLDVPDDVTTRGRR VPGGVLSYAPRW SEKE G DGEVLDIKPEAGRDV+GPRRDKGHRYLRFETQAGRG GDGSITPTAAGGL VAAEGDVLVLSPRDP DVRPK AVNLDKQVPRWSEG+ GDVLLLNPDHGAVR+K TAAPAFDKQLGWREWQAADDLD RERRE W GGE PRLVTLVDI KQQGQQERL+EDGND+ DSL PPPLE+ YR+ADYDT+PG+A+TRPRA GGTADMR+ TG+G AAQEGDELILSPRWSFLATRPSQAAEWRRGSTTPRFLE L+GG A ATVEEGEGSPRLDL GVEAARAKLSRWRGSAAVPP DVDMSKIQSRPSSLFGIPERHVRHAA P AAA FTDDELRDDRLMEGQRLQLHVGSGST P RPRLVQGVRF ARSSR PTL SPLL A+P PG ANTS ++ APPPV QA ATR+ S+RRGG V +GDT PGA V+GPGG PW SDD GGD GGRSVG VRA NSGKS SRASKAALLA TNFRRNLA ER+ RGG XXXXXXXXX RGIE EGR GGRGRV KPGT T
Sbjct: 329 GACVGLSNRATDGGAGKRKTEENHCSFNDCRAGNFTSTTAVGKADSIASTGVDGDNGCSAEGRSSADRHDSGASDGTAAVAVVGDDPDDDDFTGEVRRKSCCAASCWFACPCACHTSTVVDTELSSIATEKGNDKITDRRRVTGIPARSKGQGQGQEVVLLPAAEPGMNGADNGARVAALAADDVKRAFLATSESGAGPRKIHFGTAARYPLLGQPTGGSTRAADAGSGSVKDISGPRSYDTSSTEAITRPRVKGFQFSRRARDPTVARAESTATAVIAIAERRSRAPCSTVFVGGSGGXXXXXXTRDGGDSTEASQKG-RQTALWEVGGPGEGAVPEEGGEEIQAAGAAGAAGVPAAVSDGEAETVTGSLGGTPAGKATTAPREPAAAAQTEEDDSAHEKPPVLPAWQQPEDEAVASASKQPERATTASPLLSSGEPAACVTGAAATMTQQDLPQXXXXXXXXXXXXXXXXXGSDSIVAGDEFLSHRSKVRAVVFPRPHTHQARKRPAGPRGLEREGGSPGPGEYHVRGGAGDGWGGAGRKGPLVAPKRIALKEKARVVVETRKVKEACRGGPGEYEIQSP--------------------------------------------------------------------------------RRQSGS-----------------------------------------------------------------------KGRLRSGSRRPSREREGGRSSRPLRGFRWGGRSSCGSGKKRNTSGSNRTQREDRSRSGVREPRRLAWAEDNVPRPPRDRGNGIYHSESRRHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLPGQERSRQSAFETSESGSSVSFLSSSPSSS-------------------------------------PRRHGGRARFDGEGRRRHYQHRRDRGLESDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRDYXXXXXXXXXYSSGDGQWEEEEIDGVWRGFLTVSRRVPGGRFAPLERKGVGDKNRAAVERARLQRERERNVGYYDVRRSLTEERVPSAVNFAAQAEAMARERHRTSLRQAKVQKRMGAGLLHRAWVSECEDMETREDGVSRGGEARGRSVDDPTRRRTPGFRYVEETPLPVPAARQRAEREARERKRHDWMEVNIHQKWVETPRGGGGSDGGGDFGRTTGREKVEVKRKGEAKVKPFDRALRPVDAMGPGRYETEDLARTTRTGRLGDAPVPVMAVGVARKEAVGPRGERPEVAAEMDREDEGEEGGVLVLDVPDDVTTRGRRHVPGGVLSYAPRWTSEKE-GAKWDGEVLDIKPEAGRDVVGPRRDKGHRYLRFETQAGRGGGDGSITPTAAGGLSPGVANGFGFGVAVAAEGDVLVLSPRDPADVRPKVAVNLDKQVPRWSEGQGEGGGRRTTRENTRNDDGDVLLLNPDHGAVRRKPTAAPAFDKQLGWREWQAADDLDERERREVWGSGGEEDEGGGCYGDGPVERADRRRRPRLVTLVDIEKQQGQQERLQEDGNDFG-DSLIPPPLELTYRDADYDTEPGMALTRPRAVGGTADMRQGTGKGXXXXXXX--XXXXXXPAAQEGDELILSPRWSFLATRPSQAAEWRRGSTTPRFLETLAGGLAEATVEEGEGSPRLDLVGVEAARAKLSRWRGSAAVPPLDVDMSKIQSRPSSLFGIPERHVRHAA-PSGGAAAAFTDDELRDDRLMEGQRLQLHVGSGSTATP--RPRLVQGVRFGAARSSRTPTLLSPLLLAMPLPGRRANTSAVTPTAAASSAAGGDAVGLATEANEPAPPPVAQAAATRQ--LSNRRGGPE-NVTAGDTLIPGARVVGPGGT-FPWRSDDDGGD--GGRSVGGVRAVNSGKSRSSSRASKAALLAGTNFRRNLAGGERVSRGGXXXXXXXXXX--RGIEKEGRAEGGRGRVSKPGTHT 2147 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig160.4111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig160.4111.1 >prot_E-fasciculatus_F_contig160.4111.1 ID=prot_E-fasciculatus_F_contig160.4111.1|Name=mRNA_E-fasciculatus_F_contig160.4111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=2012bp MWAEEGRGEVGDTETAAAELSVQESPVSEACPVPMDEEGAEEEEEEEEEEback to top mRNA from alignment at E-fasciculatus_F_contig160:2880..20843- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig160.4111.1 ID=mRNA_E-fasciculatus_F_contig160.4111.1|Name=mRNA_E-fasciculatus_F_contig160.4111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=17964bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:2880..20843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig160:2880..20843- >mRNA_E-fasciculatus_F_contig160.4111.1 ID=mRNA_E-fasciculatus_F_contig160.4111.1|Name=mRNA_E-fasciculatus_F_contig160.4111.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=12072bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:2880..20843- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |